CN184588

Overview
NameCN184588
Unique NameCN184588
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length558
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184588 vs. ExPASy Swiss-Prot
Match: PER32_ARATH (Peroxidase 32 OS=Arabidopsis thaliana GN=PER32 PE=1 SV=3)

HSP 1 Score: 156.377 bits (394), Expect = 8.866e-38
Identity = 76/116 (65.52%), Postives = 91/116 (78.45%), Query Frame = 1
Query:   52 SPSQAQLSPSFYSSTCPNVLNTIEDVLKKAFSSDIRIGASLIRLHFHDCFVDGCDASILLDSTNTIDSEKFAAPNNNSARGFEVIDNMKAAVERACPRVVSCADILTIAAERSVAL 399
            S S AQL+P+FY +TCP+V   + D +     SD RI AS++RLHFHDCFV+GCDASILLD+T +  +EK AAPN NSARGF VID MKAAVE ACPR VSCADILTIAA+++V L
Sbjct:   25 SISSAQLTPTFYDNTCPSVFTIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSFRTEKDAAPNANSARGFPVIDRMKAAVETACPRTVSCADILTIAAQQAVNL 140          
BLAST of CN184588 vs. ExPASy Swiss-Prot
Match: PER53_ARATH (Peroxidase 53 OS=Arabidopsis thaliana GN=PER53 PE=1 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 2.580e-37
Identity = 73/114 (64.04%), Postives = 89/114 (78.07%), Query Frame = 1
Query:   58 SQAQLSPSFYSSTCPNVLNTIEDVLKKAFSSDIRIGASLIRLHFHDCFVDGCDASILLDSTNTIDSEKFAAPNNNSARGFEVIDNMKAAVERACPRVVSCADILTIAAERSVAL 399
            S AQL+ +FYS TCPN    +   +++A  SD RIGASLIRLHFHDCFV+GCDASILLD T +I SEK A PN NSARGF V+DN+K A+E ACP VVSC+D+L +A+E SV+L
Sbjct:   28 SSAQLNATFYSGTCPNASAIVRSTIQQALQSDTRIGASLIRLHFHDCFVNGCDASILLDDTGSIQSEKNAGPNVNSARGFNVVDNIKTALENACPGVVSCSDVLALASEASVSL 141          
BLAST of CN184588 vs. ExPASy Swiss-Prot
Match: PERA2_ARMRU (Peroxidase A2 OS=Armoracia rusticana GN=HRPA2 PE=1 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 5.747e-37
Identity = 72/111 (64.86%), Postives = 87/111 (78.38%), Query Frame = 1
Query:   67 QLSPSFYSSTCPNVLNTIEDVLKKAFSSDIRIGASLIRLHFHDCFVDGCDASILLDSTNTIDSEKFAAPNNNSARGFEVIDNMKAAVERACPRVVSCADILTIAAERSVAL 399
            QL+ +FYS TCPN    +   +++AF SD RIGASLIRLHFHDCFVDGCDASILLD + +I SEK A PN NSARGF V+DN+K A+E  CP VVSC+DIL +A+E SV+L
Sbjct:    1 QLNATFYSGTCPNASAIVRSTIQQAFQSDTRIGASLIRLHFHDCFVDGCDASILLDDSGSIQSEKNAGPNANSARGFNVVDNIKTALENTCPGVVSCSDILALASEASVSL 111          
BLAST of CN184588 vs. ExPASy Swiss-Prot
Match: PER1A_ARMRU (Peroxidase C1A OS=Armoracia rusticana GN=PRXC1A PE=1 SV=2)

HSP 1 Score: 153.68 bits (387), Expect = 5.747e-37
Identity = 75/116 (64.66%), Postives = 90/116 (77.59%), Query Frame = 1
Query:   52 SPSQAQLSPSFYSSTCPNVLNTIEDVLKKAFSSDIRIGASLIRLHFHDCFVDGCDASILLDSTNTIDSEKFAAPNNNSARGFEVIDNMKAAVERACPRVVSCADILTIAAERSVAL 399
            S S AQL+P+FY ++CPNV N + D +     SD RI AS++RLHFHDCFV+GCDASILLD+T +  +EK A  N NSARGF VID MKAAVE ACPR VSCAD+LTIAA++SV L
Sbjct:   26 SLSDAQLTPTFYDNSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTL 141          
BLAST of CN184588 vs. ExPASy Swiss-Prot
Match: PER34_ARATH (Peroxidase 34 OS=Arabidopsis thaliana GN=PER34 PE=1 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 7.506e-37
Identity = 75/116 (64.66%), Postives = 90/116 (77.59%), Query Frame = 1
Query:   52 SPSQAQLSPSFYSSTCPNVLNTIEDVLKKAFSSDIRIGASLIRLHFHDCFVDGCDASILLDSTNTIDSEKFAAPNNNSARGFEVIDNMKAAVERACPRVVSCADILTIAAERSVAL 399
            S S AQL+P+FY  +CPNV N + + +     SD RI AS++RLHFHDCFV+GCDASILLD+T +  +EK A  N NSARGF VID MKAAVERACPR VSCAD+LTIAA++SV L
Sbjct:   26 SLSAAQLTPTFYDRSCPNVTNIVRETIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSFRTEKDAFGNANSARGFPVIDRMKAAVERACPRTVSCADMLTIAAQQSVTL 141          
BLAST of CN184588 vs. ExPASy Swiss-Prot
Match: PER23_ARATH (Peroxidase 23 OS=Arabidopsis thaliana GN=PER23 PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.280e-36
Identity = 74/118 (62.71%), Postives = 88/118 (74.58%), Query Frame = 1
Query:   46 EGSPSQAQLSPSFYSSTCPNVLNTIEDVLKKAFSSDIRIGASLIRLHFHDCFVDGCDASILLDSTNTIDSEKFAAPNNNSARGFEVIDNMKAAVERACPRVVSCADILTIAAERSVAL 399
            + S S AQL P FY  TCP + N I D +     +D RI ASL+RLHFHDCFV GCDASILLD++ +  +EK AAPN NS RGF+VID MKAA+ERACPR VSCADI+TIA++ SV L
Sbjct:   23 QASNSNAQLRPDFYFRTCPPIFNIIGDTIVNELRTDPRIAASLLRLHFHDCFVRGCDASILLDNSTSFRTEKDAAPNKNSVRGFDVIDRMKAAIERACPRTVSCADIITIASQISVLL 140          
BLAST of CN184588 vs. ExPASy Swiss-Prot
Match: PER33_ARATH (Peroxidase 33 OS=Arabidopsis thaliana GN=PER33 PE=1 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 1.672e-36
Identity = 73/114 (64.04%), Postives = 88/114 (77.19%), Query Frame = 1
Query:   58 SQAQLSPSFYSSTCPNVLNTIEDVLKKAFSSDIRIGASLIRLHFHDCFVDGCDASILLDSTNTIDSEKFAAPNNNSARGFEVIDNMKAAVERACPRVVSCADILTIAAERSVAL 399
            S AQL+P+FY ++CP V N + D +     SD RI  S++RLHFHDCFV+GCDASILLD+T +  +EK A  N NSARGF VID MKAAVERACPR VSCAD+LTIAA++SV L
Sbjct:   29 SDAQLTPTFYDTSCPTVTNIVRDTIVNELRSDPRIAGSILRLHFHDCFVNGCDASILLDNTTSFRTEKDALGNANSARGFPVIDRMKAAVERACPRTVSCADMLTIAAQQSVTL 142          
BLAST of CN184588 vs. ExPASy Swiss-Prot
Match: PER38_ARATH (Peroxidase 38 OS=Arabidopsis thaliana GN=PER38 PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 2.184e-36
Identity = 73/116 (62.93%), Postives = 89/116 (76.72%), Query Frame = 1
Query:   52 SPSQAQLSPSFYSSTCPNVLNTIEDVLKKAFSSDIRIGASLIRLHFHDCFVDGCDASILLDSTNTIDSEKFAAPNNNSARGFEVIDNMKAAVERACPRVVSCADILTIAAERSVAL 399
            S S AQLSPSFY  TCP V + + + +  A  SD RI AS++RLHFHDCFV+GCDASILLD+T +  +EK A  N NSARGF+VID MKAA+E+ACPR VSCAD+L IAA+ S+ L
Sbjct:   18 SLSHAQLSPSFYDKTCPQVFDIVTNTIVNALRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSFRTEKDAFGNANSARGFDVIDKMKAAIEKACPRTVSCADMLAIAAKESIVL 133          
BLAST of CN184588 vs. ExPASy Swiss-Prot
Match: PER1C_ARMRU (Peroxidase C1C (Fragment) OS=Armoracia rusticana GN=PRXC1C PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 2.184e-36
Identity = 72/114 (63.16%), Postives = 90/114 (78.95%), Query Frame = 1
Query:   58 SQAQLSPSFYSSTCPNVLNTIEDVLKKAFSSDIRIGASLIRLHFHDCFVDGCDASILLDSTNTIDSEKFAAPNNNSARGFEVIDNMKAAVERACPRVVSCADILTIAAERSVAL 399
            S AQL+P+FY ++CPNV N + D++     SD  I AS++RLHFHDCFV+GCDASILLD+T +  +EK A  N NSARGF V+D +KAAVERACPR VSCAD+LTIAA++SV L
Sbjct:    7 SNAQLTPTFYDNSCPNVSNIVRDIIINELRSDPSIAASILRLHFHDCFVNGCDASILLDNTTSFRTEKDAFGNANSARGFPVVDRIKAAVERACPRTVSCADVLTIAAQQSVNL 120          
BLAST of CN184588 vs. ExPASy Swiss-Prot
Match: PER1B_ARMRU (Peroxidase C1B OS=Armoracia rusticana GN=PRXC1B PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 2.184e-36
Identity = 73/116 (62.93%), Postives = 91/116 (78.45%), Query Frame = 1
Query:   52 SPSQAQLSPSFYSSTCPNVLNTIEDVLKKAFSSDIRIGASLIRLHFHDCFVDGCDASILLDSTNTIDSEKFAAPNNNSARGFEVIDNMKAAVERACPRVVSCADILTIAAERSVAL 399
            S S AQL+P+FY ++CPNV N + D++     SD RI AS++RLHFHDCFV+GCDASILLD+T +  +EK A  N NSARGF  +D +KAAVERACPR VSCAD+LTIAA++SV L
Sbjct:   24 SLSDAQLTPTFYDTSCPNVSNIVRDIIINELRSDPRITASILRLHFHDCFVNGCDASILLDNTTSFLTEKDALGNANSARGFPTVDRIKAAVERACPRTVSCADVLTIAAQQSVNL 139          
The following BLAST results are available for this feature:
BLAST of CN184588 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
PER32_ARATH8.866e-3865.52Peroxidase 32 OS=Arabidopsis thaliana GN=PER32 PE=... [more]
PER53_ARATH2.580e-3764.04Peroxidase 53 OS=Arabidopsis thaliana GN=PER53 PE=... [more]
PERA2_ARMRU5.747e-3764.86Peroxidase A2 OS=Armoracia rusticana GN=HRPA2 PE=1... [more]
PER1A_ARMRU5.747e-3764.66Peroxidase C1A OS=Armoracia rusticana GN=PRXC1A PE... [more]
PER34_ARATH7.506e-3764.66Peroxidase 34 OS=Arabidopsis thaliana GN=PER34 PE=... [more]
PER23_ARATH1.280e-3662.71Peroxidase 23 OS=Arabidopsis thaliana GN=PER23 PE=... [more]
PER33_ARATH1.672e-3664.04Peroxidase 33 OS=Arabidopsis thaliana GN=PER33 PE=... [more]
PER38_ARATH2.184e-3662.93Peroxidase 38 OS=Arabidopsis thaliana GN=PER38 PE=... [more]
PER1C_ARMRU2.184e-3663.16Peroxidase C1C (Fragment) OS=Armoracia rusticana G... [more]
PER1B_ARMRU2.184e-3662.93Peroxidase C1B OS=Armoracia rusticana GN=PRXC1B PE... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0005L24_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005L24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184588 ID=CN184588; Name=CN184588; organism=Citrus sinensis; type=EST; length=558bp
GAGGGTTATCTTCTCGCAGCAGCTCTTCTTGTTGCTTTTGTGCTTGAGGG
ATCACCATCTCAAGCTCAACTTTCTCCATCTTTTTATTCTTCCACATGCC
CTAATGTATTGAACACTATCGAGGATGTGCTTAAGAAAGCTTTCTCGTCC
GATATCCGGATCGGTGCCAGCCTCATCAGGCTTCATTTCCATGACTGTTT
TGTTGATGGGTGTGATGCATCGATTTTGCTGGACAGCACTAACACCATAG
ACAGCGAGAAATTTGCTGCGCCAAATAACAATTCGGCGAGGGGTTTTGAA
GTTATTGATAACATGAAAGCTGCCGTTGAAAGGGCATGTCCAAGGGTTGT
TTCCTGCGCTGATATTCTTACTATTGCGGCTGAACGATCCGTTGCTTTGG
TAATGAATTTCTATTACCAACTCCTCTTCCTGGTTAATATTTTACGCTTA
GAAGTAAATTAATATGGGTATCAGAATAAGTTAAGAGAATAATGGTAAAC
CTTTGCAGTATTAATGTAATTTTTAACTATTTTTTTCAATTAATAATAAC
CCCTATAA
back to top