CN184639

Overview
NameCN184639
Unique NameCN184639
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length403
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2435 contig Csv1_Contig2435:1..403. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CN184639 vs. ExPASy Swiss-Prot
Match: MAN1_ORYSJ (Mannan endo-1,4-beta-mannosidase 1 OS=Oryza sativa subsp. japonica GN=MAN1 PE=2 SV=2)

HSP 1 Score: 58.5362 bits (140), Expect = 7.263e-12
Identity = 25/34 (73.53%), Postives = 28/34 (82.35%), Query Frame = -2 
Query:  277 IYLSARRAGAAVGGMFWQLFTEGLDSYRDGYEVI 378
            IY SARR GA VGG+FWQL   G+DSYRDGYEV+
Sbjct:  355 IYESARRGGATVGGLFWQLLVPGMDSYRDGYEVV 388

HSP 2 Score: 30.8018 bits (68), Expect = 7.263e-12
Identity = 14/32 (43.75%), Postives = 18/32 (56.25%), Query Frame = -3 
Query:  180 FSENPSTATIITDQSQKLNRLRKMYVRLRNVQ 275
            F E PST  +IT  S++L  L K + R R  Q
Sbjct:  389 FGETPSTTGVITTNSRRLRFLSKAFARARQAQ 420
The following BLAST results are available for this feature:
BLAST of CN184639 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
MAN1_ORYSJ7.263e-1273.53Mannan endo-1,4-beta-mannosidase 1 OS=Oryza sativa... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0005N05_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005N05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184639 ID=CN184639; Name=CN184639; organism=Citrus sinensis; type=EST; length=403bp
CACAATCCAAATCCATCTCTAAGAGAGAATTCACTTCCTCAGGACACTGA
AATTTCAGTAGCATTCAAGTTGGAAACATCAAATTATCAAGCCTATTTGT
TTTGTCAGTTGCCGGTGCCATTGCTGCCGTTCCCAGCCCACCATTGAGCT
CTTCTGATATCCCTGGCTCTCTTCCATTTCTGAACGTTTCTCAGTCTGAC
ATACATCTTTCGAAGTCGATTGAGCTTCTGAGATTGGTCAGTGATGATGG
TTGCAGTCGAGGGGTTCTCACTGAAGAATCACCTCATACCCATCACGGTA
AGAGTCTAATCCTTCGGTAAAAAGTTGCCAGAACATGCCACCAACAGCTG
CACCGGCCCTCCTGGCTGACAAATAAATTGCCGAAGTAGACCGTATCAAA
CAG
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