CN184543

Overview
NameCN184543
Unique NameCN184543
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length436
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6163 contig Csv1_Contig6163:165..600. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN184543 vs. ExPASy Swiss-Prot
Match: H4_SILLA (Histone H4 OS=Silene latifolia GN=SlH4 PE=3 SV=3)

HSP 1 Score: 155.992 bits (393), Expect = 6.040e-38
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = -2 
Query:  199 HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 435
            HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT
Sbjct:   19 HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 97
[Close]
BLAST of CN184543 vs. ExPASy Swiss-Prot
Match: H4_PEA (Histone H4 OS=Pisum sativum PE=1 SV=2)

HSP 1 Score: 155.992 bits (393), Expect = 6.040e-38
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = -2 
Query:  199 HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 435
            HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT
Sbjct:   19 HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 97
[Close]
BLAST of CN184543 vs. ExPASy Swiss-Prot
Match: H4_MAIZE (Histone H4 OS=Zea mays GN=H4C7 PE=1 SV=2)

HSP 1 Score: 155.992 bits (393), Expect = 6.040e-38
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = -2 
Query:  199 HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 435
            HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT
Sbjct:   19 HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 97
[Close]
BLAST of CN184543 vs. ExPASy Swiss-Prot
Match: H4_LOLTE (Histone H4 OS=Lolium temulentum PE=3 SV=2)

HSP 1 Score: 155.992 bits (393), Expect = 6.040e-38
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = -2 
Query:  199 HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 435
            HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT
Sbjct:   19 HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 97
[Close]
BLAST of CN184543 vs. ExPASy Swiss-Prot
Match: H4_FLATR (Histone H4 OS=Flaveria trinervia GN=hh4 PE=3 SV=3)

HSP 1 Score: 155.992 bits (393), Expect = 6.040e-38
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = -2 
Query:  199 HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 435
            HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT
Sbjct:   19 HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 97
[Close]
BLAST of CN184543 vs. ExPASy Swiss-Prot
Match: H4_EUCGL (Histone H4 OS=Eucalyptus globulus PE=3 SV=3)

HSP 1 Score: 155.992 bits (393), Expect = 6.040e-38
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = -2 
Query:  199 HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 435
            HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT
Sbjct:   19 HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 97
[Close]
BLAST of CN184543 vs. ExPASy Swiss-Prot
Match: H4_CHEMJ (Histone H4 OS=Chelidonium majus PE=3 SV=3)

HSP 1 Score: 155.992 bits (393), Expect = 6.040e-38
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = -2 
Query:  199 HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 435
            HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT
Sbjct:   19 HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 97
[Close]
BLAST of CN184543 vs. ExPASy Swiss-Prot
Match: H4_ARATH (Histone H4 OS=Arabidopsis thaliana GN=At1g07660 PE=1 SV=2)

HSP 1 Score: 155.992 bits (393), Expect = 6.040e-38
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = -2 
Query:  199 HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 435
            HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT
Sbjct:   19 HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 97
[Close]
BLAST of CN184543 vs. ExPASy Swiss-Prot
Match: H42_WHEAT (Histone H4 variant TH091 OS=Triticum aestivum PE=3 SV=2)

HSP 1 Score: 155.992 bits (393), Expect = 6.040e-38
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = -2 
Query:  199 HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 435
            HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT
Sbjct:   19 HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 97
[Close]
BLAST of CN184543 vs. ExPASy Swiss-Prot
Match: H41_WHEAT (Histone H4 variant TH011 OS=Triticum aestivum PE=3 SV=2)

HSP 1 Score: 155.992 bits (393), Expect = 6.040e-38
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = -2 
Query:  199 HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 435
            HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT
Sbjct:   19 HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQGRT 97
The following BLAST results are available for this feature:
BLAST of CN184543 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
H4_SILLA6.040e-38100.00Histone H4 OS=Silene latifolia GN=SlH4 PE=3 SV=3[more]
H4_PEA6.040e-38100.00Histone H4 OS=Pisum sativum PE=1 SV=2[more]
H4_MAIZE6.040e-38100.00Histone H4 OS=Zea mays GN=H4C7 PE=1 SV=2[more]
H4_LOLTE6.040e-38100.00Histone H4 OS=Lolium temulentum PE=3 SV=2[more]
H4_FLATR6.040e-38100.00Histone H4 OS=Flaveria trinervia GN=hh4 PE=3 SV=3[more]
H4_EUCGL6.040e-38100.00Histone H4 OS=Eucalyptus globulus PE=3 SV=3[more]
H4_CHEMJ6.040e-38100.00Histone H4 OS=Chelidonium majus PE=3 SV=3[more]
H4_ARATH6.040e-38100.00Histone H4 OS=Arabidopsis thaliana GN=At1g07660 PE... [more]
H42_WHEAT6.040e-38100.00Histone H4 variant TH091 OS=Triticum aestivum PE=3... [more]
H41_WHEAT6.040e-38100.00Histone H4 variant TH011 OS=Triticum aestivum PE=3... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0005K21_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005K21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184543 ID=CN184543; Name=CN184543; organism=Citrus sinensis; type=EST; length=436bp
GAGGGATTCTCATTGCAAAAGATGAAAACACCAATGAACCAAAAAAATAA
AAAACCCCTAGGAAACGGCAAATACAAGTTGCCTCCAATTTAAACCCACT
CGCTAGACACAACCACGTTCACTGATTTACAGGAAAAAAGGAAAACCCTA
AAACACAAAATACAAAACGACGCCACATCAACCACCAAACCCATAGAGAG
TCCTGCCCTGCCTCTTGAGCGCATAAACGACATCCATGGCGGTCACCGTC
TTTCGGCGAGCGTGCTCAGTGTAGGTCACAGCATCGCGAATGACGTTCTC
CAAAAAGATCTTGAGGACGCCGCGTGTCTCCTCGTAGATGAGACCGCTGA
TTCTCTTAACGCCTCCTCTTCTGGCCAAACGGCGAATAGCCGGCTTGGTG
ATGCCCTGAATGTTATCACGCAACACCTTGCGATGC
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