CN184537

Overview
NameCN184537
Unique NameCN184537
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length373
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2058 contig Csv1_Contig2058:472..845. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184537 vs. ExPASy Swiss-Prot
Match: APH1_ARATH (Gamma-secretase subunit APH1-like OS=Arabidopsis thaliana GN=At2g31440 PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 1.757e-12
Identity = 39/85 (45.88%), Postives = 45/85 (52.94%), Query Frame = 1
Query:  118 MTVXXXXXXXXXXXXPSLSLFVAVISKKPFXXXXXXXXXXXXXXXXXXXXXXXRAFLPLKSTTWWPFALLIISSVGFQEGLRVLF 372
            MTV            PSLSLFV+VIS+KPF                       R FLPLK+  WWP+ALL+I+SV FQEGLR LF
Sbjct:    1 MTVAAGIGYALVALGPSLSLFVSVISRKPFLILTVLSSTLLWLVSLIILSGLWRPFLPLKANVWWPYALLVITSVCFQEGLRFLF 85          
The following BLAST results are available for this feature:
BLAST of CN184537 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
APH1_ARATH1.757e-1245.88Gamma-secretase subunit APH1-like OS=Arabidopsis t... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0005K17_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005K17, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184537 ID=CN184537; Name=CN184537; organism=Citrus sinensis; type=EST; length=373bp
GGTAAATTCTGCAGAAAGGGCTTGAAATTGCCAAAATTTTCAAAAGCCCC
AGAGAGCTGAGGGGGTTGCTTGGGTACCGGGGAAAAGAAAAAGGAAAGGC
GGAAAGAAAATTGAGAAATGACAGTAGCGGCAGGGATCGGGTACGCGTTG
ATAGCGCTGGGGCCGTCTCTTTCTCTATTCGTCGCCGTCATCTCCAAAAA
GCCTTTCTTGATCCTCACTGTCCTTTCTAGTACATTGTTATGGCTTATAA
GTCTGATTGTGCTGTCGGGGATATGGAGGGCTTTTCTTCCTCTAAAATCA
ACCACCTGGTGGCCATTTGCACTACTTATAATTTCATCTGTCGGATTCCA
AGAAGGGCTTCGTGTTCTTTTCT
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