CN184636

Overview
NameCN184636
Unique NameCN184636
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length476
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN184636_ssr101 microsatellite CN184636_ssr101:101..115. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1868 contig Csv1_Contig1868:36..509. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184636 vs. ExPASy Swiss-Prot
Match: ARG2_PHAAU (Indole-3-acetic acid-induced protein ARG2 OS=Phaseolus aureus GN=ARG2 PE=2 SV=1)

HSP 1 Score: 58.5362 bits (140), Expect = 1.147e-13
Identity = 29/46 (63.04%), Postives = 32/46 (69.57%), Query Frame = 2
Query:  278 MLKKPAEEMTGSSEKVSWVPDPVTGVYRPENLANELDGADLRAMFL 415
            M+ K  EE     EKVSWVPDPVTG YRPEN  NE+D AD+RA  L
Sbjct:   49 MVPKSGEEKVRGGEKVSWVPDPVTGYYRPEN-TNEIDVADMRATVL 93          

HSP 2 Score: 36.965 bits (84), Expect = 1.147e-13
Identity = 17/27 (62.96%), Postives = 20/27 (74.07%), Query Frame = 1
Query:  133 MARSFSNAKLFSALVADGISNAIYKRG 213
            MARSF+N K+ SALVADG SN   + G
Sbjct:    1 MARSFTNVKVLSALVADGFSNTTTRHG 27          
The following BLAST results are available for this feature:
BLAST of CN184636 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ARG2_PHAAU1.147e-1363.04Indole-3-acetic acid-induced protein ARG2 OS=Phase... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0005N03_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005N03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184636 ID=CN184636; Name=CN184636; organism=Citrus sinensis; type=EST; length=476bp
TTTCGCGCTCGAAGAGGGAAGTTTCTTTAGCTGCTGCTGAAGGCTTTTCG
ATAGAAAGAAAAGAAGGAAATTGCTTTCTGCAGCAGCGTTAAGATCTCTT
ATCATCATCATCATCCCACATAACTAAGAAAAATGGCTCGCTCTTTCTCA
AACGCTAAGCTTTTCTCTGCTCTCGTCGCTGACGGAATCTCTAACGCCAT
CTACAAAAGAGGATAACTCGGCGGCATCACAAGGCGCTGTGTCGCGGGCA
ACAGGGGGAGCTAGGAGTGCTGCTGCGATGTTGAAGAAACCAGCAGAAGA
GATGACAGGATCCAGTGAGAAGGTCTCGTGGGTCCCAGACCCAGTCACTG
GTGTCTACAGGCCGGAGAATCTCGCCAACGAGCTCGATGGGGCCGACCTC
AGAGCCATGTTCTTGAAGCACAACAACTGATCATCAAAATTAATAAGAAT
TATTATTAATATATATTTAATTCGGA
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