CN184637 | Citrus Genome Database

Overview


Name	CN184637
Unique Name	CN184637
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	408

Libraries


Library Name	Type
Ruby Orange Developing Flower cDNA Library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig1188	contig	Csv1_Contig1188:754..1158.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CN184637 vs. ExPASy Swiss-Prot
Match: CHI1_TOBAC (Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 8.326e-19
Identity = 34/64 (53.12%), Postives = 46/64 (71.88%), Query Frame = -1

Query:  154 LPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 345
            LPG+G+ TNIINGG+ECG   +  V++RIGF+  +C   G+ PGDNLDC NQR +G  L+  +M
Sbjct:  266 LPGFGVITNIINGGLECGRGTDSRVQDRIGFYRRYCSILGVSPGDNLDCGNQRSFGNGLLVDTM 329

HSP 2 Score: 30.8018 bits (68), Expect = 8.326e-19
Identity = 13/24 (54.17%), Postives = 15/24 (62.50%), Query Frame = -2

Query:  342 CHEVIFDEWKPSAND--VKRRPGF 407
            CH+VI   W+PSA D    R PGF
Sbjct:  246 CHDVIIGRWQPSAGDRAANRLPGF 269

[Close]

BLAST of CN184637 vs. ExPASy Swiss-Prot
Match: CHI1_SOLTU (Endochitinase 1 (Fragment) OS=Solanum tuberosum GN=CHTB1 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.083e-18
Identity = 34/64 (53.12%), Postives = 48/64 (75.00%), Query Frame = -1

Query:  154 LPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 345
            +PG+G+ TNIINGG+ECG+  +  V++RIGF+  +CG  G+ PGDNLDC NQR +G  L+  +M
Sbjct:  255 VPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGDNLDCGNQRSFGNGLLVDTM 318

HSP 2 Score: 26.9498 bits (58), Expect = 1.083e-18
Identity = 12/24 (50.00%), Postives = 14/24 (58.33%), Query Frame = -2

Query:  342 CHEVIFDEWKPSAND--VKRRPGF 407
            CH+VI   W+PS  D    R PGF
Sbjct:  235 CHDVITGRWQPSGVDQAANRVPGF 258

[Close]

BLAST of CN184637 vs. ExPASy Swiss-Prot
Match: CHI2_SOLTU (Endochitinase 2 (Fragment) OS=Solanum tuberosum GN=CHTB2 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.409e-18
Identity = 33/64 (51.56%), Postives = 48/64 (75.00%), Query Frame = -1

Query:  154 LPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 345
            +PG+G+ TNIINGG+ECG+  +  V++RIGF+  +CG  G+ PGDNLDC NQR +G  L+  ++
Sbjct:  253 VPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGDNLDCGNQRSFGNGLLVDTV 316

HSP 2 Score: 28.1054 bits (61), Expect = 1.409e-18
Identity = 12/24 (50.00%), Postives = 14/24 (58.33%), Query Frame = -2

Query:  342 CHEVIFDEWKPSAND--VKRRPGF 407
            CH+VI   W+PS  D    R PGF
Sbjct:  233 CHDVITGRWQPSGTDQAANRVPGF 256

[Close]

BLAST of CN184637 vs. ExPASy Swiss-Prot
Match: CHI3_SOLTU (Endochitinase 3 (Fragment) OS=Solanum tuberosum GN=CHTB3 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.382e-18
Identity = 33/64 (51.56%), Postives = 48/64 (75.00%), Query Frame = -1

Query:  154 LPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 345
            +PG+G+ TNIINGG+ECG+  +  V++RIGF+  +CG  G+ PGDNLDC NQR +G  L+  ++
Sbjct:  255 VPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGDNLDCGNQRSFGNGLLVDTV 318

HSP 2 Score: 27.335 bits (59), Expect = 2.382e-18
Identity = 12/24 (50.00%), Postives = 14/24 (58.33%), Query Frame = -2

Query:  342 CHEVIFDEWKPSAND--VKRRPGF 407
            CH+VI   W+PS  D    R PGF
Sbjct:  235 CHDVITGRWQPSGADQAANRVPGF 258

[Close]

BLAST of CN184637 vs. ExPASy Swiss-Prot
Match: CHI2_TOBAC (Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.096e-18
Identity = 34/64 (53.12%), Postives = 46/64 (71.88%), Query Frame = -1

Query:  154 LPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 345
            LPG+G+ TNIINGG+ECG   +  V++RIGF+  +C   G+ PGDNLDC NQR +G  L+  +M
Sbjct:  261 LPGFGVITNIINGGLECGRGTDSRVQDRIGFYRRYCSILGVSPGDNLDCGNQRSFGNGLLVDTM 324

HSP 2 Score: 28.8758 bits (63), Expect = 3.096e-18
Identity = 12/24 (50.00%), Postives = 15/24 (62.50%), Query Frame = -2

Query:  342 CHEVIFDEWKPSAND--VKRRPGF 407
            CH+VI   W+PS+ D    R PGF
Sbjct:  241 CHDVIIGRWQPSSADRAANRLPGF 264

[Close]

BLAST of CN184637 vs. ExPASy Swiss-Prot
Match: CHIC_SOLLC (Basic 30 kDa endochitinase OS=Solanum lycopersicum GN=CHI9 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.235e-18
Identity = 33/64 (51.56%), Postives = 47/64 (73.44%), Query Frame = -1

Query:  154 LPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 345
            +PG+G+ TNIINGG+ECG+  +  V++RIGF+  +CG  G+ PG+NLDC NQR +G  L+   M
Sbjct:  259 VPGFGVITNIINGGLECGHGSDSRVQDRIGFYRRYCGILGVSPGENLDCGNQRSFGNGLLVDIM 322

HSP 2 Score: 27.335 bits (59), Expect = 5.235e-18
Identity = 12/24 (50.00%), Postives = 14/24 (58.33%), Query Frame = -2

Query:  342 CHEVIFDEWKPSAND--VKRRPGF 407
            CH+VI   W+PS  D    R PGF
Sbjct:  239 CHDVITGRWQPSGADQAANRVPGF 262

[Close]

BLAST of CN184637 vs. ExPASy Swiss-Prot
Match: CHI3_TOBAC (Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.150e-17
Identity = 32/64 (50.00%), Postives = 47/64 (73.44%), Query Frame = -1

Query:  154 LPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 345
            LPGYG+ TNIINGG+ECG+  +  V++RIGF+  +C   G+ PGDN+DC NQ+ +   L+ ++M
Sbjct:  271 LPGYGVITNIINGGLECGHGSDARVQDRIGFYRRYCSILGVSPGDNIDCGNQKSFNSGLLLETM 334

HSP 2 Score: 27.335 bits (59), Expect = 1.150e-17
Identity = 12/24 (50.00%), Postives = 14/24 (58.33%), Query Frame = -2

Query:  342 CHEVIFDEWKPSAND--VKRRPGF 407
            CH+VI   W PSA D    R PG+
Sbjct:  251 CHDVITGRWTPSAADRAANRLPGY 274

[Close]

BLAST of CN184637 vs. ExPASy Swiss-Prot
Match: CHIT_SOLTU (Endochitinase OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.554e-17
Identity = 33/64 (51.56%), Postives = 47/64 (73.44%), Query Frame = -1

Query:  154 LPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYGLNLMAQSM 345
            LPG+G+ TNIINGG+ECG   ++ V++RIGF+  +C   G+ PGDNLDC NQR +G  L+  ++
Sbjct:  265 LPGFGVITNIINGGLECGRGTDNRVQDRIGFYRRYCSILGVTPGDNLDCVNQRWFGNALLVDTL 328

HSP 2 Score: 28.4906 bits (62), Expect = 5.554e-17
Identity = 12/24 (50.00%), Postives = 14/24 (58.33%), Query Frame = -2

Query:  342 CHEVIFDEWKPSAND--VKRRPGF 407
            CH+VI   W PS+ D    R PGF
Sbjct:  245 CHDVIIGRWNPSSADRAANRLPGF 268

[Close]

BLAST of CN184637 vs. ExPASy Swiss-Prot
Match: CHI3_ORYSJ (Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht3 PE=2 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 5.558e-17
Identity = 33/55 (60.00%), Postives = 41/55 (74.55%), Query Frame = -1

Query:  181 LPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPY 345
            +PGYG  TNIINGG+ECG+  +D V +RIGF+  +C   G+  GDNLDC NQRPY
Sbjct:  263 VPGYGEITNIINGGVECGHGADDKVADRIGFYKRYCDMLGVSYGDNLDCYNQRPY 317

HSP 2 Score: 26.9498 bits (58), Expect = 5.558e-17
Identity = 12/24 (50.00%), Postives = 15/24 (62.50%), Query Frame = -2

Query:  342 CHEVIFDEWKPSAND--VKRRPGF 407
            CH VI  +W PSA+D    R PG+
Sbjct:  243 CHAVITGQWTPSADDQAAGRVPGY 266

[Close]

BLAST of CN184637 vs. ExPASy Swiss-Prot
Match: CHIQ_TOBAC (Acidic endochitinase Q OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 5.585e-17
Identity = 34/56 (60.71%), Postives = 43/56 (76.79%), Query Frame = -1

Query:  178 LPGYGLTTNIINGGIECGYVGNDAVRNRIGFFTTFCGKFGIQPGDNLDCSNQRPYG 345
            +PGYG+ TNIINGGIECG   NDAV +RIG++  +CG   + PG+NLDC NQR +G
Sbjct:  196 VPGYGVITNIINGGIECGIGRNDAVEDRIGYYRRYCGMLNVAPGENLDCYNQRNFG 251

HSP 2 Score: 24.2534 bits (51), Expect = 5.585e-17
Identity = 11/23 (47.83%), Postives = 13/23 (56.52%), Query Frame = -2

Query:  342 HEVIFDEWKPSAND--VKRRPGF 404
            H+VI   W PSA D    R PG+
Sbjct:  177 HDVIIGRWTPSAADQAANRVPGY 199

The following BLAST results are available for this feature:

BLAST of CN184637 vs. ExPASy Swiss-Prot

BLAST of CN184637 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41


Match Name	E-value	Identity	Description
CHI1_TOBAC	8.326e-19	53.13	Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1...	[more]
CHI1_SOLTU	1.083e-18	53.13	Endochitinase 1 (Fragment) OS=Solanum tuberosum GN...	[more]
CHI2_SOLTU	1.409e-18	51.56	Endochitinase 2 (Fragment) OS=Solanum tuberosum GN...	[more]
CHI3_SOLTU	2.382e-18	51.56	Endochitinase 3 (Fragment) OS=Solanum tuberosum GN...	[more]
CHI2_TOBAC	3.096e-18	53.13	Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1...	[more]
CHIC_SOLLC	5.235e-18	51.56	Basic 30 kDa endochitinase OS=Solanum lycopersicum...	[more]
CHI3_TOBAC	1.150e-17	50.00	Endochitinase 3 OS=Nicotiana tabacum GN=CHN14 PE=3...	[more]
CHIT_SOLTU	5.554e-17	51.56	Endochitinase OS=Solanum tuberosum PE=2 SV=1	[more]
CHI3_ORYSJ	5.558e-17	60.00	Chitinase 3 OS=Oryza sativa subsp. japonica GN=Cht...	[more]
CHIQ_TOBAC	5.585e-17	60.71	Acidic endochitinase Q OS=Nicotiana tabacum PE=1 S...	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS04_0005N03_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005N03, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CN184637 ID=CN184637; Name=CN184637; organism=Citrus sinensis; type=EST; length=408bp
GAGGCATTGATCCATGTTGGATCAGTCTTATTTAATTTACTTACAATAAG
AGCGTAACAGTTTAGTTGTCCACCTACAAGTGTGACATCTAAAGTTTTTA
TTAAGTAGCTTTTATTAAGCTTATTTTACTAAAACGTTGATCATGATGAT
TCACATAGATTGTGCCATCAGATTAAGGCCATAAGGCCGTTGGTTGGAGC
AATCAAGATTGTCACCAGGCTGAATCCCAAACTTGCCACAGAAAGTGGTA
AAGAACCCAATACGGTTACGTACAGCGTCATTCCCAACGTAGCCACATTC
AATTCCACCGTTGATTATATTTGTGGTTAGACCGTATCCCGGAAGCCCGG
CCGGCGTTTTACGTCATTTGCTGATGGTTTCCATTCGTCGAAAATGACTT
CGTGGCAC