CN184525

Overview
NameCN184525
Unique NameCN184525
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length511
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN184525_ssr177 microsatellite CN184525_ssr177:177..188. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2668 contig Csv1_Contig2668:296..806. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184525 vs. ExPASy Swiss-Prot
Match: LTP1_MORNI (Non-specific lipid-transfer protein 1 OS=Morus nigra PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 9.994e-32
Identity = 63/90 (70.00%), Postives = 73/90 (81.11%), Query Frame = -2
Query:  241 CGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 510
            CGQV+ SLAPCI +LR GG   P  CCNGVRSLN AA+TT DRQAACNCLK A+ SI G+N N+AAGLP +CGVS+PYKISP+TDC  V+
Sbjct:    3 CGQVSSSLAPCINYLRAGG-VVPANCCNGVRSLNNAAKTTADRQAACNCLKSAFNSIKGLNLNLAAGLPGKCGVSVPYKISPSTDCKSVK 91          
BLAST of CN184525 vs. ExPASy Swiss-Prot
Match: NLTP_HELAN (Non-specific lipid-transfer protein OS=Helianthus annuus PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 2.226e-31
Identity = 62/90 (68.89%), Postives = 73/90 (81.11%), Query Frame = -2
Query:  241 CGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 510
            CGQV+ SLAPCI++L  GG  PP  CC+GV+SLN AA+TTPDRQAAC CLK AY SI G+NA  AA  P +CGVSIPYKISP+TDCS+V+
Sbjct:   28 CGQVSSSLAPCISYLTKGGAVPPA-CCSGVKSLNSAAKTTPDRQAACGCLKSAYNSISGVNAGNAASFPGKCGVSIPYKISPSTDCSKVQ 116          
BLAST of CN184525 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUDU (Non-specific lipid-transfer protein 1 OS=Prunus dulcis PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 5.484e-30
Identity = 57/90 (63.33%), Postives = 73/90 (81.11%), Query Frame = -2
Query:  241 CGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 510
            CGQV+ +LAPCI ++R GG  PP  CCNG+R++N  ARTTPDRQAACNCLKQ   S+PG+N N AA LP +CGV+IPY+ISP+T+C+ V+
Sbjct:   29 CGQVSSNLAPCIPYVRGGGAVPPA-CCNGIRNVNNLARTTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGVNIPYQISPSTNCANVK 117          
BLAST of CN184525 vs. ExPASy Swiss-Prot
Match: NLTP_PRUAV (Non-specific lipid-transfer protein OS=Prunus avium PE=1 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 9.354e-30
Identity = 56/90 (62.22%), Postives = 73/90 (81.11%), Query Frame = -2
Query:  241 CGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 510
            CGQV+ +LAPCIA++R GG  PP  CCNG+R++N  A+TT DRQ ACNCLKQ   S+PG+NAN AA LP +CGV++PYKISP+T+C+ V+
Sbjct:   29 CGQVSSNLAPCIAYVRGGGAVPPA-CCNGIRNINNLAKTTADRQTACNCLKQLSASVPGVNANNAAALPGKCGVNVPYKISPSTNCATVK 117          
BLAST of CN184525 vs. ExPASy Swiss-Prot
Match: NLTP_MALDO (Non-specific lipid-transfer protein OS=Malus domestica GN=MALD3 PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 3.555e-29
Identity = 57/90 (63.33%), Postives = 71/90 (78.89%), Query Frame = -2
Query:  241 CGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 510
            CGQVT SLAPCI ++R+GG  PP  CCNG+R++NG ARTT DRQ ACNCLK    SI G+N N AAGLP +CGV++PYKIS +T+C+ V+
Sbjct:   27 CGQVTSSLAPCIGYVRSGGAVPPA-CCNGIRTINGLARTTADRQTACNCLKNLAGSISGVNPNNAAGLPGKCGVNVPYKISTSTNCATVK 115          
BLAST of CN184525 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUPE (Non-specific lipid-transfer protein 1 OS=Prunus persica PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 3.555e-29
Identity = 57/90 (63.33%), Postives = 71/90 (78.89%), Query Frame = -2
Query:  241 CGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 510
            CGQV+ +LAPCI ++R GG  PP  CCNG+R++N  ARTTPDRQAACNCLKQ   S+PG+N N AA LP +CGV IPYKIS +T+C+ V+
Sbjct:    3 CGQVSSALAPCIPYVRGGGAVPPA-CCNGIRNVNNLARTTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGVHIPYKISASTNCATVK 91          
BLAST of CN184525 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUAR (Non-specific lipid-transfer protein 1 OS=Prunus armeniaca PE=1 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 5.133e-28
Identity = 56/90 (62.22%), Postives = 70/90 (77.78%), Query Frame = -2
Query:  241 CGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 510
            CGQV+ SLAPCI ++R GG  PP  CCNG+R++N  ARTTPDR+ ACNCLKQ   SI G+N N AA LP +CGV+IPYKIS +T+C+ V+
Sbjct:    3 CGQVSSSLAPCIGYVRGGGAVPPA-CCNGIRNVNNLARTTPDRRTACNCLKQLSGSISGVNPNNAAALPGKCGVNIPYKISASTNCATVK 91          
BLAST of CN184525 vs. ExPASy Swiss-Prot
Match: NLTP_DAUCA (Non-specific lipid-transfer protein OS=Daucus carota GN=EP2 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.143e-27
Identity = 56/90 (62.22%), Postives = 68/90 (75.56%), Query Frame = -2
Query:  244 CGQVTGSLAPCIAFLRTGGRFPPP-PCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 510
            CGQVTG+LAPC+ +LR+    P P  CCN VR LN AARTT D++ AC CLKQ   ++ G+N N AAGLP +CGV+IPYKISP TDC+RV
Sbjct:   30 CGQVTGALAPCLGYLRSQVNVPVPLTCCNVVRGLNNAARTTLDKRTACGCLKQTANAVTGLNLNAAAGLPARCGVNIPYKISPTTDCNRV 119          
BLAST of CN184525 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUDO (Non-specific lipid-transfer protein 1 OS=Prunus domestica PE=1 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.951e-27
Identity = 54/90 (60.00%), Postives = 71/90 (78.89%), Query Frame = -2
Query:  241 CGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRVR 510
            CGQV+ +LAPCI +++ GG  PP  CCNG+R++N  ARTT DR+AACNCLKQ   SIPG+N N AA LP +CGV++PYKIS +T+C+ V+
Sbjct:    3 CGQVSSNLAPCINYVKGGGAVPPA-CCNGIRNVNNLARTTADRRAACNCLKQLSGSIPGVNPNNAAALPGKCGVNVPYKISASTNCATVK 91          
BLAST of CN184525 vs. ExPASy Swiss-Prot
Match: NLTP_MAIZE (Non-specific lipid-transfer protein OS=Zea mays PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 7.412e-27
Identity = 55/89 (61.80%), Postives = 66/89 (74.16%), Query Frame = -2
Query:  244 CGQVTGSLAPCIAFLRTGGRFPPPPCCNGVRSLNGAARTTPDRQAACNCLKQAYRSIPGINANVAAGLPRQCGVSIPYKISPNTDCSRV 510
            CGQV  ++APCI++ R  G  P   CC+GVRSLN AARTT DR+AACNCLK A   + G+NA  AA +P +CGVSIPY IS +TDCSRV
Sbjct:   31 CGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGVSIPYTISTSTDCSRV 119          
The following BLAST results are available for this feature:
BLAST of CN184525 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
LTP1_MORNI9.994e-3270.00Non-specific lipid-transfer protein 1 OS=Morus nig... [more]
NLTP_HELAN2.226e-3168.89Non-specific lipid-transfer protein OS=Helianthus ... [more]
NLTP1_PRUDU5.484e-3063.33Non-specific lipid-transfer protein 1 OS=Prunus du... [more]
NLTP_PRUAV9.354e-3062.22Non-specific lipid-transfer protein OS=Prunus aviu... [more]
NLTP_MALDO3.555e-2963.33Non-specific lipid-transfer protein OS=Malus domes... [more]
NLTP1_PRUPE3.555e-2963.33Non-specific lipid-transfer protein 1 OS=Prunus pe... [more]
NLTP1_PRUAR5.133e-2862.22Non-specific lipid-transfer protein 1 OS=Prunus ar... [more]
NLTP_DAUCA1.143e-2762.22Non-specific lipid-transfer protein OS=Daucus caro... [more]
NLTP1_PRUDO1.951e-2760.00Non-specific lipid-transfer protein 1 OS=Prunus do... [more]
NLTP_MAIZE7.412e-2761.80Non-specific lipid-transfer protein OS=Zea mays PE... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0005K11_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005K11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184525 ID=CN184525; Name=CN184525; organism=Citrus sinensis; type=EST; length=511bp
GAGGTAAGGGAGAATTTTTAAGATAATACCACAAAATAACTAGAATTAAT
CACTCAAAACACAGATCACGTTTACATATTTAATATGATATTAAAAGCAA
AGATACAAACATGACATGAGAGTGAGACTCACACAAGTGGAGACTCGTTC
GGACAAAGAAATTAACATATATATTCTTTATTTATTTATTCTTCTCAGTC
AATCATACTTGGAAAGTCACAGAGCTCAAACTCAACTTCACCTGACCCTA
GAGCAGTCAGTGTTGGGGCTGATCTTGTAAGGAATGCTGACTCCACATTG
ACGAGGAAGGCCAGCGGCAACATTAGCGTTGATGCCGGGGATTGATCGGT
AAGCTTGCTTCAAGCAGTTGCATGCAGCTTGGCGGTCAGGGGTGGTTCTG
GCGGCGCCGTTGAGAGACCTGACGCCGTTACAGCATGGGGGTGGAGGAAA
ACGCCCTCCAGTTCTCAAGAAAGCGATGCATGGAGCCAAGGAGCCTGTCA
CCTGCCCACAT
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