CN184569

Overview
NameCN184569
Unique NameCN184569
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length332
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN184569_ssr129 microsatellite CN184569_ssr129:129..140. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10458 contig Csv1_Contig10458:1886..2217. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184569 vs. ExPASy Swiss-Prot
Match: SCL8_ARATH (Scarecrow-like protein 8 OS=Arabidopsis thaliana GN=SCL8 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.670e-18
Identity = 42/56 (75.00%), Postives = 49/56 (87.50%), Query Frame = -2
Query:  149 MAGFELKPMSQIIAESMRTRLSSGNRVNPGFTVKEENGGICFGWMGRTLTVVSAWR 316
            MAGFEL P+S+ IAESM++R   GNRV+PGFTVKE+NGG+CFGWMGR LTV SAWR
Sbjct:  588 MAGFELMPLSEKIAESMKSR---GNRVHPGFTVKEDNGGVCFGWMGRALTVASAWR 640          
The following BLAST results are available for this feature:
BLAST of CN184569 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
SCL8_ARATH1.670e-1875.00Scarecrow-like protein 8 OS=Arabidopsis thaliana G... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0005L12_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005L12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184569 ID=CN184569; Name=CN184569; organism=Citrus sinensis; type=EST; length=332bp
TTTTTTTTACAAAACGCTACTCCTTTATTATTATTTCCTTTAGTGGGCCT
CTTTTTTTTTCTTTCCCTTTCCATTTTCTCAGGAAAACGTTCGAAAATAT
AATAACAATTAATAATATTAAATTAAAAAGAGAGAGAGAGTGAATTCAAC
GCCAGGCAGATACGACGGTGAGAGTTCGACCCATCCAGCCAAAGCAAATG
CCGCCGTTTTCTTCTTTGACGGTGAACCCCGGGTTCACTCGGTTCCCGGA
ACTCAGTCGAGTCCGCATTGACTCGGCAATGATTTGACTCATTGGCTTCA
ACTCGAACCCAGCCATCCCCCATGGGGGCTCG
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