CN184590

Overview
NameCN184590
Unique NameCN184590
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length518
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5674 contig Csv1_Contig5674:78..594. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184590 vs. ExPASy Swiss-Prot
Match: PSAG_ARATH (Photosystem I reaction center subunit V, chloroplastic OS=Arabidopsis thaliana GN=PSAG PE=1 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 7.246e-43
Identity = 77/121 (63.64%), Postives = 96/121 (79.34%), Query Frame = 3
Query:  108 ASSSLFTPSTITVRKHQISPSSISFQGLRPLNTR-AKTPLPKLATSAKRNSFGGIKAELNTPLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSQRP 467
            ++S+L +P+T +      +P+SISF GLRPL    + + LPKL+T+ +++S   ++AEL+  +VISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNG THFEAGD RAKEYVSLLKS  P
Sbjct:    4 SASALLSPTTFSTAISHKNPNSISFHGLRPLRLGGSSSALPKLSTTGRKSSSAVVRAELSPSIVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGKTHFEAGDDRAKEYVSLLKSNDP 124          

HSP 2 Score: 45.0542 bits (105), Expect = 7.246e-43
Identity = 18/19 (94.74%), Postives = 19/19 (100.00%), Query Frame = 1
Query:  460 NDPVGFNIVDVLAWGSIGH 516
            NDP+GFNIVDVLAWGSIGH
Sbjct:  122 NDPIGFNIVDVLAWGSIGH 140          
BLAST of CN184590 vs. ExPASy Swiss-Prot
Match: PSAG_SPIOL (Photosystem I reaction center subunit V, chloroplastic OS=Spinacia oleracea GN=PSAG PE=1 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 3.231e-33
Identity = 66/99 (66.67%), Postives = 75/99 (75.76%), Query Frame = 3
Query:  177 SFQGLRPL--NTRAKTPLPKLATSAKRNSFGGIKAELNTPLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSQRP 467
            SF GLRPL  N  +      L+ S+ R S    +AEL+  LVISLSTGLSLFLGRFVFFNFQREN+AKQ +PEQNG++HFEAGD RAKEYVSLLKS  P
Sbjct:   36 SFSGLRPLKLNISSNNSSSSLSMSSARRSMT-CRAELSPSLVISLSTGLSLFLGRFVFFNFQRENMAKQ-VPEQNGMSHFEAGDTRAKEYVSLLKSNDP 132          

HSP 2 Score: 45.4394 bits (106), Expect = 3.231e-33
Identity = 19/19 (100.00%), Postives = 19/19 (100.00%), Query Frame = 1
Query:  460 NDPVGFNIVDVLAWGSIGH 516
            NDPVGFNIVDVLAWGSIGH
Sbjct:  130 NDPVGFNIVDVLAWGSIGH 148          
BLAST of CN184590 vs. ExPASy Swiss-Prot
Match: PSAG_HORVU (Photosystem I reaction center subunit V, chloroplastic OS=Hordeum vulgare GN=PSAG PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 2.976e-27
Identity = 56/103 (54.37%), Postives = 71/103 (68.93%), Query Frame = 3
Query:  159 ISPSSISFQGLRPLNTRAKTPLPKLATSAKRNSFGGIKAELNTPLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQNGVTHFEAGDVRAKEYVSLLKSQRP 467
            +SP +++   L P + RA      ++  A+R+     +A L   +VISLSTGLSL +GRFVFFNFQRENVAKQ +PEQNG THFEAGD RAKE+  +LKS  P
Sbjct:    9 LSPPAVAGLRLAP-SPRAAASFRGVSPPARRSV--AARAALEPSVVISLSTGLSLVMGRFVFFNFQRENVAKQ-VPEQNGKTHFEAGDERAKEFAGILKSNDP 107          

HSP 2 Score: 44.669 bits (104), Expect = 2.976e-27
Identity = 18/19 (94.74%), Postives = 19/19 (100.00%), Query Frame = 1
Query:  460 NDPVGFNIVDVLAWGSIGH 516
            NDPVGFN+VDVLAWGSIGH
Sbjct:  105 NDPVGFNLVDVLAWGSIGH 123          
BLAST of CN184590 vs. ExPASy Swiss-Prot
Match: PSAG_PEA (Photosystem I reaction center subunit V (Fragment) OS=Pisum sativum GN=PSAG PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 3.688e-13
Identity = 37/39 (94.87%), Postives = 37/39 (94.87%), Query Frame = 3
Query:  276 ELNTPLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQ 392
            ELN  LVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQ
Sbjct:    1 ELNPSLVISLSTGLSLFLGRFVFFNFQRENVAKQGLPEQ 39          
The following BLAST results are available for this feature:
BLAST of CN184590 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
PSAG_ARATH7.246e-4363.64Photosystem I reaction center subunit V, chloropla... [more]
PSAG_SPIOL3.231e-3366.67Photosystem I reaction center subunit V, chloropla... [more]
PSAG_HORVU2.976e-2754.37Photosystem I reaction center subunit V, chloropla... [more]
PSAG_PEA3.688e-1394.87Photosystem I reaction center subunit V (Fragment)... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0005M01_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005M01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184590 ID=CN184590; Name=CN184590; organism=Citrus sinensis; type=EST; length=518bp
CCCCGGGCTGCAGGATAATCCAGGAACTCAAAAACTCCATCATCCATCAA
GGCATCAACCAGAACACAAAAAAGAAGGAAAAAGAGGGGAAAAAAAGAAA
AATGGCAGCCTCATCCTCCTTGTTCACACCCTCCACCATCACCGTCCGAA
AACACCAAATTTCACCCTCCAGCATCTCATTCCAAGGCCTAAGACCCCTC
AACACCAGGGCCAAAACCCCCCTCCCCAAGCTCGCCACCTCCGCCAAAAG
AAACAGCTTCGGCGGCATTAAAGCTGAGCTGAACACACCACTTGTCATCA
GCCTCAGCACTGGCCTCTCCTTGTTCTTGGGCAGGTTCGTCTTCTTCAAC
TTCCAAAGAGAGAACGTGGCCAAACAAGGCTTGCCCGAGCAGAATGGAGT
CACCCACTTTGAAGCCGGTGATGTTCGTGCCAAGGAATATGTTAGCCTCC
TCAAATCCCAACGACCCAGTTGGCTTTAACATTGTTGATGTTCTCGCTTG
GGGTTCCATTGGCCATAT
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