CN184566

Overview
NameCN184566
Unique NameCN184566
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length248
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5203 contig Csv1_Contig5203:45..292. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184566 vs. ExPASy Swiss-Prot
Match: MSRA_SOLLC (Peptide methionine sulfoxide reductase (Fragment) OS=Solanum lycopersicum GN=E4 PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.631e-24
Identity = 51/65 (78.46%), Postives = 55/65 (84.62%), Query Frame = 2
Query:   53 NTTNPAVGPDLDRPDNPGHEFAQFGAGCFW*VELAFQRVVGVSKTEVGYSLGNVPDPNYRLVCSG 247
            +TTNPA+ PDLD PD PG EFAQF AGCFW VELAFQRV GV KTEVGYS GNV DPNY+L+CSG
Sbjct:   10 STTNPALDPDLDSPDQPGLEFAQFAAGCFWGVELAFQRVGGVVKTEVGYSQGNVHDPNYKLICSG 74          
BLAST of CN184566 vs. ExPASy Swiss-Prot
Match: MSRA_FRAAN (Peptide methionine sulfoxide reductase OS=Fragaria ananassa PE=2 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 9.356e-22
Identity = 47/66 (71.21%), Postives = 52/66 (78.79%), Query Frame = 2
Query:   50 NNTTNPAVGPDLDRPDNPGHEFAQFGAGCFW*VELAFQRVVGVSKTEVGYSLGNVPDPNYRLVCSG 247
            + T NPA+  D D P+NPGHE AQF +GCFW  EL FQRVVGV KTEVGYS G+V DPNYRLVCSG
Sbjct:    4 STTNNPALDLDSDTPENPGHELAQFASGCFWGSELRFQRVVGVIKTEVGYSQGHVHDPNYRLVCSG 69          
BLAST of CN184566 vs. ExPASy Swiss-Prot
Match: MSRA_LACSA (Peptide methionine sulfoxide reductase OS=Lactuca sativa PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.672e-16
Identity = 41/60 (68.33%), Postives = 46/60 (76.67%), Query Frame = 2
Query:   68 AVGPDLDRPDNPGHEFAQFGAGCFW*VELAFQRVVGVSKTEVGYSLGNVPDPNYRLVCSG 247
            A GPD D P  PG +FAQFGAGCFW VELAFQRV GVSKTEVGY+ G + +P Y  +CSG
Sbjct:   80 AQGPDDDIPA-PGQQFAQFGAGCFWGVELAFQRVPGVSKTEVGYTQGFLHNPTYNDICSG 138          
BLAST of CN184566 vs. ExPASy Swiss-Prot
Match: MSRA_BRANA (Peptide methionine sulfoxide reductase OS=Brassica napus GN=PMSR PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.709e-15
Identity = 43/75 (57.33%), Postives = 50/75 (66.67%), Query Frame = 2
Query:   20 GIGEMAGP*DNNTTNPAVGPDLDRPDNPGHEFAQFGAGCFW*VELAFQRVVGVSKTEVGYSLGNVPDPNYRLVCS 244
            G G    P    ++  A GPD D P +PG +FAQFGAGCFW  ELA+QRV GV+KTEVGYS G V +P Y  VCS
Sbjct:   62 GFGSRPQPDPAASSAIAQGPDDDVP-SPGQQFAQFGAGCFWGAELAYQRVPGVTKTEVGYSHGFVDNPTYEDVCS 135          
BLAST of CN184566 vs. ExPASy Swiss-Prot
Match: MSRA_ARATH (Peptide methionine sulfoxide reductase OS=Arabidopsis thaliana GN=PMSR PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 2.915e-15
Identity = 41/67 (61.19%), Postives = 50/67 (74.63%), Query Frame = 2
Query:   47 DNNTTNPAVGPDLDRPDNPGHEFAQFGAGCFW*VELAFQRVVGVSKTEVGYSLGNVPDPNYRLVCSG 247
            D ++   A GPD D P + G +FAQFGAGCFW VELA+QRV GV+KTEVGYS G V +P+Y  VC+G
Sbjct:   72 DPSSAAIAQGPDDDVPSS-GQQFAQFGAGCFWGVELAYQRVPGVTKTEVGYSHGIVHNPSYEDVCTG 137          
BLAST of CN184566 vs. ExPASy Swiss-Prot
Match: MSRA_DICDI (Peptide methionine sulfoxide reductase OS=Dictyostelium discoideum GN=msrA PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.430e-11
Identity = 30/44 (68.18%), Postives = 33/44 (75.00%), Query Frame = 2
Query:  116 AQFGAGCFW*VELAFQRVVGVSKTEVGYSLGNVPDPNYRLVCSG 247
            A F AGCFW VEL FQRV GV+KT VGY+ G V +P YR VCSG
Sbjct:    4 ATFAAGCFWSVELLFQRVAGVTKTRVGYTNGTVENPTYRQVCSG 47          
The following BLAST results are available for this feature:
BLAST of CN184566 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
MSRA_SOLLC2.631e-2478.46Peptide methionine sulfoxide reductase (Fragment) ... [more]
MSRA_FRAAN9.356e-2271.21Peptide methionine sulfoxide reductase OS=Fragaria... [more]
MSRA_LACSA7.672e-1668.33Peptide methionine sulfoxide reductase OS=Lactuca ... [more]
MSRA_BRANA1.709e-1557.33Peptide methionine sulfoxide reductase OS=Brassica... [more]
MSRA_ARATH2.915e-1561.19Peptide methionine sulfoxide reductase OS=Arabidop... [more]
MSRA_DICDI7.430e-1168.18Peptide methionine sulfoxide reductase OS=Dictyost... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0005L10_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005L10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184566 ID=CN184566; Name=CN184566; organism=Citrus sinensis; type=EST; length=248bp
CTTTTAGCCTGCAGTTGCGGGAATTGGGGAAATGGCCGGCCCTTGAGATA
ACAACACGACGAATCCAGCTGTGGGTCCGGATCTGGACCGACCGGACAAT
CCGGGTCACGAGTTCGCCCAATTCGGAGCCGGGTGCTTCTGGTGAGTGGA
GCTGGCGTTTCAGCGTGTGGTGGGCGTATCCAAGACTGAAGTGGGGTATT
CACTAGGCAACGTCCCTGATCCCAACTACAGACTCGTTTGCTCCGGAA
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