CN184604

Overview
NameCN184604
Unique NameCN184604
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length612
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN184604_ssr136 microsatellite CN184604_ssr136:136..150. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN184604 vs. ExPASy Swiss-Prot
Match: PP408_ARATH (Pentatricopeptide repeat-containing protein At5g39980, chloroplastic OS=Arabidopsis thaliana GN=At5g39980 PE=2 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 4.319e-55
Identity = 105/150 (70.00%), Postives = 126/150 (84.00%), Query Frame = 3 
Query:  177 WRRTPDKTTK-----YYRHPNKKAPVHLDHSVDMNELLKSISETQNEHELFALLSPYKDRQLSIRFMVSLLTREQNYQRSVAILDWINEEARYSPSVFAYNVVLRNVLRAKQWELAHGLFDEMRQRGIAPDRYTYSTLITCFGKEGMFDS 611
            WR+ P+K T        +H   +    LDH+VDM+ELL SI +TQNE ELF+LLS YKDRQLSIRFMVSLL+RE ++QRS+A+LDW++EEA+Y+PSVFAYNVVLRNVLRAKQ+++AHGLFDEMRQR +APDRYTYSTLIT FGKEGMFDS
Sbjct:   59 WRKQPEKNTTSSFQALRKHRRYQRSAFLDHNVDMDELLASIHQTQNEKELFSLLSTYKDRQLSIRFMVSLLSRENDWQRSLALLDWVHEEAKYTPSVFAYNVVLRNVLRAKQFDIAHGLFDEMRQRALAPDRYTYSTLITSFGKEGMFDS 208
The following BLAST results are available for this feature:
BLAST of CN184604 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PP408_ARATH4.319e-5570.00Pentatricopeptide repeat-containing protein At5g39... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0005M08_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005M08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184604 ID=CN184604; Name=CN184604; organism=Citrus sinensis; type=EST; length=612bp
GAGGCTTATCAGCAACTTCCGTACAGGTAGAGACACTATCATCTTCTACT
TCATTTTTACTTCCACTACTTTCTCTTAACAAATCCCAATTTTACCGCTC
AACAAAACCCAGAATCCCAATTTCCTTCGTTACTGCTTCTTCTTCTTCTT
CATCTCCTTCAAAATCCAAAGACACATGGAGAAGAACGCCAGACAAAACG
ACGAAGTATTACAGACACCCAAACAAGAAAGCCCCAGTTCACTTAGACCA
CAGTGTAGACATGAACGAGCTTTTGAAGTCGATAAGCGAAACCCAGAATG
AACACGAACTGTTTGCTTTATTGTCACCTTATAAAGACAGGCAACTTTCG
ATTCGTTTCATGGTTTCATTGCTCACGCGTGAACAAAATTATCAGAGATC
AGTGGCAATTCTCGATTGGATCAATGAAGAGGCTAGGTATTCGCCTTCAG
TGTTTGCGTACAATGTGGTCTTACGCAATGTACTGAGGGCGAAACAGTGG
GAGCTCGCCCACGGCCTGTTTGATGAAATGCGTCAGAGAGGGATTGCGCC
TGATAGGTATACTTATTCGACGCTTATAACGTGTTTTGGTAAAGAGGGCA
TGTTTGATTCTG
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