CN184521

Overview
NameCN184521
Unique NameCN184521
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length529
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184521 vs. ExPASy Swiss-Prot
Match: SOX_ARATH (Probable sarcosine oxidase OS=Arabidopsis thaliana GN=At2g24580 PE=2 SV=1)

HSP 1 Score: 266.544 bits (680), Expect = 5.305e-71
Identity = 123/178 (69.10%), Postives = 146/178 (82.02%), Query Frame = 3
Query:    3 PIQAVETSVCYWRIKEG-EADYAVGGDFPSFASYGDPHVYGTPSLEYPGLIKIALHRGYLCDPDRRPWGPGPLLDSLKELIQGRFAGRVDSSGPAATQLCMYSMTPDKDFVIDFLGGELGEDVVVAGGFSGHGFKMAPVVGRILADLVLSGEA--QGVELRHFRIARFKENPKGNVKD 527
            P++ +ET+VCYWRIKEG E  + + G+FP+FASYG P+VYGTPSLEYPGLIK+A+H GY CDPD+RPWGPG  L+ LKE I+ RF G VDS GP ATQLCMYSMTPD+DFVIDFLGGE G DVVV GGFSGHGFKMAP VGRILAD+ +  EA   GVE++ F + RF++NPKGN K+
Sbjct:  226 PVEPLETTVCYWRIKEGHEEKFTIDGEFPTFASYGAPYVYGTPSLEYPGLIKVAVHGGYWCDPDKRPWGPGVKLEELKEWIKERFGGMVDSEGPVATQLCMYSMTPDEDFVIDFLGGEFGRDVVVGGGFSGHGFKMAPAVGRILADMAMEVEAGGGGVEMKQFSLRRFEDNPKGNAKE 403          
BLAST of CN184521 vs. ExPASy Swiss-Prot
Match: SOX_BOVIN (Peroxisomal sarcosine oxidase OS=Bos taurus GN=PIPOX PE=2 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 2.044e-22
Identity = 66/180 (36.67%), Postives = 94/180 (52.22%), Query Frame = 3
Query:    3 PIQAVETSVCYWRIKEGEADYAVGGDFPSFASYG----DPHVYGTPSLEYPGLIKIALHRGYLCDPDRRPWGPGPLLDSLK-ELIQGRFAGRVD--SSGPAATQLCMYSMTPDKDFVIDFLGGELGEDVVVAGGFSGHGFKMAPVVGRILADLVLSGEAQGVELRHFRIARFKENPKGNV 521
            P+Q +  +VCYW+ K     Y+V   FP F   G      H+YG PS EYPGL+K+  H G   DP+ R   P    D     ++ G     +      PA  + CMY+ TPD  FV+D       +++V+  GFSGHGFK++PVVG+IL +L +       +L  FRI+RF    K ++
Sbjct:  218 PLQTLRINVCYWQEKV-PGSYSVSQAFPCFMGLGLSLAPHHIYGLPSREYPGLMKVCYHHGNNADPEERDC-PAAFSDIQDVHILSGFVRDHLPDLQPEPAVMEHCMYTNTPDGHFVLD--RHPKYDNIVIGAGFSGHGFKLSPVVGKILYELSMK-LTPSYDLTPFRISRFPSLGKAHL 392          
BLAST of CN184521 vs. ExPASy Swiss-Prot
Match: SOX_RABIT (Peroxisomal sarcosine oxidase OS=Oryctolagus cuniculus GN=PIPOX PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 3.487e-22
Identity = 65/179 (36.31%), Postives = 95/179 (53.07%), Query Frame = 3
Query:    3 PIQAVETSVCYWRIKEGEADYAVGGDFPSFASYG--DPHVYGTPSLEYPGLIKIALHRGYLCDPDRR--PWGPGPLLDS--LKELIQGRFAGRVDSSGPAATQLCMYSMTPDKDFVIDFLGGELGEDVVVAGGFSGHGFKMAPVVGRILADLVLSGEAQGVELRHFRIARFKENPKGNV 521
            P+Q +  +VCYWR +     Y V   FP F   G    H+YG P+ EYPGL+K++ H G   DP+ R  P     + D   L   ++           PA  + CMY+ TPD+ F++D       +++V+  GFSGHGFK+APVVG+IL +L +       +L  FRI+RF    K ++
Sbjct:  218 PLQTLRINVCYWR-EMVPGSYGVSQAFPCFLWLGLCPHHIYGLPTGEYPGLMKVSYHHGNHADPEERDCPTARTDIGDVQILSSFVRDHLPDLKPE--PAVIESCMYTNTPDEQFILD--RHPKYDNIVIGAGFSGHGFKLAPVVGKILYELSMK-LTPSYDLAPFRISRFPSLGKAHL 390          
BLAST of CN184521 vs. ExPASy Swiss-Prot
Match: SOX_HUMAN (Peroxisomal sarcosine oxidase OS=Homo sapiens GN=PIPOX PE=2 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 3.487e-22
Identity = 65/179 (36.31%), Postives = 95/179 (53.07%), Query Frame = 3
Query:    3 PIQAVETSVCYWRIKEGEADYAVGGDFPSFASYG--DPHVYGTPSLEYPGLIKIALHRGYLCDPDRR--PWGPGPLLDS--LKELIQGRFAGRVDSSGPAATQLCMYSMTPDKDFVIDFLGGELGEDVVVAGGFSGHGFKMAPVVGRILADLVLSGEAQGVELRHFRIARFKENPKGNV 521
            P+Q +  +VCYWR +     Y V   FP F   G    H+YG P+ EYPGL+K++ H G   DP+ R  P     + D   L   ++           PA  + CMY+ TPD+ F++D       +++V+  GFSGHGFK+APVVG+IL +L +       +L  FRI+RF    K ++
Sbjct:  218 PLQTLRINVCYWR-EMVPGSYGVSQAFPCFLWLGLCPHHIYGLPTGEYPGLMKVSYHHGNHADPEERDCPTARTDIGDVQILSSFVRDHLPDLKPE--PAVIESCMYTNTPDEQFILD--RHPKYDNIVIGAGFSGHGFKLAPVVGKILYELSMK-LTPSYDLAPFRISRFPSLGKAHL 390          
BLAST of CN184521 vs. ExPASy Swiss-Prot
Match: SOX_MOUSE (Peroxisomal sarcosine oxidase OS=Mus musculus GN=Pipox PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 8.588e-21
Identity = 64/180 (35.56%), Postives = 92/180 (51.11%), Query Frame = 3
Query:    3 PIQAVETSVCYWRIKEGEADYAVGGDFPSFASY--GDPHVYGTPSLEYPGLIKIALHRGYLCDPDRRPWGPGPLLDS-----LKELIQGRFAGRVDSSGPAATQLCMYSMTPDKDFVIDFLGGELGEDVVVAGGFSGHGFKMAPVVGRILADLVLSGEAQGVELRHFRIARFKENPKGNV 521
            P+Q +  +VCYWR K     Y V   FP          H+YG P+ EYPGL+KI  H G   DP+ R   P    D      L   ++    G    + P   + CMY+ TPD+ F++D       +++V+  GFSGHGFK+APVVG+IL +L +       +L  FR++RF    K ++
Sbjct:  218 PLQTLRINVCYWREKV-PGSYGVSQAFPCILGLDLAPHHIYGLPASEYPGLMKICYHHGDNVDPEERDC-PKTFSDIQDVQILCHFVRDHLPGL--RAEPDIMERCMYTNTPDEHFILDC--HPKYDNIVIGAGFSGHGFKLAPVVGKILYELSMK-LPPSYDLAPFRMSRFSTLSKAHL 390          
BLAST of CN184521 vs. ExPASy Swiss-Prot
Match: SOX_CAEEL (Putative sarcosine oxidase OS=Caenorhabditis elegans GN=C15B12.1 PE=2 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 1.243e-11
Identity = 53/174 (30.46%), Postives = 85/174 (48.85%), Query Frame = 3
Query:    6 IQAVETSVCYWRIKEGEADYAVGGD-FPS-FASYGDPHV--YGTPSLEYPGLIKIALHRGY-----LCDPDRRPWGPGPLLDSLKELIQGRFAGRVDSSGPAATQLCMYSMTPDKDFVIDFLGGELGEDVVVAGGFSGHGFKMAPVVGRILADLVLSGEAQGVELRHFRIARFK 500
            I+ +  SVCYW+ K     + +  D +P   A   D  V  Y  P  +YPG +K   H G      L  P +R       +D   + IQ ++   VD S P     C+Y+ +PD  ++I  +  +   +++V G  SG GFK+AP +G+ LA++  +G+   V++  F   RFK
Sbjct:  213 IEPISISVCYWKTKNESDSHLLNEDHYPVVIAQEMDLQVFHYSLPDTDYPGSMKFCYHFGDALTQDLAHPAQRSQR---CIDLPAKFIQ-KYMPVVDGSAPTRIDKCIYTNSPDDHYIIGTIPTK-NPNILVGGCGSGSGFKVAPGIGKALAEMA-AGKKTTVDVSFFSANRFK 380          
BLAST of CN184521 vs. ExPASy Swiss-Prot
Match: MTOX_SALTI (N-methyl-L-tryptophan oxidase OS=Salmonella typhi GN=solA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.769e-11
Identity = 57/181 (31.49%), Postives = 82/181 (45.30%), Query Frame = 3
Query:    3 PIQAVETSVCYWRIKEGEADYAVGGDFPSFASY---GDPHVYGTPSLEYPGLIKIALHRG---YLCDPDRRPWGPG--------PLLDSLKELIQGRFAGRVDSSGPAATQLCMYSMTPDKDFVIDFLGGELGEDVVVAGGFSGHGFKMAPVVGRILADLVLSGEAQGVELRHFRIARFKE 503
            P+Q V     +++    +  Y+    FP+F      GD H YG P+      +KI  H G        +R+P+           P L ++   I G   G            C Y  +PD+DF+ID L G   E+ +V  G SGHGFK APV+G I AD  L G+    +L  FR++RF +
Sbjct:  211 PVQPVRKVFAWFK---ADGRYSTKNRFPAFTGEMPNGD-HYYGFPAENDE--LKIGKHNGGQRIQAPEERKPFAAVASDGAEAFPFLRNVLPGIGGCLHGAA----------CTYDNSPDEDFIIDTLPGH--ENTLVITGLSGHGFKFAPVLGEIAADFAL-GKTPSFDLTPFRLSRFSQ 372          
BLAST of CN184521 vs. ExPASy Swiss-Prot
Match: MTOX_SALPB (N-methyl-L-tryptophan oxidase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=solA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.769e-11
Identity = 57/181 (31.49%), Postives = 82/181 (45.30%), Query Frame = 3
Query:    3 PIQAVETSVCYWRIKEGEADYAVGGDFPSFASY---GDPHVYGTPSLEYPGLIKIALHRG---YLCDPDRRPWGPG--------PLLDSLKELIQGRFAGRVDSSGPAATQLCMYSMTPDKDFVIDFLGGELGEDVVVAGGFSGHGFKMAPVVGRILADLVLSGEAQGVELRHFRIARFKE 503
            P+Q V     +++    +  Y+    FP+F      GD H YG P+      +KI  H G        +R+P+           P L ++   I G   G            C Y  +PD+DF+ID L G   E+ +V  G SGHGFK APV+G I AD  L G+    +L  FR++RF +
Sbjct:  211 PVQPVRKVFAWFK---ADGRYSTKNRFPAFTGEMPNGD-HYYGFPAENDE--LKIGKHNGGQLIQAPEERKPFAAVASDGAEAFPFLRNVLPGIGGCLHGAA----------CTYDNSPDEDFIIDTLPGH--ENTLVITGLSGHGFKFAPVLGEIAADFAL-GKTPSFDLTPFRLSRFSQ 372          
The following BLAST results are available for this feature:
BLAST of CN184521 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
SOX_ARATH5.305e-7169.10Probable sarcosine oxidase OS=Arabidopsis thaliana... [more]
SOX_BOVIN2.044e-2236.67Peroxisomal sarcosine oxidase OS=Bos taurus GN=PIP... [more]
SOX_RABIT3.487e-2236.31Peroxisomal sarcosine oxidase OS=Oryctolagus cunic... [more]
SOX_HUMAN3.487e-2236.31Peroxisomal sarcosine oxidase OS=Homo sapiens GN=P... [more]
SOX_MOUSE8.588e-2135.56Peroxisomal sarcosine oxidase OS=Mus musculus GN=P... [more]
SOX_CAEEL1.243e-1130.46Putative sarcosine oxidase OS=Caenorhabditis elega... [more]
MTOX_SALTI2.769e-1131.49N-methyl-L-tryptophan oxidase OS=Salmonella typhi ... [more]
MTOX_SALPB2.769e-1131.49N-methyl-L-tryptophan oxidase OS=Salmonella paraty... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0005K09_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005K09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184521 ID=CN184521; Name=CN184521; organism=Citrus sinensis; type=EST; length=529bp
GGCCAATTCAAGCTGTGGAGACTAGTGTGTGCTATTGGAGGATTAAGGAA
GGTGAAGCTGATTATGCTGTCGGCGGTGATTTTCCAAGTTTTGCAAGCTA
CGGTGACCCTCACGTTTACGGCACGCCGTCGTTGGAGTACCCAGGGCTGA
TTAAGATTGCGTTGCATCGTGGGTACCTGTGTGACCCGGATAGGAGGCCG
TGGGGACCTGGACCGTTGTTGGATTCGTTGAAGGAGTTGATTCAAGGGAG
GTTCGCCGGTAGGGTTGATTCAAGTGGTCCAGCAGCTACTCAATTGTGCA
TGTATTCAATGACCCCGGATAAGGATTTTGTGATTGATTTCCTGGGCGGG
GAATTAGGGGAGGATGTGGTGGTTGCCGGTGGGTTTTCCGGTCATGGGTT
CAAGATGGCTCCGGTCGTGGGGAGGATATTGGCTGATCTTGTGCTCAGTG
GGGAAGCACAAGGAGTGGAGCTACGGCACTTTAGGATAGCAAGGTTTAAA
GAGAATCCTAAAGGCAATGTCAAAGATTA
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