CN184641

Overview
NameCN184641
Unique NameCN184641
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length381
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6080 contig Csv1_Contig6080:259..639. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184641 vs. ExPASy Swiss-Prot
Match: RL313_ARATH (60S ribosomal protein L31-3 OS=Arabidopsis thaliana GN=RPL31C PE=2 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 4.007e-20
Identity = 50/75 (66.67%), Postives = 55/75 (73.33%), Query Frame = -3
Query:  155 KKAMGTTDVRVDVKLNKQVWSXXXXXXXXXXXXXXXXXRNDEEDAKEEFYSLVTVAEIPPEGLKGLGTKVIDEED 379
            +KAMGT DVRVDVKLNKQ+WS                 RND+EDAKEEF+SLVTVAEIP EGL GLGTKVI+EED
Sbjct:   45 EKAMGTKDVRVDVKLNKQIWSKGIRGPPRRIRVRVARKRNDDEDAKEEFFSLVTVAEIPAEGLSGLGTKVIEEED 119          
BLAST of CN184641 vs. ExPASy Swiss-Prot
Match: RL31_PICMA (60S ribosomal protein L31 OS=Picea mariana GN=RPL31 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.234e-20
Identity = 48/75 (64.00%), Postives = 55/75 (73.33%), Query Frame = -3
Query:  155 KKAMGTTDVRVDVKLNKQVWSXXXXXXXXXXXXXXXXXRNDEEDAKEEFYSLVTVAEIPPEGLKGLGTKVIDEED 379
            +KAMGTTDVR+DVKLNK VWS                 RNDEEDAK+E YS+VTVAE+PPEGL GLGTK+I+EED
Sbjct:   46 QKAMGTTDVRLDVKLNKAVWSRGIRSVPRRMRVRISRKRNDEEDAKDELYSIVTVAEVPPEGLTGLGTKIIEEED 120          
BLAST of CN184641 vs. ExPASy Swiss-Prot
Match: RL31_NICGU (60S ribosomal protein L31 OS=Nicotiana glutinosa GN=RPL31 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.523e-19
Identity = 48/75 (64.00%), Postives = 55/75 (73.33%), Query Frame = -3
Query:  155 KKAMGTTDVRVDVKLNKQVWSXXXXXXXXXXXXXXXXXRNDEEDAKEEFYSLVTVAEIPPEGLKGLGTKVIDEED 379
            +KAMGT DVRVDVKLNKQ+WS                 RND+EDAKEE YSLVTVAEIP +GLKGLGTK+I++ED
Sbjct:   46 QKAMGTKDVRVDVKLNKQIWSRGIRSVPRRVRVRIARKRNDDEDAKEELYSLVTVAEIPAKGLKGLGTKIIEDED 120          
BLAST of CN184641 vs. ExPASy Swiss-Prot
Match: RL311_ARATH (60S ribosomal protein L31-1 OS=Arabidopsis thaliana GN=RPL31A PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.523e-19
Identity = 49/74 (66.22%), Postives = 54/74 (72.97%), Query Frame = -3
Query:  155 KAMGTTDVRVDVKLNKQVWSXXXXXXXXXXXXXXXXXRNDEEDAKEEFYSLVTVAEIPPEGLKGLGTKVIDEED 376
            KAMGT DVRVDVKLNKQ+WS                 RND+EDAKEEF+SLVTVAEIP EGL GLGTKVI+EE+
Sbjct:   46 KAMGTKDVRVDVKLNKQIWSKGIRGPPRRIRVRVARKRNDDEDAKEEFFSLVTVAEIPAEGLSGLGTKVIEEEE 119          
BLAST of CN184641 vs. ExPASy Swiss-Prot
Match: RL312_ARATH (60S ribosomal protein L31-2 OS=Arabidopsis thaliana GN=RPL31B PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.989e-19
Identity = 48/75 (64.00%), Postives = 54/75 (72.00%), Query Frame = -3
Query:  155 KKAMGTTDVRVDVKLNKQVWSXXXXXXXXXXXXXXXXXRNDEEDAKEEFYSLVTVAEIPPEGLKGLGTKVIDEED 379
            +K MGT DVRVDVKLNKQ+WS                 RND+EDAKEEF+SLVTVAEIP EGL GLGTK+I+EED
Sbjct:   45 EKEMGTKDVRVDVKLNKQIWSKGIRGPPRRIRVRVARKRNDDEDAKEEFFSLVTVAEIPAEGLSGLGTKIIEEED 119          
BLAST of CN184641 vs. ExPASy Swiss-Prot
Match: RL31_PERFR (60S ribosomal protein L31 OS=Perilla frutescens GN=RPL31 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.597e-19
Identity = 49/75 (65.33%), Postives = 54/75 (72.00%), Query Frame = -3
Query:  155 KKAMGTTDVRVDVKLNKQVWSXXXXXXXXXXXXXXXXXRNDEEDAKEEFYSLVTVAEIPPEGLKGLGTKVIDEED 379
            +KAMGTTDVRVDVKLNK +WS                 RND+EDAKEE YSLVTVAEIP  GLKGLGT+VIDEE+
Sbjct:   47 QKAMGTTDVRVDVKLNKHIWSRGIRSVPRRIRVRIARKRNDDEDAKEELYSLVTVAEIPEGGLKGLGTQVIDEEE 121          
BLAST of CN184641 vs. ExPASy Swiss-Prot
Match: RL31_PANGI (60S ribosomal protein L31 OS=Panax ginseng GN=RPL31 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.207e-16
Identity = 44/75 (58.67%), Postives = 52/75 (69.33%), Query Frame = -3
Query:  155 KKAMGTTDVRVDVKLNKQVWSXXXXXXXXXXXXXXXXXRNDEEDAKEEFYSLVTVAEIPPEGLKGLGTKVIDEED 379
            +KAMGT DVRVDVKLNKQ+WS                 RND+EDAKEE YSLVTVA+IP   LKGLG ++I+E+D
Sbjct:   46 QKAMGTKDVRVDVKLNKQIWSRGIRSVPRRVRVRIARKRNDDEDAKEELYSLVTVAKIPAGTLKGLGPQIIEEDD 120          
BLAST of CN184641 vs. ExPASy Swiss-Prot
Match: RL31_CHLRE (60S ribosomal protein L31 OS=Chlamydomonas reinhardtii GN=RPL31 PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.575e-11
Identity = 37/72 (51.39%), Postives = 43/72 (59.72%), Query Frame = -3
Query:  161 KAMGTTDVRVDVKLNKQVWSXXXXXXXXXXXXXXXXXRNDEEDAKEEFYSLVTVAEIPPEGLKGLGTKVIDE 376
            K MGT+DVR+DVKLNK VWS                 RND+EDAKEE YS VTVAE   +  KG GT V+ +
Sbjct:   46 KVMGTSDVRLDVKLNKAVWSKGIKNVPTRLRIVISRRRNDDEDAKEEMYSFVTVAE--DQSTKGKGTVVVQD 115          
The following BLAST results are available for this feature:
BLAST of CN184641 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
RL313_ARATH4.007e-2066.6760S ribosomal protein L31-3 OS=Arabidopsis thalian... [more]
RL31_PICMA5.234e-2064.0060S ribosomal protein L31 OS=Picea mariana GN=RPL3... [more]
RL31_NICGU1.523e-1964.0060S ribosomal protein L31 OS=Nicotiana glutinosa G... [more]
RL311_ARATH1.523e-1966.2260S ribosomal protein L31-1 OS=Arabidopsis thalian... [more]
RL312_ARATH1.989e-1964.0060S ribosomal protein L31-2 OS=Arabidopsis thalian... [more]
RL31_PERFR2.597e-1965.3360S ribosomal protein L31 OS=Perilla frutescens GN... [more]
RL31_PANGI1.207e-1658.6760S ribosomal protein L31 OS=Panax ginseng GN=RPL3... [more]
RL31_CHLRE7.575e-1151.3960S ribosomal protein L31 OS=Chlamydomonas reinhar... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0005N06_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005N06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184641 ID=CN184641; Name=CN184641; organism=Citrus sinensis; type=EST; length=381bp
AACAGGGTAAATGCATAAATCACAATACGTTCACGAAACCTTTTTTGGCC
CAAGGCAGTTCTAAAAAGTAAATCCAAAACCAAAAAAGCAACTGAATAAG
ATAAAATTATAGCCAAAATTTGGAGTTCCTTAGCTAAACAGAAAGGTTGC
TTCAATCTTCCTCATCAATGACCTTGGTGCCCAACCCCTTGAGTCCTTCT
GGAGGGATCTCGGCAACAGTGACGAGAGAGTAGAACTCTTCTTTGGCATC
TTCCTCATCGTTTCTCTTCCGTGCAACACGAACACGAATTCTCCTTGGTA
CACTACGGATACCACGGCTCCACACTTGCTTGTTGAGCTTCACATCCACC
CTAACATCAGTTGTCCCCATGGCTTTTTTGA
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