CN184628

Overview
NameCN184628
Unique NameCN184628
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length756
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2434 contig Csv1_Contig2434:1..756. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN184628 vs. ExPASy Swiss-Prot
Match: Y5621_ARATH (PHD finger protein At5g26210 OS=Arabidopsis thaliana GN=At5g26210 PE=1 SV=2)

HSP 1 Score: 193.741 bits (491), Expect = 8.884e-49
Identity = 96/139 (69.06%), Postives = 107/139 (76.98%), Query Frame = 3 
Query:  318 PRTVEEVFSDFKGRRAGLIKALTADVEKFYQQCDPEKENLSLFGLPNETWXXXXXXXXXXXXXXXXXXGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKKLFQMINDLPTIFEVVTGNA-KQPKD 731
            PRTVEEVF DFKGRRAG+IKALT DV++F++ CDPEKENL L+G PNE W                  GINFARDGM EKDWLSLVAVHSD+WLLAVAF+FGARFGF K +RK+LF M+NDLPTIFEVV G A KQ KD
Sbjct:    9 PRTVEEVFRDFKGRRAGMIKALTTDVQEFFRLCDPEKENLCLYGHPNEHWEVNLPAEEVPPELPEPVLGINFARDGMAEKDWLSLVAVHSDAWLLAVAFFFGARFGFDKADRKRLFNMVNDLPTIFEVVAGTAKKQGKD 147
The following BLAST results are available for this feature:
BLAST of CN184628 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y5621_ARATH8.884e-4969.06PHD finger protein At5g26210 OS=Arabidopsis thalia... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0005M22_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005M22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184628 ID=CN184628; Name=CN184628; organism=Citrus sinensis; type=EST; length=756bp
GAGGCTTTCTCTTTCTCTTTCTCTTTCCTTTTTCTCTTCTGGGTCTCTTC
TGTTTTCTGTTGTCTAATTACAAATTCAATTCAATTAATTCAAACAGATA
ATGAAAAGCAAAACACGTTAAAAAAGAAGCCCTTTTTTCCCCCCAAATCG
GAAAACGGACGAAAACCCTAACTGAGGCTTCTATCGTCAAAGCTTCTTTT
TCTGTTCCAATTTAACTCTTTTTGTTCAATACTCGAAACCCATTTGCTAG
AATTTGAAGATAATTGTTGAGAAATTAGTTAATTTTGCTTGCTATGGAAG
CGATACCGCACCCTATACCTAGAACTGTAGAGGAGGTTTTCAGCGATTTT
AAGGGCAGACGGGCTGGCTTGATTAAGGCTTTAACAGCTGATGTTGAGAA
GTTCTACCAGCAGTGCGATCCTGAAAAAGAGAACTTGAGCCTATTTGGGC
TTCCTAATGAGACATGGGAAGTTAATCTGCCTGTTGAGGAAGTGCCTCCC
GAGCTCCCTGAGCCAGTGTTAGGTATAAACTTTGCTAGAGATGGAATGCA
GGAGAAGGACTGGTTATCACTGGTTGCAGTGCACAGTGATTCATGGTTGC
TTGCTGTAGCTTTTTATTTTGGTGCACGCTTTGGATTTGGCAAAAATGAA
AGGAAGAAACTTTTCCAGATGATAAATGATCTCCCGACCATCTTTGAAGT
TGTAACAGGAAATGCTAAGCAACCAAAGGACCCTTATTTGTTGAATCCAT
TCTCCG
back to top