CN184570

Overview
NameCN184570
Unique NameCN184570
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length547
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6249 contig Csv1_Contig6249:308..855. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184570 vs. ExPASy Swiss-Prot
Match: RBS_LACSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Lactuca sativa GN=RBCS PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 4.159e-45
Identity = 78/96 (81.25%), Postives = 89/96 (92.71%), Query Frame = -1
Query:  260 KEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPGV 547
            KEI+YLIR+ WIPCLEFELE G+VYREHH SPGYYDGRYWTMWKLPM+GCTD+ QV+KEVGE +KEYP++F+R+IGFDN RQVQCISFI AKPPGV
Sbjct:   85 KEIDYLIRNKWIPCLEFELEHGFVYREHHHSPGYYDGRYWTMWKLPMFGCTDSAQVMKEVGECKKEYPNAFIRVIGFDNIRQVQCISFIVAKPPGV 180          
BLAST of CN184570 vs. ExPASy Swiss-Prot
Match: RBS_GLYTA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Glycine tabacina GN=RBCS PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 8.672e-43
Identity = 74/94 (78.72%), Postives = 85/94 (90.43%), Query Frame = -1
Query:  266 KEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 547
            KE+ YL+R GWIPCLEFELE G+VYREHH+SPGYYDGRYWTMWKLPM+GCTDA+QVLKE+ E +  YP++F+RIIGFDN RQVQCISFIA KPP
Sbjct:   83 KEVEYLLRKGWIPCLEFELEHGFVYREHHRSPGYYDGRYWTMWKLPMFGCTDASQVLKELQEAKTAYPNAFIRIIGFDNVRQVQCISFIAYKPP 176          
BLAST of CN184570 vs. ExPASy Swiss-Prot
Match: RBS8_NICPL (Ribulose bisphosphate carboxylase small chain 8B, chloroplastic OS=Nicotiana plumbaginifolia GN=RBCS-8B PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 9.588e-42
Identity = 74/94 (78.72%), Postives = 83/94 (88.30%), Query Frame = -1
Query:  263 EINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 544
            EI YL++SGW+PCLEFE E+G+VYREHH SPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP ++VRIIGFDN RQVQCISFIA KP G
Sbjct:   86 EIEYLLKSGWVPCLEFETERGFVYREHHHSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWVRIIGFDNVRQVQCISFIAYKPEG 179          
BLAST of CN184570 vs. ExPASy Swiss-Prot
Match: RBS1_SOYBN (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Glycine max GN=RBCS-1 PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 9.588e-42
Identity = 73/95 (76.84%), Postives = 84/95 (88.42%), Query Frame = -1
Query:  263 KEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 547
            KE+ YL+R GWIPCLEFELE G+VYREH++SP YYDGRYWTMWKLPM+GCTDA+QVLKE+ E +  YP+ F+RIIGFDN RQVQCISFIA KPPG
Sbjct:   83 KEVEYLLRKGWIPCLEFELEHGFVYREHNRSPXYYDGRYWTMWKLPMFGCTDASQVLKELQEAKTAYPNGFIRIIGFDNVRQVQCISFIAYKPPG 177          
BLAST of CN184570 vs. ExPASy Swiss-Prot
Match: RBS_PYRPY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Pyrus pyrifolia GN=RBCS PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.252e-41
Identity = 72/95 (75.79%), Postives = 85/95 (89.47%), Query Frame = -1
Query:  263 KEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 547
            KE++YL+R  W+PCLEFELE G+VYRE+H+SPGYYDGRYWTMWKLPM+GCTD++QVLKE+ E +K YP SF+RIIGFDN RQVQCISFIA KP G
Sbjct:   88 KEVDYLLRKNWVPCLEFELETGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSSQVLKELEEAKKAYPQSFIRIIGFDNVRQVQCISFIAYKPAG 182          
BLAST of CN184570 vs. ExPASy Swiss-Prot
Match: RBS_MALSP (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Malus sp. GN=RBCS PE=2 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.252e-41
Identity = 72/95 (75.79%), Postives = 85/95 (89.47%), Query Frame = -1
Query:  263 KEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 547
            KE++YL+R  W+PCLEFELE G+VYRE+H+SPGYYDGRYWTMWKLPM+GCTD++QVLKE+ E +K YP SF+RIIGFDN RQVQCISFIA KP G
Sbjct:   88 KEVDYLLRKNWVPCLEFELEHGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDSSQVLKELEEAKKAYPQSFIRIIGFDNVRQVQCISFIAYKPAG 182          
BLAST of CN184570 vs. ExPASy Swiss-Prot
Match: RBS1A_ARATH (Ribulose bisphosphate carboxylase small chain 1A, chloroplastic OS=Arabidopsis thaliana GN=RBCS-1A PE=1 SV=2)

HSP 1 Score: 168.703 bits (426), Expect = 1.635e-41
Identity = 73/94 (77.66%), Postives = 85/94 (90.43%), Query Frame = -1
Query:  266 KEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 547
            KE++YLIR+ WIPC+EFELE G+VYREH  SPGYYDGRYWTMWKLP++GCTD+ QVLKEV E +KEYP++F+RIIGFDN RQVQCISFIA KPP
Sbjct:   83 KEVDYLIRNKWIPCVEFELEHGFVYREHGNSPGYYDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPNAFIRIIGFDNTRQVQCISFIAYKPP 176          
BLAST of CN184570 vs. ExPASy Swiss-Prot
Match: RBS_GLYTO (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Glycine tomentella GN=RBCS PE=3 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 2.136e-41
Identity = 72/94 (76.60%), Postives = 84/94 (89.36%), Query Frame = -1
Query:  266 KEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 547
            KE+ YL+R GWIPCLEFELE G+VYRE+H+SPGYYDGRYWTMWKLP++GCTDA+QVLKE+ E +  YP+ F+RIIGFDN RQVQCISFIA KPP
Sbjct:   83 KEVEYLLRKGWIPCLEFELEHGFVYRENHRSPGYYDGRYWTMWKLPVFGCTDASQVLKELQEAKTAYPNGFIRIIGFDNVRQVQCISFIAYKPP 176          
BLAST of CN184570 vs. ExPASy Swiss-Prot
Match: RBS3_SOLTU (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Solanum tuberosum GN=RBCS-3 PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 2.790e-41
Identity = 72/95 (75.79%), Postives = 84/95 (88.42%), Query Frame = -1
Query:  263 KEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 547
            KE+ YL+++GW+PCLEFE E G+VYRE+HKSPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP +++RIIGFDN RQVQCISFIA KP G
Sbjct:   86 KEVEYLLKNGWVPCLEFETEHGFVYRENHKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEG 180          
BLAST of CN184570 vs. ExPASy Swiss-Prot
Match: RBS1_SOLTU (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Solanum tuberosum GN=RBCS-1 PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 2.790e-41
Identity = 72/95 (75.79%), Postives = 84/95 (88.42%), Query Frame = -1
Query:  263 KEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 547
            KE+ YL+++GW+PCLEFE E G+VYRE+HKSPGYYDGRYWTMWKLPM+GCTDATQVL EV E +K YP +++RIIGFDN RQVQCISFIA KP G
Sbjct:   86 KEVEYLLKNGWVPCLEFETEHGFVYRENHKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQECKKSYPQAWIRIIGFDNVRQVQCISFIAYKPEG 180          
The following BLAST results are available for this feature:
BLAST of CN184570 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 117
Match NameE-valueIdentityDescription
RBS_LACSA4.159e-4581.25Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_GLYTA8.672e-4378.72Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS8_NICPL9.588e-4278.72Ribulose bisphosphate carboxylase small chain 8B, ... [more]
RBS1_SOYBN9.588e-4276.84Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS_PYRPY1.252e-4175.79Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_MALSP1.252e-4175.79Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1A_ARATH1.635e-4177.66Ribulose bisphosphate carboxylase small chain 1A, ... [more]
RBS_GLYTO2.136e-4176.60Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS3_SOLTU2.790e-4175.79Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS1_SOLTU2.790e-4175.79Ribulose bisphosphate carboxylase small chain 1, c... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0005L13_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005L13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184570 ID=CN184570; Name=CN184570; organism=Citrus sinensis; type=EST; length=547bp
ACTCATTAAACTGAACATCCGAGACCCAGATTAATGAAACTGAAAACAAA
GGATTCAATTATTAAAATATATATAAAAAAAAAAAAAGAAGCCAAAGTCG
GGGAGAAAACCAAAAAAGTTTGAGCAGCAGCAACAGCAGCCTAAGTACAA
ATTAAACGCAAACCGAACCCCCATTGATCGAATGATCATTATGGGGGTTA
CACATAATAATAATCAACAATATTGCATGGGTGGTTACACAAATTTAATT
GGGAACCTAGACGCCTGGTGGCTTGGCAGCAATGAAACTGATGCACTGCA
CTTGACGCTTGTTGTCAAATCCGATAATTCGGACGAATGAATGTGGGTAT
TCCTTCTGGACCTCCCCAACCTCCTTCAAAACCTGGGTTGCATCTGTGCA
CCCATACATGGGCAGCTTCCACATTGTCCAGTAGCGTCCATCGTAGTATC
CTGGTGACTTGTGGTGCTCACGGTACACCCATCCTTTCTCCAACTCGAAT
TCCAAGCAGGGAATCCAGCCGGAGCGGATAAGGTAATTGATTTCCTT
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