CN184514

Overview
NameCN184514
Unique NameCN184514
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length563
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184514 vs. ExPASy Swiss-Prot
Match: MED6_DICDI (Putative mediator of RNA polymerase II transcription subunit 6 OS=Dictyostelium discoideum GN=med6 PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.101e-27
Identity = 67/176 (38.07%), Postives = 104/176 (59.09%), Query Frame = 1
Query:   13 DMTGICFRDQLWLNTYPLDRNMIFDYFTLSLFYDRTCNNEQLRMRSIHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTTAASKLE---KIGY-VDAENDGGTPLHSKAGKETIDLKEVKRVDQILASL 528
            D+T + +RD LWL  YPL+   I  YF+ S FYD+ CNNEQL+M+    LD+S L  M G+EY L + +EP  F+I KQ R  P  V     YYV++G+IYQAP+L  VF +R+ +++ ++ +AF + +S +      GY ++ +          A      +++ KR+DQ++ SL
Sbjct:   65 DLTQVMWRDPLWLQMYPLNPQTILQYFSYSQFYDKNCNNEQLKMQR---LDLSALKNMDGLEYELIKFVEPSFFLIAKQTRISPTDVLINTLYYVINGNIYQAPELHVVFKSRVSQSISHLSEAFNSISSIVNWDIVNGYSLNLDPSNQQEKSKLAAYSRKQIEDTKRLDQLINSL 237          
BLAST of CN184514 vs. ExPASy Swiss-Prot
Match: MED6_MOUSE (Mediator of RNA polymerase II transcription subunit 6 OS=Mus musculus GN=Med6 PE=2 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 5.653e-24
Identity = 69/184 (37.50%), Postives = 103/184 (55.98%), Query Frame = 1
Query:   13 DMTGICFRDQLWLNTYPLDRNMIFDYFT--LSLFYDRTCNNEQLRMRSIHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTTAASKLE---KIGY----VDAENDGGTPLHSKAGKETIDLKEVKRVDQILASLQRK 537
            ++ GI + D  W+    L+   + DYF+   + FYDRTCNNE ++M+    L +  L++M GIEY+L    EP LF+IRKQ+R  P +V P+  YY++ G IYQAP L +V ++R+  A+H IQ AF  A S        GY     D E        +K  +E   + + +RVD +L  L++K
Sbjct:    9 NLLGISWVDSSWIPI--LNSGSVLDYFSERSNPFYDRTCNNEVVKMQR---LTLEHLNQMVGIEYILLHAQEPILFIIRKQQRQSPAQVIPLADYYIIAGVIYQAPDLGSVINSRVLTAVHGIQSAFDEAMSYCRYHPSKGYWWHFKDHEEQEKVKPKAKRKEEPSSIFQRQRVDALLIDLRQK 187          
BLAST of CN184514 vs. ExPASy Swiss-Prot
Match: MED6_HUMAN (Mediator of RNA polymerase II transcription subunit 6 OS=Homo sapiens GN=MED6 PE=1 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 5.653e-24
Identity = 69/184 (37.50%), Postives = 103/184 (55.98%), Query Frame = 1
Query:   13 DMTGICFRDQLWLNTYPLDRNMIFDYFT--LSLFYDRTCNNEQLRMRSIHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTTAASKLE---KIGY----VDAENDGGTPLHSKAGKETIDLKEVKRVDQILASLQRK 537
            ++ GI + D  W+    L+   + DYF+   + FYDRTCNNE ++M+    L +  L++M GIEY+L    EP LF+IRKQ+R  P +V P+  YY++ G IYQAP L +V ++R+  A+H IQ AF  A S        GY     D E        +K  +E   + + +RVD +L  L++K
Sbjct:    9 NLLGISWVDSSWIPI--LNSGSVLDYFSERSNPFYDRTCNNEVVKMQR---LTLEHLNQMVGIEYILLHAQEPILFIIRKQQRQSPAQVIPLADYYIIAGVIYQAPDLGSVINSRVLTAVHGIQSAFDEAMSYCRYHPSKGYWWHFKDHEEQDKVRPKAKRKEEPSSIFQRQRVDALLLDLRQK 187          
BLAST of CN184514 vs. ExPASy Swiss-Prot
Match: MED6_BOVIN (Mediator of RNA polymerase II transcription subunit 6 OS=Bos taurus GN=MED6 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.259e-23
Identity = 68/184 (36.96%), Postives = 102/184 (55.43%), Query Frame = 1
Query:   13 DMTGICFRDQLWLNTYPLDRNMIFDYFT--LSLFYDRTCNNEQLRMRSIHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTTAASKLE---KIGY----VDAENDGGTPLHSKAGKETIDLKEVKRVDQILASLQRK 537
            ++ GI + D  W+    L+   + DYF+   + FYDRTCNNE ++M+    L +  L++M G+EY+L    EP LF+IRKQ+R  P +V P+  YY++ G IYQAP L +V ++R+  A+H IQ AF  A S        GY     D E         K  +E   + + +RVD +L  L++K
Sbjct:    9 NLLGISWVDSSWIPI--LNSGSVLDYFSERSNPFYDRTCNNEVVKMQR---LTLEHLNQMVGVEYILLHAQEPILFIIRKQQRQSPTQVIPLADYYIIAGVIYQAPDLGSVINSRVLTAVHGIQSAFDEAMSYCRYHPSKGYWWHFKDHEEQDKVKPKVKRKEEPSSIFQRQRVDALLLDLRQK 187          
BLAST of CN184514 vs. ExPASy Swiss-Prot
Match: MED6_PONAB (Mediator of RNA polymerase II transcription subunit 6 OS=Pongo abelii GN=MED6 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.645e-23
Identity = 68/184 (36.96%), Postives = 103/184 (55.98%), Query Frame = 1
Query:   13 DMTGICFRDQLWLNTYPLDRNMIFDYFT--LSLFYDRTCNNEQLRMRSIHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTTAASKLE---KIGY----VDAENDGGTPLHSKAGKETIDLKEVKRVDQILASLQRK 537
            ++ GI + D  W+    L+   + DYF+   + FYDRTCNNE ++M+    L +  L++M GIEY+L    EP LF+IRKQ+R  P +V P+  YY++ G IYQAP L +V ++R+  A+H IQ AF  A S        GY     + E        +K  +E   + + +RVD +L  L++K
Sbjct:    9 NLLGISWVDSSWIPI--LNSGSVLDYFSERSNPFYDRTCNNEVVKMQR---LTLEHLNQMVGIEYILLHAQEPILFIIRKQQRQSPAQVIPLADYYIIAGVIYQAPDLGSVINSRVLTAVHGIQSAFDEAMSYCRYHPSKGYWWHFKEHEEQDKVRPKAKRKEEPSSIFQRQRVDALLLDLRQK 187          
BLAST of CN184514 vs. ExPASy Swiss-Prot
Match: MED6_ANOGA (Mediator of RNA polymerase II transcription subunit 6 OS=Anopheles gambiae GN=MED6 PE=3 SV=3)

HSP 1 Score: 106.301 bits (264), Expect = 1.066e-22
Identity = 66/185 (35.68%), Postives = 100/185 (54.05%), Query Frame = 1
Query:   25 ICFRDQLWLNTYPLDRNMIFDYFT--LSLFYDRTCNNEQLRMRSIHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTTAASKLE---KIGY---------VDAENDGGTPLHSKAGKETIDLKEVKRVDQILASLQRK 537
            I + D  W+    L+   + DYF+   + FYDRTCNNE +RM+      +  L+ MTG+EY+   V +P L+VIRKQ R  P + TPM  YY++ G++YQAP L +VF++RI   +H++Q AF  A+S        GY         +  +    T   +   +E   + + +RVD +L  L RK
Sbjct:   19 ISWHDSNWIPV--LNPGNVMDYFSEKSNPFYDRTCNNEIVRMQR---QSLELLNNMTGVEYIPLHVQDPILYVIRKQHRHSPTEATPMADYYIIAGTVYQAPDLASVFNSRILSTVHHLQTAFDEASSYSRYHPSKGYSWDFSSNKAIAEKTKTQTKKEAPVKEEPSSIFQRQRVDMLLGDLLRK 198          
BLAST of CN184514 vs. ExPASy Swiss-Prot
Match: MED6_DANRE (Mediator of RNA polymerase II transcription subunit 6 OS=Danio rerio GN=med6 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.179e-21
Identity = 66/184 (35.87%), Postives = 101/184 (54.89%), Query Frame = 1
Query:   13 DMTGICFRDQLWLNTYPLDRNMIFDYFT--LSLFYDRTCNNEQLRMRSIHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTTAASKLE---KIGY----VDAENDGGTPLHSKAGKETIDLKEVKRVDQILASLQRK 537
            ++ GI + D  W+    L+ + + +YF+   + FYDRTCNNE ++M+      +  L+++ G+EY+L    EP L++IRKQ+R  P +V P+  YY++ G +YQAP L +V S+R   A+H IQ AF  A S        GY     D E        SK  +E   L + +RVD +L  L+ K
Sbjct:    9 NLLGISWVDSGWVPI--LNPSNVLEYFSERSNPFYDRTCNNEVVKMQRS---TLDHLTQLVGVEYILLHTQEPILYIIRKQQRQSPTQVIPLADYYIIAGVVYQAPDLGSVISSRALSAVHGIQSAFDEAMSFCRYHPSKGYWWHFKDQEEKERVKPKSKRKEEPSSLFQRQRVDTLLLDLRNK 187          
BLAST of CN184514 vs. ExPASy Swiss-Prot
Match: MED6_DROME (Mediator of RNA polymerase II transcription subunit 6 OS=Drosophila melanogaster GN=MED6 PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.903e-20
Identity = 62/173 (35.84%), Postives = 87/173 (50.29%), Query Frame = 1
Query:   64 LDRNMIFDYFTLSL--FYDRTCNNEQLRMRSIHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTTAASKLE---KIGYV----------DAENDGGTPLHSKAGKETIDLKEVKRVDQILASLQRK 537
            L    + DYF      FYD  CNNE +RM+ + P     L  M G+EY+L  V EP L+VIRKQ R  P + TP+  YY++ G++Y+AP L NV ++RI   +  +Q AF  A+S        GY           D         +S   + +  L + +RVD +LA L RK
Sbjct:   24 LSPQTVMDYFCRKSNPFYDHMCNNETVRMQRLGP---EHLHNMIGLEYILLHVAEPILYVIRKQHRHNPSEATPIADYYIIGGTVYKAPDLANVINSRILNTVVNLQSAFEEASSYARYHPNKGYTWDFSSNKVFSDRSKSDKKDANSAKDENSGTLFQKQRVDMLLAELLRK 193          
BLAST of CN184514 vs. ExPASy Swiss-Prot
Match: MED6_CANAL (Mediator of RNA polymerase II transcription subunit 6 OS=Candida albicans GN=MED6 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.300e-17
Identity = 43/109 (39.45%), Postives = 68/109 (62.39%), Query Frame = 1
Query:   64 LDRNMIFDYFTLSLFYDRTCNNEQLRMR------------SIHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARI 354
            L+ N + +YF+LS FYDRT NN+ L M+            S H    S+LS+MTGIE++++   EP  ++IRKQKR  P+    +  YY++  ++YQAP++ +V S+R+
Sbjct:   20 LNTNNVLEYFSLSPFYDRTSNNQVLMMQFQYQQIQIPPGVSFHQYFQSRLSEMTGIEFVIAYTKEPDFWIIRKQKRQDPQNTVTLQDYYIIGANVYQAPRIYDVLSSRL 128          
BLAST of CN184514 vs. ExPASy Swiss-Prot
Match: MED6_YARLI (Mediator of RNA polymerase II transcription subunit 6 OS=Yarrowia lipolytica GN=MED6 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.004e-17
Identity = 55/167 (32.93%), Postives = 90/167 (53.89%), Query Frame = 1
Query:   31 FRDQLWLNTYP-LDRNMIFDYFTLSLFYDRTCNNEQLRMRS---------IHPLDISQ-LSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTTAA-----SKLEKIGYVDAE-----NDGGTPLHSKA 468
            +R   W+  +  L  + + DYF  S FYDR  NN+ LRM++         + P    Q L KMTGIE++++ V EP L+VI+KQ R  P++ TP+ TY+V++ ++Y AP +  +  +R+     ++++A   A      S  +   Y D++     +D  TP  SKA
Sbjct:    9 WRSPEWIQAHQGLRTDNVLDYFAESPFYDRVSNNQVLRMQTQFNQQQTGQLTPQHFEQELQKMTGIEFVITHVREPDLWVIKKQNRLNPQQTTPISTYFVINENVYMAPTVAAIMQSRVLSTSMFLKRALEEAIELPSYSPSQGYTYEDSQLTTAGDDDSTPQASKA 175          
The following BLAST results are available for this feature:
BLAST of CN184514 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
MED6_DICDI1.101e-2738.07Putative mediator of RNA polymerase II transcripti... [more]
MED6_MOUSE5.653e-2437.50Mediator of RNA polymerase II transcription subuni... [more]
MED6_HUMAN5.653e-2437.50Mediator of RNA polymerase II transcription subuni... [more]
MED6_BOVIN1.259e-2336.96Mediator of RNA polymerase II transcription subuni... [more]
MED6_PONAB1.645e-2336.96Mediator of RNA polymerase II transcription subuni... [more]
MED6_ANOGA1.066e-2235.68Mediator of RNA polymerase II transcription subuni... [more]
MED6_DANRE1.179e-2135.87Mediator of RNA polymerase II transcription subuni... [more]
MED6_DROME2.903e-2035.84Mediator of RNA polymerase II transcription subuni... [more]
MED6_CANAL2.300e-1739.45Mediator of RNA polymerase II transcription subuni... [more]
MED6_YARLI3.004e-1732.93Mediator of RNA polymerase II transcription subuni... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0005K06_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005K06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184514 ID=CN184514; Name=CN184514; organism=Citrus sinensis; type=EST; length=563bp
CCACCGGGTACGGACATGACGGGGATCTGCTTCAGGGACCAATTGTGGCT
AAACACATACCCACTTGATCGAAACATGATATTTGATTACTTCACGTTGT
CTCTGTTTTATGATAGGACTTGCAACAATGAGCAGCTCAGAATGCGGTCC
ATCCACCCTCTAGACATCTCTCAACTCTCGAAAATGACTGGCATTGAATA
CATGCTTAGTGAAGTTATGGAGCCCCACCTCTTTGTTATCCGTAAGCAAA
AAAGGGATGGTCCTGAGAAAGTCACACCAATGCTCACTTATTATGTATTG
GATGGTTCAATTTACCAAGCACCACAACTTTGCAATGTCTTTTCAGCTAG
AATTGGACGGGCTCTCCACTATATACAGAAGGCTTTTACAACTGCTGCCT
CGAAGTTGGAGAAGATTGGATATGTTGATGCTGAAAATGATGGTGGTACT
CCTCTCCACTCAAAGGCTGGTAAAGAGACAATTGATTTGAAAGAAGTAAA
GCGAGTAGATCAAATACTTGCCTCCTTACAGCGCAAGCTACCACCGGCCC
CTCCACCTCCACC
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