CN184520

Overview
NameCN184520
Unique NameCN184520
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length624
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184520 vs. ExPASy Swiss-Prot
Match: SOX_ARATH (Probable sarcosine oxidase OS=Arabidopsis thaliana GN=At2g24580 PE=2 SV=1)

HSP 1 Score: 244.588 bits (623), Expect = 3.069e-64
Identity = 114/161 (70.81%), Postives = 131/161 (81.37%), Query Frame = -3
Query:  116 FPSFASYGDPHVYGTPSLEYPGLIKIALHRGYLCDPDRRPWGPGPLLDSLKELIQGRFAGRVDSSGPAATQLCMYSMTPDKDFVIDFLGGELGEDVVVAGGFSGHGFKMAPVVGRILADLVLSGEA--QGVELRHFRIARFKENPKGNVKDYEEQVSFSVP 592
            FP+FASYG P+VYGTPSLEYPGLIK+A+H GY CDPD+RPWGPG  L+ LKE I+ RF G VDS GP ATQLCMYSMTPD+DFVIDFLGGE G DVVV GGFSGHGFKMAP VGRILAD+ +  EA   GVE++ F + RF++NPKGN K+Y +QV   VP
Sbjct:  253 FPTFASYGAPYVYGTPSLEYPGLIKVAVHGGYWCDPDKRPWGPGVKLEELKEWIKERFGGMVDSEGPVATQLCMYSMTPDEDFVIDFLGGEFGRDVVVGGGFSGHGFKMAPAVGRILADMAMEVEAGGGGVEMKQFSLRRFEDNPKGNAKEYPDQVILDVP 413          
BLAST of CN184520 vs. ExPASy Swiss-Prot
Match: SOX_BOVIN (Peroxisomal sarcosine oxidase OS=Bos taurus GN=PIPOX PE=2 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 2.155e-17
Identity = 57/154 (37.01%), Postives = 80/154 (51.95%), Query Frame = -3
Query:  152 FPSFASYG----DPHVYGTPSLEYPGLIKIALHRGYLCDPDRRPWGPGPLLDSLK-ELIQGRFAGRVD--SSGPAATQLCMYSMTPDKDFVIDFLGGELGEDVVVAGGFSGHGFKMAPVVGRILADLVLSGEAQGVELRHFRIARFKENPKGNV 592
            FP F   G      H+YG PS EYPGL+K+  H G   DP+ R   P    D     ++ G     +      PA  + CMY+ TPD  FV+D       +++V+  GFSGHGFK++PVVG+IL +L +       +L  FRI+RF    K ++
Sbjct:  243 FPCFMGLGLSLAPHHIYGLPSREYPGLMKVCYHHGNNADPEERDC-PAAFSDIQDVHILSGFVRDHLPDLQPEPAVMEHCMYTNTPDGHFVLD--RHPKYDNIVIGAGFSGHGFKLSPVVGKILYELSMK-LTPSYDLTPFRISRFPSLGKAHL 392          
BLAST of CN184520 vs. ExPASy Swiss-Prot
Match: SOX_RABIT (Peroxisomal sarcosine oxidase OS=Oryctolagus cuniculus GN=PIPOX PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.815e-17
Identity = 56/153 (36.60%), Postives = 82/153 (53.59%), Query Frame = -3
Query:  152 FPSFASYG--DPHVYGTPSLEYPGLIKIALHRGYLCDPDRR--PWGPGPLLDS--LKELIQGRFAGRVDSSGPAATQLCMYSMTPDKDFVIDFLGGELGEDVVVAGGFSGHGFKMAPVVGRILADLVLSGEAQGVELRHFRIARFKENPKGNV 592
            FP F   G    H+YG P+ EYPGL+K++ H G   DP+ R  P     + D   L   ++           PA  + CMY+ TPD+ F++D       +++V+  GFSGHGFK+APVVG+IL +L +       +L  FRI+RF    K ++
Sbjct:  243 FPCFLWLGLCPHHIYGLPTGEYPGLMKVSYHHGNHADPEERDCPTARTDIGDVQILSSFVRDHLPDLKPE--PAVIESCMYTNTPDEQFILD--RHPKYDNIVIGAGFSGHGFKLAPVVGKILYELSMK-LTPSYDLAPFRISRFPSLGKAHL 390          
BLAST of CN184520 vs. ExPASy Swiss-Prot
Match: SOX_HUMAN (Peroxisomal sarcosine oxidase OS=Homo sapiens GN=PIPOX PE=2 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 2.815e-17
Identity = 56/153 (36.60%), Postives = 82/153 (53.59%), Query Frame = -3
Query:  152 FPSFASYG--DPHVYGTPSLEYPGLIKIALHRGYLCDPDRR--PWGPGPLLDS--LKELIQGRFAGRVDSSGPAATQLCMYSMTPDKDFVIDFLGGELGEDVVVAGGFSGHGFKMAPVVGRILADLVLSGEAQGVELRHFRIARFKENPKGNV 592
            FP F   G    H+YG P+ EYPGL+K++ H G   DP+ R  P     + D   L   ++           PA  + CMY+ TPD+ F++D       +++V+  GFSGHGFK+APVVG+IL +L +       +L  FRI+RF    K ++
Sbjct:  243 FPCFLWLGLCPHHIYGLPTGEYPGLMKVSYHHGNHADPEERDCPTARTDIGDVQILSSFVRDHLPDLKPE--PAVIESCMYTNTPDEQFILD--RHPKYDNIVIGAGFSGHGFKLAPVVGKILYELSMK-LTPSYDLAPFRISRFPSLGKAHL 390          
BLAST of CN184520 vs. ExPASy Swiss-Prot
Match: SOX_MOUSE (Peroxisomal sarcosine oxidase OS=Mus musculus GN=Pipox PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.064e-16
Identity = 52/142 (36.62%), Postives = 77/142 (54.23%), Query Frame = -3
Query:  152 HVYGTPSLEYPGLIKIALHRGYLCDPDRRPWGPGPLLDS-----LKELIQGRFAGRVDSSGPAATQLCMYSMTPDKDFVIDFLGGELGEDVVVAGGFSGHGFKMAPVVGRILADLVLSGEAQGVELRHFRIARFKENPKGNV 562
            H+YG P+ EYPGL+KI  H G   DP+ R   P    D      L   ++    G    + P   + CMY+ TPD+ F++D       +++V+  GFSGHGFK+APVVG+IL +L +       +L  FR++RF    K ++
Sbjct:  255 HIYGLPASEYPGLMKICYHHGDNVDPEERDC-PKTFSDIQDVQILCHFVRDHLPGL--RAEPDIMERCMYTNTPDEHFILDC--HPKYDNIVIGAGFSGHGFKLAPVVGKILYELSMK-LPPSYDLAPFRMSRFSTLSKAHL 390          
The following BLAST results are available for this feature:
BLAST of CN184520 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
SOX_ARATH3.069e-6470.81Probable sarcosine oxidase OS=Arabidopsis thaliana... [more]
SOX_BOVIN2.155e-1737.01Peroxisomal sarcosine oxidase OS=Bos taurus GN=PIP... [more]
SOX_RABIT2.815e-1736.60Peroxisomal sarcosine oxidase OS=Oryctolagus cunic... [more]
SOX_HUMAN2.815e-1736.60Peroxisomal sarcosine oxidase OS=Homo sapiens GN=P... [more]
SOX_MOUSE4.064e-1636.62Peroxisomal sarcosine oxidase OS=Mus musculus GN=P... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0005K09_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005K09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184520 ID=CN184520; Name=CN184520; organism=Citrus sinensis; type=EST; length=624bp
ATGCAAGATAAACAAAATAAGATACCCATAGCCACCATTAATGTACTAAA
ATTGGTTACATGGATTATTGCAGATGGGATTTCAAGAAAGACTAATATCA
AACGGCTCACTGTGGAGGGACACTGAAGCTAACTTGTTCTTCATAATCTT
TGACATTGCCTTTAGGATTCTCTTTAAACCTTGCTATCCTAAAGTGCCGT
AGCTCCACTCCTTGTGCTTCCCCACTGAGCACAAGATCAGCCAATATCCT
CCCCACGACCGGAGCCATCTTGAACCCATGACCGGAAAACCCACCGGCAA
CCACCACATCCTCCCCTAATTCCCCGCCCAGGAAATCAATCACAAAATCC
TTATCCGGGGTCATTGAATACATGCACAATTGAGTAGCTGCTGGACCACT
TGAATCAACCCTACCGGCGAACCTCCCTTGAATCAACTCCTTCAACGAAT
CCAACAACGGTCCAGGTCCCCACGGCCTCCTATCCGGGTCACACAGGTAC
CCACGATGCAACGCAATCTTAATCAGCCCTGGGTACTCCAACGACGGCGT
GCCGTAAACGTGAGGGTCACCGTAGCTTGCAAAACTTGGAAATCACCGCC
GACAGCATAATCAGCTTCACCTTC
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