CN184563

Overview
NameCN184563
Unique NameCN184563
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length363
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2438 contig Csv1_Contig2438:332..693. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184563 vs. ExPASy Swiss-Prot
Match: 21KD_DAUCA (21 kDa protein OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 9.435e-19
Identity = 37/64 (57.81%), Postives = 49/64 (76.56%), Query Frame = -1
Query:   55 FLWHISNVQTWVSAALTDDDTCLDGLA--ALDGEVKDSIRTRVSNVAEVTSNALALVDQLAKTH 240
            F + +SNV+TWVSAALTD+ TC+DG A   +DG++K+S+R +V  VA VTSNALALV+  A  H
Sbjct:  128 FTFRMSNVETWVSAALTDETTCMDGFAGKGMDGKIKESVRAQVVAVARVTSNALALVNNFAAKH 191          

HSP 2 Score: 36.965 bits (84), Expect = 9.435e-19
Identity = 16/38 (42.11%), Postives = 25/38 (65.79%), Query Frame = -3
Query:  239 REQQPIDDCLKLMGDSIDRLSKSVQELRGISGANDRDF 352
            R+   I DCL+ + DS+DR+S+S  E++ +S A   DF
Sbjct:   91 RQYAAIHDCLEEVEDSLDRVSRSCDEMKNLSHAKGNDF 128          
The following BLAST results are available for this feature:
BLAST of CN184563 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
21KD_DAUCA9.435e-1957.8121 kDa protein OS=Daucus carota PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0005L09_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005L09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184563 ID=CN184563; Name=CN184563; organism=Citrus sinensis; type=EST; length=363bp
AAAGGCAATAATGCTTTATTATCAAATATCAACAAACATTCACCGTTATT
CTAAATGTGTTTTGGCAAGCTGGTCAACCAAGGCAAGTGCATTGCTGGTG
ACTTCAGCAACATTTGAAACCCTAGTCCTAATGGAATCCTTCACCTCACC
ATCCAAGGCGGCCAGCCCATCAAGACAAGTATCATCATCAGTCAAAGCAG
CACTAACCCATGTTTGAACATTGCTAATGTGCCACAAAAAAGTCACGATC
ATTTGCTCCACTGATTCCTCTCAGTTCTTGAACCGACTTGCTAAGCCGGT
CAATCGAATCACCCATCAACTTCAGGCAGTCGTCAATTGGTTGTTGCTCC
CTTTGGCTTCAAG
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