CN184581

Overview
NameCN184581
Unique NameCN184581
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length452
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9540 contig Csv1_Contig9540:588..1038. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN184581 vs. ExPASy Swiss-Prot
Match: CB21_ORYSJ (Chlorophyll a-b binding protein 1, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB1R PE=2 SV=2)

HSP 1 Score: 148.288 bits (373), Expect = 2.060e-44
Identity = 71/73 (97.26%), Postives = 72/73 (98.63%), Query Frame = -1 
Query:  150 ALNPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 368
            A +PLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  193 AFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265

HSP 2 Score: 50.8322 bits (120), Expect = 2.060e-44
Identity = 23/24 (95.83%), Postives = 23/24 (95.83%), Query Frame = -3 
Query:  379 VLMGAVEGYRIAGGPLGEVTDPLY 450
            VLMGAVEGYRIAGGPLGEV DPLY
Sbjct:  166 VLMGAVEGYRIAGGPLGEVVDPLY 189
[Close]
BLAST of CN184581 vs. ExPASy Swiss-Prot
Match: CB21_CUCSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 3.501e-44
Identity = 69/73 (94.52%), Postives = 72/73 (98.63%), Query Frame = -1 
Query:  150 ALNPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 368
            + +PLGLADDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  183 SFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 255

HSP 2 Score: 51.9878 bits (123), Expect = 3.501e-44
Identity = 23/24 (95.83%), Postives = 24/24 (100.00%), Query Frame = -3 
Query:  379 VLMGAVEGYRIAGGPLGEVTDPLY 450
            VLMGAVEGYRIAGGPLGEVTDP+Y
Sbjct:  156 VLMGAVEGYRIAGGPLGEVTDPIY 179
[Close]
BLAST of CN184581 vs. ExPASy Swiss-Prot
Match: CB22_CUCSA (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 3.513e-44
Identity = 69/73 (94.52%), Postives = 72/73 (98.63%), Query Frame = -1 
Query:  150 ALNPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 368
            + +PLGLADDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  134 SFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 206

HSP 2 Score: 51.9878 bits (123), Expect = 3.513e-44
Identity = 23/24 (95.83%), Postives = 24/24 (100.00%), Query Frame = -3 
Query:  379 VLMGAVEGYRIAGGPLGEVTDPLY 450
            VLMGAVEGYRIAGGPLGEVTDP+Y
Sbjct:  107 VLMGAVEGYRIAGGPLGEVTDPIY 130
[Close]
BLAST of CN184581 vs. ExPASy Swiss-Prot
Match: CB22_ORYSJ (Chlorophyll a-b binding protein 2, chloroplastic OS=Oryza sativa subsp. japonica GN=CAB2R PE=2 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 4.561e-44
Identity = 70/73 (95.89%), Postives = 72/73 (98.63%), Query Frame = -1 
Query:  150 ALNPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 368
            + +PLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  189 SFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 261

HSP 2 Score: 50.8322 bits (120), Expect = 4.561e-44
Identity = 23/24 (95.83%), Postives = 23/24 (95.83%), Query Frame = -3 
Query:  379 VLMGAVEGYRIAGGPLGEVTDPLY 450
            VLMGAVEGYRIAGGPLGEV DPLY
Sbjct:  162 VLMGAVEGYRIAGGPLGEVVDPLY 185
[Close]
BLAST of CN184581 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 1.314e-43
Identity = 68/73 (93.15%), Postives = 72/73 (98.63%), Query Frame = -1 
Query:  150 ALNPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 368
            + +PLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  202 SFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK 274

HSP 2 Score: 51.6026 bits (122), Expect = 1.314e-43
Identity = 22/24 (91.67%), Postives = 24/24 (100.00%), Query Frame = -3 
Query:  379 VLMGAVEGYRIAGGPLGEVTDPLY 450
            +LMGAVEGYRIAGGPLGEVTDP+Y
Sbjct:  175 ILMGAVEGYRIAGGPLGEVTDPIY 198
[Close]
BLAST of CN184581 vs. ExPASy Swiss-Prot
Match: CB25_PETSP (Chlorophyll a-b binding protein 91R, chloroplastic OS=Petunia sp. GN=CAB91R PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.315e-43
Identity = 69/73 (94.52%), Postives = 72/73 (98.63%), Query Frame = -1 
Query:  150 ALNPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 368
            + +PLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  195 SFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 267

HSP 2 Score: 50.447 bits (119), Expect = 1.315e-43
Identity = 22/24 (91.67%), Postives = 23/24 (95.83%), Query Frame = -3 
Query:  379 VLMGAVEGYRIAGGPLGEVTDPLY 450
            VLMGAVEGYR+AGGPLGEV DPLY
Sbjct:  168 VLMGAVEGYRVAGGPLGEVVDPLY 191
[Close]
BLAST of CN184581 vs. ExPASy Swiss-Prot
Match: CB2G_SOLLC (Chlorophyll a-b binding protein 3C, chloroplastic OS=Solanum lycopersicum GN=CAB3C PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.315e-43
Identity = 69/73 (94.52%), Postives = 72/73 (98.63%), Query Frame = -1 
Query:  150 ALNPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 368
            + +PLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  195 SFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 267

HSP 2 Score: 50.8322 bits (120), Expect = 1.315e-43
Identity = 23/24 (95.83%), Postives = 23/24 (95.83%), Query Frame = -3 
Query:  379 VLMGAVEGYRIAGGPLGEVTDPLY 450
            VLMGAVEGYRIAGGPLGEV DPLY
Sbjct:  168 VLMGAVEGYRIAGGPLGEVVDPLY 191
[Close]
BLAST of CN184581 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 1.315e-43
Identity = 68/73 (93.15%), Postives = 71/73 (97.26%), Query Frame = -1 
Query:  150 ALNPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 368
            + +PLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL+NL DHLADPVNNNAWAYATNFVPGK
Sbjct:  195 SFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLDNLVDHLADPVNNNAWAYATNFVPGK 267

HSP 2 Score: 51.9878 bits (123), Expect = 1.315e-43
Identity = 22/24 (91.67%), Postives = 24/24 (100.00%), Query Frame = -3 
Query:  379 VLMGAVEGYRIAGGPLGEVTDPLY 450
            VLMGA+EGYR+AGGPLGEVTDPLY
Sbjct:  168 VLMGAIEGYRVAGGPLGEVTDPLY 191
[Close]
BLAST of CN184581 vs. ExPASy Swiss-Prot
Match: CB24_TOBAC (Chlorophyll a-b binding protein 40, chloroplastic OS=Nicotiana tabacum GN=CAB40 PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.714e-43
Identity = 69/73 (94.52%), Postives = 72/73 (98.63%), Query Frame = -1 
Query:  150 ALNPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 368
            + +PLGLA+DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  195 SFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 267

HSP 2 Score: 50.447 bits (119), Expect = 1.714e-43
Identity = 22/24 (91.67%), Postives = 23/24 (95.83%), Query Frame = -3 
Query:  379 VLMGAVEGYRIAGGPLGEVTDPLY 450
            VLMGAVEGYR+AGGPLGEV DPLY
Sbjct:  168 VLMGAVEGYRVAGGPLGEVVDPLY 191
[Close]
BLAST of CN184581 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 2.232e-43
Identity = 68/71 (95.77%), Postives = 71/71 (100.00%), Query Frame = -1 
Query:  150 NPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 362
            +PLGLADDP+AFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  208 DPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK 278

HSP 2 Score: 50.8322 bits (120), Expect = 2.232e-43
Identity = 20/24 (83.33%), Postives = 24/24 (100.00%), Query Frame = -3 
Query:  379 VLMGAVEGYRIAGGPLGEVTDPLY 450
            +LMGA+EGYR+AGGPLGEVTDP+Y
Sbjct:  179 ILMGAIEGYRVAGGPLGEVTDPIY 202
The following BLAST results are available for this feature:
BLAST of CN184581 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
CB21_ORYSJ2.060e-4497.26Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB21_CUCSA3.501e-4494.52Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB22_CUCSA3.513e-4494.52Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB22_ORYSJ4.561e-4495.89Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB2B_PINSY1.314e-4393.15Chlorophyll a-b binding protein type 2 member 1B, ... [more]
CB25_PETSP1.315e-4394.52Chlorophyll a-b binding protein 91R, chloroplastic... [more]
CB2G_SOLLC1.315e-4394.52Chlorophyll a-b binding protein 3C, chloroplastic ... [more]
CB27_TOBAC1.315e-4393.15Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB24_TOBAC1.714e-4394.52Chlorophyll a-b binding protein 40, chloroplastic ... [more]
CB2A_PINSY2.232e-4395.77Chlorophyll a-b binding protein type 2 member 1A, ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0005L20_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005L20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184581 ID=CN184581; Name=CN184581; organism=Citrus sinensis; type=EST; length=452bp
TTTTTTTTTTTTGAGAAAAGCAGAACAAGATCAAATTGAAGCATTTTATA
AATAATCACAACTCAAATTAAAGCTTCCATGAGCTCACAACAGATTTACA
TGATATCCAAGAAACCGAAAAGAGAAAAACTCTTATCAACCGAAGCTCAC
TTTCCGGGGACAAAGTTGGTGGCGTAGGCCCAGGCATTGTTATTGACAGG
GTCAGCCAAGTGGTCGGCCAAGTTCTCTAACGGTCCCTTGCCGGTGACAA
TGGCCTGAACGAAGAAACCAAACATGGAGAACATAGCCAACCTTCCATTC
TTGATTTCCTTAACCTTGAGCTCAGCAAAAGCCTCCGGGTCATCAGCCAA
ACCCAATGGATTCAAAGCTGCCACCTGGGTACAATGGGTCAGTCACTTCA
CCGAGCGGCCCTCCAGCAATTCTGTAACCCTCAACGGCTCCCATCAAGAC
CA
back to top