CN184533

Overview
NameCN184533
Unique NameCN184533
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length636
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184533 vs. ExPASy Swiss-Prot
Match: SCO1_BOVIN (Protein SCO1 homolog, mitochondrial OS=Bos taurus GN=SCO1 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 4.906e-19
Identity = 31/64 (48.44%), Postives = 44/64 (68.75%), Query Frame = 2
Query:  446 GHLNFINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGI-DIVPAFI 634
            G  +   H G+  T+KD+LG+W +IYFGFTHCPDICP+EL+K+   VD+I     + ++ P FI
Sbjct:  142 GPFSLTTHTGEPKTDKDYLGQWVLIYFGFTHCPDICPEELEKMIQVVDEIDSIPTLPNLTPLFI 205          

HSP 2 Score: 40.817 bits (94), Expect = 4.906e-19
Identity = 23/77 (29.87%), Postives = 38/77 (49.35%), Query Frame = 1
Query:  238 SGDSNQSKSDTGKPIRGGPISWLSFLLLALTGAGII---WYYDKEKKQHIEEINSASQAVKQGPSVGKAAIGGPFKL 459
            SG   +   D  +P + GP+SW S  +    G  ++    Y+ KEK + +E+        ++  S+GK  +GGPF L
Sbjct:   78 SGPEWKGSGDPMRPSKPGPVSWKSLAVTFAIGGALLAGMKYFKKEKTEKLEK--------ERHRSIGKPLLGGPFSL 146          
BLAST of CN184533 vs. ExPASy Swiss-Prot
Match: SCO1_MOUSE (Protein SCO1 homolog, mitochondrial OS=Mus musculus GN=Sco1 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 4.018e-18
Identity = 30/64 (46.88%), Postives = 45/64 (70.31%), Query Frame = 2
Query:  446 GHLNFINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGI-DIVPAFI 634
            G  +   H+G+  T+KD+LG+W +IYFGFTHCPDICP+EL+K+   V++I     + ++ P FI
Sbjct:  121 GPFSLTTHNGEPKTDKDYLGQWVLIYFGFTHCPDICPEELEKMIEVVEEIDSIPSLPNLTPLFI 184          

HSP 2 Score: 37.7354 bits (86), Expect = 4.018e-18
Identity = 26/85 (30.59%), Postives = 38/85 (44.71%), Query Frame = 1
Query:  214 PNSEGGDKSGDSNQSKSDTGKPIRGGPISWLSFLLLALTGAGII---WYYDKEKKQHIEEINSASQAVKQGPSVGKAAIGGPFKL 459
            P   G        Q+ S   KP   GP+SW S  L    G  ++    Y+ KEK + +E+        ++  S+GK  +GGPF L
Sbjct:   52 PPPPGAGPEPKGGQAGSHRPKP---GPVSWKSLALTFAIGGSLLAGMKYFKKEKIEKLEK--------QRHRSIGKPLLGGPFSL 125          
BLAST of CN184533 vs. ExPASy Swiss-Prot
Match: SCO1_SCHPO (Protein sco1 OS=Schizosaccharomyces pombe GN=sco1 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.153e-13
Identity = 33/63 (52.38%), Postives = 44/63 (69.84%), Query Frame = 2
Query:  446 GHLNFINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFI 634
            G  + I+H G  VT+ DF GK+++IYFGFT CPDICPDEL K++AA+D +    G  + P FI
Sbjct:   99 GAFSLIDHHGNRVTDNDFKGKFSLIYFGFTRCPDICPDELDKMSAAIDIVNNVVGDVVYPIFI 161          
BLAST of CN184533 vs. ExPASy Swiss-Prot
Match: SCO1_HUMAN (Protein SCO1 homolog, mitochondrial OS=Homo sapiens GN=SCO1 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.967e-13
Identity = 35/81 (43.21%), Postives = 52/81 (64.20%), Query Frame = 2
Query:  401 KQLNKDHQWE--KQPSAGHLNFINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGI-DIVPAFI 634
            ++L K+ Q    K    G  +   H G+  T+KD+LG+W +IYFGFTHCPD+CP+EL+K+   VD+I   + + D+ P FI
Sbjct:  121 EKLEKERQRHIGKPLLGGPFSLTTHTGERKTDKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFI 201          
BLAST of CN184533 vs. ExPASy Swiss-Prot
Match: SCO2_DANRE (Protein SCO2 homolog, mitochondrial OS=Danio rerio GN=sco2 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 9.764e-13
Identity = 32/64 (50.00%), Postives = 45/64 (70.31%), Query Frame = 2
Query:  446 GHLNFINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKI-KENSGIDIVPAFI 634
            G  + ++H G+  T++DFLG W ++YFGFTHCPDICPDEL+KL + V  + K+ S   + P FI
Sbjct:  114 GDFHLLDHTGQRRTKRDFLGHWVLLYFGFTHCPDICPDELEKLTSVVHILDKDPSLPSVQPLFI 177          
BLAST of CN184533 vs. ExPASy Swiss-Prot
Match: SCO2_MOUSE (Protein SCO2 homolog, mitochondrial OS=Mus musculus GN=Sco2 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.266e-12
Identity = 30/64 (46.88%), Postives = 43/64 (67.19%), Query Frame = 2
Query:  446 GHLNFINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIV-PAFI 634
            G  + ++H G+   + DF G+W ++YFGFTHCPDICPDEL+KL   V K++    + +V P FI
Sbjct:   91 GDFSLLDHKGQPRCKADFRGQWVLMYFGFTHCPDICPDELEKLVQVVRKLEAEPDLPLVQPVFI 154          
BLAST of CN184533 vs. ExPASy Swiss-Prot
Match: SCO2_HUMAN (Protein SCO2 homolog, mitochondrial OS=Homo sapiens GN=SCO2 PE=1 SV=3)

HSP 1 Score: 69.707 bits (169), Expect = 1.410e-11
Identity = 29/64 (45.31%), Postives = 43/64 (67.19%), Query Frame = 2
Query:  446 GHLNFINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGI-DIVPAFI 634
            G  + ++H G+   + DF G+W ++YFGFTHCPDICPDEL+KL   V +++   G+  + P FI
Sbjct:  102 GDFHLLDHRGRARCKADFRGQWVLMYFGFTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPVFI 165          
BLAST of CN184533 vs. ExPASy Swiss-Prot
Match: SCO2_BOVIN (Protein SCO2 homolog, mitochondrial OS=Bos taurus GN=SCO2 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.841e-11
Identity = 29/64 (45.31%), Postives = 43/64 (67.19%), Query Frame = 2
Query:  446 GHLNFINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGI-DIVPAFI 634
            G  + ++H G+   + DF G+W ++YFGFTHCPDICPDEL+KL   V +++   G+  + P FI
Sbjct:  102 GDFSLLDHRGRVRCKADFRGQWVLLYFGFTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPLFI 165          
BLAST of CN184533 vs. ExPASy Swiss-Prot
Match: SCO1_YEAST (Protein SCO1, mitochondrial OS=Saccharomyces cerevisiae GN=SCO1 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.141e-11
Identity = 33/85 (38.82%), Postives = 49/85 (57.65%), Query Frame = 2
Query:  380 KR*IVLLKQLNKDHQWEKQPSAGHLNFINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFI 634
            KR +   K+   +  + K    G  +  +  G   TEK+ LGK+++IYFGF++CPDICPDEL KL   ++ +    GI + P FI
Sbjct:   95 KRRLETQKEAEANRGYGKPSLGGPFHLEDMYGNEFTEKNLLGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPLFI 179          
BLAST of CN184533 vs. ExPASy Swiss-Prot
Match: SCO2_YEAST (Protein SCO2, mitochondrial OS=Saccharomyces cerevisiae GN=SCO2 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.102e-11
Identity = 33/97 (34.02%), Postives = 55/97 (56.70%), Query Frame = 2
Query:  344 YGTMTRKRSNILKR*IVLLKQLNKDHQWEKQPSAGHLNFINHDGKNVTEKDFLGKWTVIYFGFTHCPDICPDELQKLAAAVDKIKENSGIDIVPAFI 634
            Y  ++RKR     R +   K+ + +  +      G  N  + +GK  TE++  GK++++YFGF+HCPDICP+EL +L   + ++ +   I I P FI
Sbjct:   94 YAYLSRKR-----RLLETEKEADANRAYGSVALGGPFNLTDFNGKPFTEENLKGKFSILYFGFSHCPDICPEELDRLTYWISELDDKDHIKIQPLFI 185          
The following BLAST results are available for this feature:
BLAST of CN184533 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
SCO1_BOVIN4.906e-1948.44Protein SCO1 homolog, mitochondrial OS=Bos taurus ... [more]
SCO1_MOUSE4.018e-1846.88Protein SCO1 homolog, mitochondrial OS=Mus musculu... [more]
SCO1_SCHPO1.153e-1352.38Protein sco1 OS=Schizosaccharomyces pombe GN=sco1 ... [more]
SCO1_HUMAN1.967e-1343.21Protein SCO1 homolog, mitochondrial OS=Homo sapien... [more]
SCO2_DANRE9.764e-1350.00Protein SCO2 homolog, mitochondrial OS=Danio rerio... [more]
SCO2_MOUSE8.266e-1246.88Protein SCO2 homolog, mitochondrial OS=Mus musculu... [more]
SCO2_HUMAN1.410e-1145.31Protein SCO2 homolog, mitochondrial OS=Homo sapien... [more]
SCO2_BOVIN1.841e-1145.31Protein SCO2 homolog, mitochondrial OS=Bos taurus ... [more]
SCO1_YEAST3.141e-1138.82Protein SCO1, mitochondrial OS=Saccharomyces cerev... [more]
SCO2_YEAST4.102e-1134.02Protein SCO2, mitochondrial OS=Saccharomyces cerev... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0005K15_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005K15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184533 ID=CN184533; Name=CN184533; organism=Citrus sinensis; type=EST; length=636bp
AACCTCCATCAACGTTTTTATTTCCACACTCTTCTTACCAAATGCCGCCC
GCCAATTCCGTCACCAACAATCGCCGATAATATTCAGCATCGAGCTCTCC
CTTTAATCCAACAGGCTATACCTTTTGGTATTGGATTCCAATCTTTCGTG
GCTGATCAAAGATTTTCAAGCACCAGTACAACAACTGGCACCGTTCAATC
AGGTCATTCAAAACCTAATTCTGAAGGAGGCGACAAGTCTGGAGACTCGA
ATCAGAGCAAAAGCGATACTGGGAAACCAATTCGCGGCGGGCCTATATCG
TGGTTGAGTTTTCTGTTGCTGGCTCTAACGGGAGCTGGAATAATATGGTA
CTATGACAAGGAAAAGAAGCAACATATTGAAGAGATAAATAGTGCTTCTC
AAGCAGTTAAACAAGGACCATCAGTGGGAAAAGCAGCCATCGGCGGGCCA
TTTAAACTTTATAAACCATGATGGGAAGAATGTAACTGAGAAAGACTTTC
TAGGGAAGTGGACGGTTATATACTTTGGCTTCACCCATTGCCCCGATATC
TGCCCTGATGAGTTACAAAAACTAGCTGCTGCAGTTGATAAAATAAAGGA
AAACTCAGGGATTGACATTGTGCCTGCTTTTATCTC
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