CN184539

Overview
NameCN184539
Unique NameCN184539
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length646
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2430 contig Csv1_Contig2430:1..646. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN184539 vs. ExPASy Swiss-Prot
Match: BT1_MAIZE (Protein brittle-1, chloroplastic/amyloplastic OS=Zea mays GN=BT1 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.418e-14
Identity = 41/85 (48.24%), Postives = 62/85 (72.94%), Query Frame = -1 
Query:  356 LALGALAGFTASTISFPLEVARKRLMVGALQGK-CPPHMAAALAEVIREEGLMGLYRGWGASCLKVMPSSGITWMFYEAWKDILL 607
            L +G+ AG  AS+ +FPLEVARK++ VGA+ G+    ++  A+  ++++EG  GLYRG G SC+K+MP++GI +M YEA K IL+
Sbjct:  330 LLIGSAAGAIASSATFPLEVARKQMQVGAVGGRQVYQNVLHAIYCILKKEGAGGLYRGLGPSCIKLMPAAGIAFMCYEACKKILV 414
The following BLAST results are available for this feature:
BLAST of CN184539 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
BT1_MAIZE1.418e-1448.24Protein brittle-1, chloroplastic/amyloplastic OS=Z... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0005K19_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005K19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184539 ID=CN184539; Name=CN184539; organism=Citrus sinensis; type=EST; length=646bp
TTTTAGAAAAGCTGTAAAAAAATTAAATAAAAGGACCAAAAGGCCAAACA
GAAAAAAGGATGCATGTATTTGAATAACAATGTGTTATGTAAATGAACGA
AGAAACCTATTGACACAAGTCAAATCATTTATGGGATGCCAAAATTGGTA
GCTTGCCAAATATTTTGGTTAGGCAAGGCAACGGGCGATAAGAAATACGC
AGCCCTCACCAATACTCACTTATAAAATCTGCTTCATCTTTAATCAAGAT
CACATTGTTCTTAGTGTACAAAGCCTGGCCTTTACCAGCACCTTCCACCT
CATGATTCAGGAAAATACCCTAATCTATGTCTCAAATAGGACCAGGTTTT
AGGGGGAGCAGTATGTCTTTCCAAGCTTCGTAAAACATCCAGGTTATTCC
TGAGGAAGGCATGACCTTTAAACAGCTTGCACCCCATCCTCGGTAAAGGC
CCATCAAACCCTCCTCCCGAATGACTTCAGCAAGTGCAGCTGCCATGTGG
GGTGGACATTTACCCTGCAAAGCTCCTACCATAAGCCGCTTCCTAGCAAC
CTCCAAGGGAAAGCTGATGGTGCTAGCTGTAAAACCTGCAAGAGCTCCCA
ATGCAAGCATCTCCGGACGGTTTAGCGACCTCTTATTCTTTGAATT
back to top