CN184644

Overview
NameCN184644
Unique NameCN184644
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length403
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7601 contig Csv1_Contig7601:949..1351. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN184644 vs. ExPASy Swiss-Prot
Match: XTH6_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 6 OS=Arabidopsis thaliana GN=XTH6 PE=2 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 1.131e-14
Identity = 31/40 (77.50%), Postives = 37/40 (92.50%), Query Frame = -2 
Query:  274 FQALTAMEARRYRWVRFNHMIYDYCTDKSRYPVPPPECLA 393
            +Q+L A+EARRYRWVR NHM+YDYCTD+SR+PVPPPEC A
Sbjct:  253 YQSLNAVEARRYRWVRVNHMVYDYCTDRSRFPVPPPECRA 292
[Close]
BLAST of CN184644 vs. ExPASy Swiss-Prot
Match: XTH7_ARATH (Probable xyloglucan endotransglucosylase/hydrolase protein 7 OS=Arabidopsis thaliana GN=XTH7 PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 3.291e-14
Identity = 31/42 (73.81%), Postives = 36/42 (85.71%), Query Frame = -2 
Query:  268 FQALTAMEARRYRWVRFNHMIYDYCTDKSRYPVPPPECLAGI 393
            +  L+ +EAR YRWVR NHM+YDYCTDKSR+PVPPPEC AGI
Sbjct:  252 YHQLSPVEARSYRWVRVNHMVYDYCTDKSRFPVPPPECSAGI 293
The following BLAST results are available for this feature:
BLAST of CN184644 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
XTH6_ARATH1.131e-1477.50Probable xyloglucan endotransglucosylase/hydrolase... [more]
XTH7_ARATH3.291e-1473.81Probable xyloglucan endotransglucosylase/hydrolase... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0005N08_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005N08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184644 ID=CN184644; Name=CN184644; organism=Citrus sinensis; type=EST; length=403bp
CTTTTATTGGCACAGAATACTGTGCATCAAATTCAGACTTATATATGGTA
CAAGCGGAGCAGAATACCCACATATTTCCCACTCCCATAATCACATTTAA
AAGCACACAATGTTTATTTTCCCTCCTGCCCCTCCCTTGATATGCGTATA
AGTCTTTTCACACGAATAGGGAATAATACAAAGGACGTGTACGTGAAGTA
ATATACATGATATGATACGGATATGGAGTACCGTCCAACTGCTTAATTAA
TTGGCGGGTTGAATTTATATGCCGGCAAGGCATTCCGGTGGGGGTACTGG
GTATCTTGATTTATCAGTGCAATAATCATAGATCATGTGGTTGAAACGAA
CCCATCTGTATCTTCTTGCTTCCATGGCGGTGAGGGCTTGAAAATTATTT
TGC
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