CN184542

Overview
NameCN184542
Unique NameCN184542
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length617
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3748 contig Csv1_Contig3748:22..638. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184542 vs. ExPASy Swiss-Prot
Match: NEK2_ARATH (Serine/threonine-protein kinase Nek2 OS=Arabidopsis thaliana GN=NEK2 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.100e-33
Identity = 72/85 (84.71%), Postives = 75/85 (88.24%), Query Frame = -1
Query:  363 SNSSDQNATAGASSRNSSDARRHRFDTSSYQQRAEALEGLLEFSAKLLQQERYDELGVLLKPFGPGKVSPRETAIWLTKSIKENT 617
            S SSDQNATAGASSR SS  RR RFD SSYQQRAEALEGLLEFSA+LLQ ERYDEL VLL+PFGPGKVSPRETAIWL+KS KE T
Sbjct:  516 SESSDQNATAGASSRASSGVRRQRFDPSSYQQRAEALEGLLEFSARLLQDERYDELNVLLRPFGPGKVSPRETAIWLSKSFKETT 600          
BLAST of CN184542 vs. ExPASy Swiss-Prot
Match: NEK1_ARATH (Serine/threonine-protein kinase Nek1 OS=Arabidopsis thaliana GN=NEK1 PE=2 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 7.469e-31
Identity = 69/88 (78.41%), Postives = 77/88 (87.50%), Query Frame = -1
Query:  357 SNSSDQNATAGASSRN-SSDARRHRFDTSSYQQRAEALEGLLEFSAKLLQQERYDELGVLLKPFGPGKVSPRETAIWLTKSIKENTAK 617
            S+SSDQNATAGASS   SS +RR RFD SSY+QRA+ALEGLLEFSA+LLQ+ RYDEL VLLKPFGPGKVSPRETAIW+ KS+KEN  K
Sbjct:  507 SSSSDQNATAGASSHTTSSSSRRCRFDPSSYRQRADALEGLLEFSARLLQEGRYDELNVLLKPFGPGKVSPRETAIWIAKSLKENRDK 594          
BLAST of CN184542 vs. ExPASy Swiss-Prot
Match: NEK3_ARATH (Serine/threonine-protein kinase Nek3 OS=Arabidopsis thaliana GN=NEK3 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.664e-30
Identity = 70/86 (81.40%), Postives = 76/86 (88.37%), Query Frame = -1
Query:  363 SNSSDQNATAGASSRNSSDA-RRHRFDTSSYQQRAEALEGLLEFSAKLLQQERYDELGVLLKPFGPGKVSPRETAIWLTKSIKENT 617
            S+ SDQNATAGASSR SS A RR RFD SSY+QRAEALEGLLEFSA+LL  ERYDEL VLLKPFGPGKVSPRETAIWL+KS KE++
Sbjct:  476 SDLSDQNATAGASSRASSGASRRQRFDPSSYRQRAEALEGLLEFSARLLIDERYDELNVLLKPFGPGKVSPRETAIWLSKSFKESS 561          
BLAST of CN184542 vs. ExPASy Swiss-Prot
Match: NEK2_ORYSJ (Serine/threonine-protein kinase Nek2 OS=Oryza sativa subsp. japonica GN=NEK2 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.838e-30
Identity = 67/86 (77.91%), Postives = 77/86 (89.53%), Query Frame = -1
Query:  360 SNSSDQNATAGASSRNSSDARRHRFDTSSYQQRAEALEGLLEFSAKLLQQERYDELGVLLKPFGPGKVSPRETAIWLTKSIKENTA 617
            S+SS +NATA ASSR S+D+R+ RFDTSS+QQRAEALEGLLEFSA+LLQQERY+ELG+LLKPFGP K SPRETAIWLTKS KE  +
Sbjct:  507 SDSSGRNATA-ASSRGSNDSRQQRFDTSSFQQRAEALEGLLEFSAQLLQQERYEELGILLKPFGPEKASPRETAIWLTKSFKETAS 591          
BLAST of CN184542 vs. ExPASy Swiss-Prot
Match: NEK2_ORYSI (Serine/threonine-protein kinase Nek2 OS=Oryza sativa subsp. indica GN=NEK2 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 2.838e-30
Identity = 67/86 (77.91%), Postives = 77/86 (89.53%), Query Frame = -1
Query:  360 SNSSDQNATAGASSRNSSDARRHRFDTSSYQQRAEALEGLLEFSAKLLQQERYDELGVLLKPFGPGKVSPRETAIWLTKSIKENTA 617
            S+SS +NATA ASSR S+D+R+ RFDTSS+QQRAEALEGLLEFSA+LLQQERY+ELG+LLKPFGP K SPRETAIWLTKS KE  +
Sbjct:  507 SDSSGRNATA-ASSRGSNDSRQQRFDTSSFQQRAEALEGLLEFSAQLLQQERYEELGILLKPFGPEKASPRETAIWLTKSFKETAS 591          
BLAST of CN184542 vs. ExPASy Swiss-Prot
Match: NEK1_ORYSJ (Serine/threonine-protein kinase Nek1 OS=Oryza sativa subsp. japonica GN=NEK1 PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.840e-29
Identity = 68/85 (80.00%), Postives = 72/85 (84.71%), Query Frame = -1
Query:  369 SNSSDQNATAGASSR--NSSDARRHRFDTSSYQQRAEALEGLLEFSAKLLQQERYDELGVLLKPFGPGKVSPRETAIWLTKSIKE 617
            S+S   NA A ASSR  +S   R+ RFDTSSYQQRAEALEGLLEFSA+LLQQERYDELGVLLKPFGP KVSPRETAIWLTKS KE
Sbjct:  512 SSSGRNNAAAAASSRAGSSESTRQRRFDTSSYQQRAEALEGLLEFSAQLLQQERYDELGVLLKPFGPEKVSPRETAIWLTKSFKE 596          
BLAST of CN184542 vs. ExPASy Swiss-Prot
Match: NEK4_ARATH (Serine/threonine-protein kinase Nek4 OS=Arabidopsis thaliana GN=NEK4 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.234e-25
Identity = 60/83 (72.29%), Postives = 65/83 (78.31%), Query Frame = -1
Query:  369 SNSSDQNATAGASSRNSSDARRHRFDTSSYQQRAEALEGLLEFSAKLLQQERYDELGVLLKPFGPGKVSPRETAIWLTKSIKE 617
            SN S          R+ S+ ++ RFDTSSYQQRAEALEGLLEFSAKLLQQERYDELGVLLKPFG  +VS RETAIWLTKS KE
Sbjct:  470 SNGSITKDKCTVQKRSVSEVKQRRFDTSSYQQRAEALEGLLEFSAKLLQQERYDELGVLLKPFGAERVSSRETAIWLTKSFKE 552          
BLAST of CN184542 vs. ExPASy Swiss-Prot
Match: NEK3_ORYSJ (Serine/threonine-protein kinase Nek3 OS=Oryza sativa subsp. japonica GN=NEK3 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.970e-23
Identity = 53/68 (77.94%), Postives = 63/68 (92.65%), Query Frame = -1
Query:  372 NSSD-ARRHRFDTSSYQQRAEALEGLLEFSAKLLQQERYDELGVLLKPFGPGKVSPRETAIWLTKSIK 572
            +SSD  ++ RFDT+SY+QRAEALEGLLEFSA+LLQQER++ELG+LLKPFGPGK SPRETAIWL+KS K
Sbjct:  514 SSSDWMKQRRFDTTSYRQRAEALEGLLEFSAQLLQQERFEELGILLKPFGPGKASPRETAIWLSKSFK 581          
BLAST of CN184542 vs. ExPASy Swiss-Prot
Match: NEK5_ORYSJ (Serine/threonine-protein kinase Nek5 OS=Oryza sativa subsp. japonica GN=NEK5 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.512e-15
Identity = 41/57 (71.93%), Postives = 45/57 (78.95%), Query Frame = -1
Query:  372 DTSSYQQRAEALEGLLEFSAKLLQQERYDELGVLLKPFGPGKVSPRETAIWLTKSIK 542
            D  S++QRAEALEGLLE SA LLQ  R +EL V+LKPFG  KVSPRETAIWL KS K
Sbjct:  875 DVKSFRQRAEALEGLLELSADLLQHNRLEELAVVLKPFGKDKVSPRETAIWLAKSFK 931          
BLAST of CN184542 vs. ExPASy Swiss-Prot
Match: NEK5_ARATH (Serine/threonine-protein kinase Nek5 OS=Arabidopsis thaliana GN=NEK5 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.512e-15
Identity = 39/61 (63.93%), Postives = 48/61 (78.69%), Query Frame = -1
Query:  372 RHRFDTSSYQQRAEALEGLLEFSAKLLQQERYDELGVLLKPFGPGKVSPRETAIWLTKSIK 554
            +   D  S++QRAEALEGLLE SA LL+Q R +EL ++L+PFG  KVSPRETAIWL KS+K
Sbjct:  876 KETLDIKSFRQRAEALEGLLELSADLLEQSRLEELAIVLQPFGKNKVSPRETAIWLAKSLK 936          
The following BLAST results are available for this feature:
BLAST of CN184542 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
NEK2_ARATH2.100e-3384.71Serine/threonine-protein kinase Nek2 OS=Arabidopsi... [more]
NEK1_ARATH7.469e-3178.41Serine/threonine-protein kinase Nek1 OS=Arabidopsi... [more]
NEK3_ARATH1.664e-3081.40Serine/threonine-protein kinase Nek3 OS=Arabidopsi... [more]
NEK2_ORYSJ2.838e-3077.91Serine/threonine-protein kinase Nek2 OS=Oryza sati... [more]
NEK2_ORYSI2.838e-3077.91Serine/threonine-protein kinase Nek2 OS=Oryza sati... [more]
NEK1_ORYSJ1.840e-2980.00Serine/threonine-protein kinase Nek1 OS=Oryza sati... [more]
NEK4_ARATH1.234e-2572.29Serine/threonine-protein kinase Nek4 OS=Arabidopsi... [more]
NEK3_ORYSJ1.970e-2377.94Serine/threonine-protein kinase Nek3 OS=Oryza sati... [more]
NEK5_ORYSJ1.512e-1571.93Serine/threonine-protein kinase Nek5 OS=Oryza sati... [more]
NEK5_ARATH1.512e-1563.93Serine/threonine-protein kinase Nek5 OS=Arabidopsi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0005K21_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005K21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184542 ID=CN184542; Name=CN184542; organism=Citrus sinensis; type=EST; length=617bp
ATGAAGTGTTCATACAGATTGAACTTACAAGATTACAATACATAACTACA
ATTTGTCCATTGTTTGTGCAATAACTATCTGCCAAGATACAAATGTGGTC
CTCAACTTTAGAAGCTAAGAATTTGTATCGATAACCTATCATACAACACC
ATCCAGGTTAAACCAAAATCAACAAATCACAGACATGGGAAATATGGAAT
TAAAATCCACTACAACCTACAAATTAGTGTTTGCGTAAGTGCCTAGTTCC
TCAATCACTGACCCAAAATAGAAAAAAATACTCAGCTCTAAAGATTGTCG
AAGCTGCAGATATGGTACACACATGTGCTGGTAGTTCATGGGTGTTGATC
ATCTTGCTTGGCAGTGTTTTCCTTGATGCTCTTGGTTAACCAGATTGCTG
TCTCCCTGGGTGAAACTTTCCCGGGTCCGAATGGCTTTAGTAGCACCCCA
AGCTCATCATACCTTTCCTGTTGCAGCAATTTTGCACTAAATTCGAGCAA
GCCTTCCAAAGCTTCGGCACGTTGCTGGTATGATGAAGTGTCAAACCGAT
GGCGGCGTGCGTCTGATGAGTTGCGGCTGGATGCCCCTGCCGTTGCATTT
TGATCTGATGAGTTGCT
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