CN184575

Overview
NameCN184575
Unique NameCN184575
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length379
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9874 contig Csv1_Contig9874:54..435. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184575 vs. ExPASy Swiss-Prot
Match: RK9_ARATH (50S ribosomal protein L9, chloroplastic OS=Arabidopsis thaliana GN=RPL9 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.605e-14
Identity = 33/43 (76.74%), Postives = 42/43 (97.67%), Query Frame = -2
Query:  250 QLQRDVDKKIVVLPEIRETGEYIAQLKLHPEVTARIRLNVFAN 378
            QLQ+D+DK++V LPEIRETGEYIA+LKLHP+VTAR+++NVFAN
Sbjct:  155 QLQKDIDKRLVSLPEIRETGEYIAELKLHPDVTARVKINVFAN 197          
BLAST of CN184575 vs. ExPASy Swiss-Prot
Match: RK9_PEA (50S ribosomal protein L9, chloroplastic OS=Pisum sativum GN=RPL9 PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 2.782e-13
Identity = 34/43 (79.07%), Postives = 41/43 (95.35%), Query Frame = -2
Query:  250 QLQRDVDKKIVVLPEIRETGEYIAQLKLHPEVTARIRLNVFAN 378
            QLQR+VDK+IV LPEIRETGEYIA+LKLHP+VTA++R+NV AN
Sbjct:  152 QLQREVDKRIVNLPEIRETGEYIAELKLHPDVTAKVRVNVIAN 194          
BLAST of CN184575 vs. ExPASy Swiss-Prot
Match: RK9_IPOTF (50S ribosomal protein L9, chloroplastic OS=Ipomoea trifida GN=RPL9 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.441e-11
Identity = 32/43 (74.42%), Postives = 38/43 (88.37%), Query Frame = -2
Query:  250 QLQRDVDKKIVVLPEIRETGEYIAQLKLHPEVTARIRLNVFAN 378
            QLQR+VDK+IV LPEIRETG Y A+LKLHPEVTAR+++ V AN
Sbjct:  157 QLQREVDKRIVSLPEIRETGAYTAELKLHPEVTARVQVIVSAN 199          
The following BLAST results are available for this feature:
BLAST of CN184575 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
RK9_ARATH5.605e-1476.7450S ribosomal protein L9, chloroplastic OS=Arabido... [more]
RK9_PEA2.782e-1379.0750S ribosomal protein L9, chloroplastic OS=Pisum s... [more]
RK9_IPOTF4.441e-1174.4250S ribosomal protein L9, chloroplastic OS=Ipomoea... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0005L16_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005L16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184575 ID=CN184575; Name=CN184575; organism=Citrus sinensis; type=EST; length=379bp
ACAGAGAATGCGGAGCTGTGTAAGATTAGCTACATTCTAGAAGAGGTAAA
GGATGAATTAACAAAAACTTGAGCAGCTGATGTTAAGGGAAATTAATACA
TCTCTACACGAAAGATTACACCTAATGACCACACTTCAAACTCCGTGAGC
TCAGTATATATCATCGGCCAAATTGCCCCTTGAAAAGATAGTTGCTTGAA
AAAATTTTCTATTCAGAAGGTTGACACCATCCCAAGGTGCTTGTCTTTAG
TTAGCAAACACATTCAACCTAATTCTAGCAGTAACTTCTGGATGAAGCTT
CAGCTGTGCAATATATTCTCCTGTTTCACGGATCTCTGGAAGAACAACAA
TCTTCTTGTCTACATCCCTTTGAAGCTGT
back to top