CN184558

Overview
NameCN184558
Unique NameCN184558
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length482
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig395 contig Csv1_Contig395:332..813. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN184558 vs. ExPASy Swiss-Prot
Match: RL23A_DAUCA (60S ribosomal protein L23a OS=Daucus carota GN=RPL23A PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 3.702e-43
Identity = 89/99 (89.90%), Postives = 94/99 (94.95%), Query Frame = -3 
Query:  175 RYPRI*CSHRGTKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 471
            +YPRI  + R  KLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRA+K+KIKDAVKKMY+IQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct:   57 KYPRISATPRN-KLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRANKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
[Close]
BLAST of CN184558 vs. ExPASy Swiss-Prot
Match: R23A2_ARATH (60S ribosomal protein L23a-2 OS=Arabidopsis thaliana GN=RPL23AB PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 8.248e-43
Identity = 88/99 (88.89%), Postives = 93/99 (93.94%), Query Frame = -3 
Query:  175 RYPRI*CSHRGTKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 471
            +YP+I  + R  KLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRADK+KIKDAVKKMY+IQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct:   57 KYPKISATPRN-KLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
[Close]
BLAST of CN184558 vs. ExPASy Swiss-Prot
Match: R23A1_ARATH (60S ribosomal protein L23a-1 OS=Arabidopsis thaliana GN=RPL23AA PE=2 SV=2)

HSP 1 Score: 172.555 bits (436), Expect = 8.248e-43
Identity = 88/99 (88.89%), Postives = 93/99 (93.94%), Query Frame = -3 
Query:  175 RYPRI*CSHRGTKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 471
            +YP+I  + R  KLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRADK+KIKDAVKKMY+IQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct:   57 KYPKISATPRN-KLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
[Close]
BLAST of CN184558 vs. ExPASy Swiss-Prot
Match: RL23A_TOBAC (60S ribosomal protein L23a OS=Nicotiana tabacum GN=RPL23A PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 2.400e-42
Identity = 88/99 (88.89%), Postives = 92/99 (92.93%), Query Frame = -3 
Query:  175 RYPRI*CSHRGTKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 471
            +YPRI    R  KLDQY ILKYPLTTESAMKKIEDNNTLVFIVDI+ADK+KIKDAVKKMY+IQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII
Sbjct:   57 KYPRISAPGRN-KLDQYGILKYPLTTESAMKKIEDNNTLVFIVDIKADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154
[Close]
BLAST of CN184558 vs. ExPASy Swiss-Prot
Match: RL23A_FRIAG (60S ribosomal protein L23A OS=Fritillaria agrestis GN=RPL23A PE=2 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 6.982e-42
Identity = 87/99 (87.88%), Postives = 91/99 (91.92%), Query Frame = -3 
Query:  175 RYPRI*CSHRGTKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 471
            +YPRI    R  KLD YQILKYPLTTESAMKKIEDNNTLVFIVDIRADK+KIK AVKKMY+IQTKKVNTLIRPDGTKKAYVRLTPDYDALD+ANKIGII
Sbjct:   57 KYPRISAPPRN-KLDHYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKAAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDIANKIGII 154
[Close]
BLAST of CN184558 vs. ExPASy Swiss-Prot
Match: RL23A_RAT (60S ribosomal protein L23a OS=Rattus norvegicus GN=Rpl23a PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 3.711e-35
Identity = 74/99 (74.75%), Postives = 84/99 (84.85%), Query Frame = -3 
Query:  175 RYPRI*CSHRGTKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 471
            +YPR   + R  KLD Y I+K+PLTTESAMKKIEDNNTLVFIVD++A+K +IK AVKK+Y+I   KVNTLIRPDG KKAYVRL PDYDALDVANKIGII
Sbjct:   59 KYPRK-SAPRRNKLDHYAIIKFPLTTESAMKKIEDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVANKIGII 156
[Close]
BLAST of CN184558 vs. ExPASy Swiss-Prot
Match: RL23A_MOUSE (60S ribosomal protein L23a OS=Mus musculus GN=Rpl23a PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 3.711e-35
Identity = 74/99 (74.75%), Postives = 84/99 (84.85%), Query Frame = -3 
Query:  175 RYPRI*CSHRGTKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 471
            +YPR   + R  KLD Y I+K+PLTTESAMKKIEDNNTLVFIVD++A+K +IK AVKK+Y+I   KVNTLIRPDG KKAYVRL PDYDALDVANKIGII
Sbjct:   59 KYPRK-SAPRRNKLDHYAIIKFPLTTESAMKKIEDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVANKIGII 156
[Close]
BLAST of CN184558 vs. ExPASy Swiss-Prot
Match: RL23A_HUMAN (60S ribosomal protein L23a OS=Homo sapiens GN=RPL23A PE=1 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 3.711e-35
Identity = 74/99 (74.75%), Postives = 84/99 (84.85%), Query Frame = -3 
Query:  175 RYPRI*CSHRGTKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 471
            +YPR   + R  KLD Y I+K+PLTTESAMKKIEDNNTLVFIVD++A+K +IK AVKK+Y+I   KVNTLIRPDG KKAYVRL PDYDALDVANKIGII
Sbjct:   59 KYPRK-SAPRRNKLDHYAIIKFPLTTESAMKKIEDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVANKIGII 156
[Close]
BLAST of CN184558 vs. ExPASy Swiss-Prot
Match: RL23A_BOVIN (60S ribosomal protein L23a OS=Bos taurus GN=RPL23A PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 3.711e-35
Identity = 74/99 (74.75%), Postives = 84/99 (84.85%), Query Frame = -3 
Query:  175 RYPRI*CSHRGTKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 471
            +YPR   + R  KLD Y I+K+PLTTESAMKKIEDNNTLVFIVD++A+K +IK AVKK+Y+I   KVNTLIRPDG KKAYVRL PDYDALDVANKIGII
Sbjct:   59 KYPRK-SAPRRNKLDHYAIIKFPLTTESAMKKIEDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVANKIGII 156
[Close]
BLAST of CN184558 vs. ExPASy Swiss-Prot
Match: RL25_PUCGR (60S ribosomal protein L25 OS=Puccinia graminis PE=2 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 4.694e-30
Identity = 64/99 (64.65%), Postives = 80/99 (80.81%), Query Frame = -3 
Query:  175 RYPRI*CSHRGTKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKRKIKDAVKKMYEIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 471
            +YPR    H   ++D Y+ L  PL TESAMKKIEDNNTL+FIVD++A+KR+I DAVKK+Y++   +VNTLIRPDG KKA+VRLTP+ DALD+ANKIG I
Sbjct:   61 KYPRTSVPH-APRMDAYRTLVRPLNTESAMKKIEDNNTLLFIVDLKANKRQIADAVKKLYDVTPLRVNTLIRPDGKKKAFVRLTPEVDALDIANKIGFI 158
The following BLAST results are available for this feature:
BLAST of CN184558 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
RL23A_DAUCA3.702e-4389.9060S ribosomal protein L23a OS=Daucus carota GN=RPL... [more]
R23A2_ARATH8.248e-4388.8960S ribosomal protein L23a-2 OS=Arabidopsis thalia... [more]
R23A1_ARATH8.248e-4388.8960S ribosomal protein L23a-1 OS=Arabidopsis thalia... [more]
RL23A_TOBAC2.400e-4288.8960S ribosomal protein L23a OS=Nicotiana tabacum GN... [more]
RL23A_FRIAG6.982e-4287.8860S ribosomal protein L23A OS=Fritillaria agrestis... [more]
RL23A_RAT3.711e-3574.7560S ribosomal protein L23a OS=Rattus norvegicus GN... [more]
RL23A_MOUSE3.711e-3574.7560S ribosomal protein L23a OS=Mus musculus GN=Rpl2... [more]
RL23A_HUMAN3.711e-3574.7560S ribosomal protein L23a OS=Homo sapiens GN=RPL2... [more]
RL23A_BOVIN3.711e-3574.7560S ribosomal protein L23a OS=Bos taurus GN=RPL23A... [more]
RL25_PUCGR4.694e-3064.6560S ribosomal protein L25 OS=Puccinia graminis PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0005L06_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005L06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184558 ID=CN184558; Name=CN184558; organism=Citrus sinensis; type=EST; length=482bp
ATTTTGATTTAATGAGATGCAGTTAATGGCAGAACAAGTTTAACGATGAT
CTTAATAGGCATCCAATGCAAAAACTCAATATAAAAGATAGATCTGAGTA
CATATTTGAAAATAACCAAAACGAAATTGGAGTCCTAACAAAACTGTTGA
CAATACACACGAACTCACTCCTTAGATAATTCCAATCTTGTTGGCCACAT
CCAATGCATCATAATCCGGAGTCAGCCTAACATATGCCTTCTTAGTTCCA
TCAGGTCTGATCAAAGTGTTGACTTTCTTGGTCTGAATTTCGTACATTTT
CTTGACGGCATCCTTGATCTTCCTCTTATCAGCACGGATGTCAACAATGA
AAACCAAGGTATTATTGTCCTCGATCTTCTTCATAGCTGATTCGGTAGTC
AAGGGATACTTGAGAATTTGGTACTGGTCCAACTTTGTTCCTCGGTGGGA
GCACTAAATGCGGGGATACCTTTGGGGGGGTT
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