CN184514
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN184514 vs. ExPASy Swiss-Prot
Match: MED6_DICDI (Putative mediator of RNA polymerase II transcription subunit 6 OS=Dictyostelium discoideum GN=med6 PE=3 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 1.101e-27 Identity = 67/176 (38.07%), Postives = 104/176 (59.09%), Query Frame = 1 Query: 13 DMTGICFRDQLWLNTYPLDRNMIFDYFTLSLFYDRTCNNEQLRMRSIHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTTAASKLE---KIGY-VDAENDGGTPLHSKAGKETIDLKEVKRVDQILASL 528 D+T + +RD LWL YPL+ I YF+ S FYD+ CNNEQL+M+ LD+S L M G+EY L + +EP F+I KQ R P V YYV++G+IYQAP+L VF +R+ +++ ++ +AF + +S + GY ++ + A +++ KR+DQ++ SL Sbjct: 65 DLTQVMWRDPLWLQMYPLNPQTILQYFSYSQFYDKNCNNEQLKMQR---LDLSALKNMDGLEYELIKFVEPSFFLIAKQTRISPTDVLINTLYYVINGNIYQAPELHVVFKSRVSQSISHLSEAFNSISSIVNWDIVNGYSLNLDPSNQQEKSKLAAYSRKQIEDTKRLDQLINSL 237
BLAST of CN184514 vs. ExPASy Swiss-Prot
Match: MED6_MOUSE (Mediator of RNA polymerase II transcription subunit 6 OS=Mus musculus GN=Med6 PE=2 SV=2) HSP 1 Score: 110.538 bits (275), Expect = 5.653e-24 Identity = 69/184 (37.50%), Postives = 103/184 (55.98%), Query Frame = 1 Query: 13 DMTGICFRDQLWLNTYPLDRNMIFDYFT--LSLFYDRTCNNEQLRMRSIHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTTAASKLE---KIGY----VDAENDGGTPLHSKAGKETIDLKEVKRVDQILASLQRK 537 ++ GI + D W+ L+ + DYF+ + FYDRTCNNE ++M+ L + L++M GIEY+L EP LF+IRKQ+R P +V P+ YY++ G IYQAP L +V ++R+ A+H IQ AF A S GY D E +K +E + + +RVD +L L++K Sbjct: 9 NLLGISWVDSSWIPI--LNSGSVLDYFSERSNPFYDRTCNNEVVKMQR---LTLEHLNQMVGIEYILLHAQEPILFIIRKQQRQSPAQVIPLADYYIIAGVIYQAPDLGSVINSRVLTAVHGIQSAFDEAMSYCRYHPSKGYWWHFKDHEEQEKVKPKAKRKEEPSSIFQRQRVDALLIDLRQK 187
BLAST of CN184514 vs. ExPASy Swiss-Prot
Match: MED6_HUMAN (Mediator of RNA polymerase II transcription subunit 6 OS=Homo sapiens GN=MED6 PE=1 SV=2) HSP 1 Score: 110.538 bits (275), Expect = 5.653e-24 Identity = 69/184 (37.50%), Postives = 103/184 (55.98%), Query Frame = 1 Query: 13 DMTGICFRDQLWLNTYPLDRNMIFDYFT--LSLFYDRTCNNEQLRMRSIHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTTAASKLE---KIGY----VDAENDGGTPLHSKAGKETIDLKEVKRVDQILASLQRK 537 ++ GI + D W+ L+ + DYF+ + FYDRTCNNE ++M+ L + L++M GIEY+L EP LF+IRKQ+R P +V P+ YY++ G IYQAP L +V ++R+ A+H IQ AF A S GY D E +K +E + + +RVD +L L++K Sbjct: 9 NLLGISWVDSSWIPI--LNSGSVLDYFSERSNPFYDRTCNNEVVKMQR---LTLEHLNQMVGIEYILLHAQEPILFIIRKQQRQSPAQVIPLADYYIIAGVIYQAPDLGSVINSRVLTAVHGIQSAFDEAMSYCRYHPSKGYWWHFKDHEEQDKVRPKAKRKEEPSSIFQRQRVDALLLDLRQK 187
BLAST of CN184514 vs. ExPASy Swiss-Prot
Match: MED6_BOVIN (Mediator of RNA polymerase II transcription subunit 6 OS=Bos taurus GN=MED6 PE=2 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 1.259e-23 Identity = 68/184 (36.96%), Postives = 102/184 (55.43%), Query Frame = 1 Query: 13 DMTGICFRDQLWLNTYPLDRNMIFDYFT--LSLFYDRTCNNEQLRMRSIHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTTAASKLE---KIGY----VDAENDGGTPLHSKAGKETIDLKEVKRVDQILASLQRK 537 ++ GI + D W+ L+ + DYF+ + FYDRTCNNE ++M+ L + L++M G+EY+L EP LF+IRKQ+R P +V P+ YY++ G IYQAP L +V ++R+ A+H IQ AF A S GY D E K +E + + +RVD +L L++K Sbjct: 9 NLLGISWVDSSWIPI--LNSGSVLDYFSERSNPFYDRTCNNEVVKMQR---LTLEHLNQMVGVEYILLHAQEPILFIIRKQQRQSPTQVIPLADYYIIAGVIYQAPDLGSVINSRVLTAVHGIQSAFDEAMSYCRYHPSKGYWWHFKDHEEQDKVKPKVKRKEEPSSIFQRQRVDALLLDLRQK 187
BLAST of CN184514 vs. ExPASy Swiss-Prot
Match: MED6_PONAB (Mediator of RNA polymerase II transcription subunit 6 OS=Pongo abelii GN=MED6 PE=2 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 1.645e-23 Identity = 68/184 (36.96%), Postives = 103/184 (55.98%), Query Frame = 1 Query: 13 DMTGICFRDQLWLNTYPLDRNMIFDYFT--LSLFYDRTCNNEQLRMRSIHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTTAASKLE---KIGY----VDAENDGGTPLHSKAGKETIDLKEVKRVDQILASLQRK 537 ++ GI + D W+ L+ + DYF+ + FYDRTCNNE ++M+ L + L++M GIEY+L EP LF+IRKQ+R P +V P+ YY++ G IYQAP L +V ++R+ A+H IQ AF A S GY + E +K +E + + +RVD +L L++K Sbjct: 9 NLLGISWVDSSWIPI--LNSGSVLDYFSERSNPFYDRTCNNEVVKMQR---LTLEHLNQMVGIEYILLHAQEPILFIIRKQQRQSPAQVIPLADYYIIAGVIYQAPDLGSVINSRVLTAVHGIQSAFDEAMSYCRYHPSKGYWWHFKEHEEQDKVRPKAKRKEEPSSIFQRQRVDALLLDLRQK 187
BLAST of CN184514 vs. ExPASy Swiss-Prot
Match: MED6_ANOGA (Mediator of RNA polymerase II transcription subunit 6 OS=Anopheles gambiae GN=MED6 PE=3 SV=3) HSP 1 Score: 106.301 bits (264), Expect = 1.066e-22 Identity = 66/185 (35.68%), Postives = 100/185 (54.05%), Query Frame = 1 Query: 25 ICFRDQLWLNTYPLDRNMIFDYFT--LSLFYDRTCNNEQLRMRSIHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTTAASKLE---KIGY---------VDAENDGGTPLHSKAGKETIDLKEVKRVDQILASLQRK 537 I + D W+ L+ + DYF+ + FYDRTCNNE +RM+ + L+ MTG+EY+ V +P L+VIRKQ R P + TPM YY++ G++YQAP L +VF++RI +H++Q AF A+S GY + + T + +E + + +RVD +L L RK Sbjct: 19 ISWHDSNWIPV--LNPGNVMDYFSEKSNPFYDRTCNNEIVRMQR---QSLELLNNMTGVEYIPLHVQDPILYVIRKQHRHSPTEATPMADYYIIAGTVYQAPDLASVFNSRILSTVHHLQTAFDEASSYSRYHPSKGYSWDFSSNKAIAEKTKTQTKKEAPVKEEPSSIFQRQRVDMLLGDLLRK 198
BLAST of CN184514 vs. ExPASy Swiss-Prot
Match: MED6_DANRE (Mediator of RNA polymerase II transcription subunit 6 OS=Danio rerio GN=med6 PE=2 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 1.179e-21 Identity = 66/184 (35.87%), Postives = 101/184 (54.89%), Query Frame = 1 Query: 13 DMTGICFRDQLWLNTYPLDRNMIFDYFT--LSLFYDRTCNNEQLRMRSIHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTTAASKLE---KIGY----VDAENDGGTPLHSKAGKETIDLKEVKRVDQILASLQRK 537 ++ GI + D W+ L+ + + +YF+ + FYDRTCNNE ++M+ + L+++ G+EY+L EP L++IRKQ+R P +V P+ YY++ G +YQAP L +V S+R A+H IQ AF A S GY D E SK +E L + +RVD +L L+ K Sbjct: 9 NLLGISWVDSGWVPI--LNPSNVLEYFSERSNPFYDRTCNNEVVKMQRS---TLDHLTQLVGVEYILLHTQEPILYIIRKQQRQSPTQVIPLADYYIIAGVVYQAPDLGSVISSRALSAVHGIQSAFDEAMSFCRYHPSKGYWWHFKDQEEKERVKPKSKRKEEPSSLFQRQRVDTLLLDLRNK 187
BLAST of CN184514 vs. ExPASy Swiss-Prot
Match: MED6_DROME (Mediator of RNA polymerase II transcription subunit 6 OS=Drosophila melanogaster GN=MED6 PE=1 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 2.903e-20 Identity = 62/173 (35.84%), Postives = 87/173 (50.29%), Query Frame = 1 Query: 64 LDRNMIFDYFTLSL--FYDRTCNNEQLRMRSIHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTTAASKLE---KIGYV----------DAENDGGTPLHSKAGKETIDLKEVKRVDQILASLQRK 537 L + DYF FYD CNNE +RM+ + P L M G+EY+L V EP L+VIRKQ R P + TP+ YY++ G++Y+AP L NV ++RI + +Q AF A+S GY D +S + + L + +RVD +LA L RK Sbjct: 24 LSPQTVMDYFCRKSNPFYDHMCNNETVRMQRLGP---EHLHNMIGLEYILLHVAEPILYVIRKQHRHNPSEATPIADYYIIGGTVYKAPDLANVINSRILNTVVNLQSAFEEASSYARYHPNKGYTWDFSSNKVFSDRSKSDKKDANSAKDENSGTLFQKQRVDMLLAELLRK 193
BLAST of CN184514 vs. ExPASy Swiss-Prot
Match: MED6_CANAL (Mediator of RNA polymerase II transcription subunit 6 OS=Candida albicans GN=MED6 PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 2.300e-17 Identity = 43/109 (39.45%), Postives = 68/109 (62.39%), Query Frame = 1 Query: 64 LDRNMIFDYFTLSLFYDRTCNNEQLRMR------------SIHPLDISQLSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARI 354 L+ N + +YF+LS FYDRT NN+ L M+ S H S+LS+MTGIE++++ EP ++IRKQKR P+ + YY++ ++YQAP++ +V S+R+ Sbjct: 20 LNTNNVLEYFSLSPFYDRTSNNQVLMMQFQYQQIQIPPGVSFHQYFQSRLSEMTGIEFVIAYTKEPDFWIIRKQKRQDPQNTVTLQDYYIIGANVYQAPRIYDVLSSRL 128
BLAST of CN184514 vs. ExPASy Swiss-Prot
Match: MED6_YARLI (Mediator of RNA polymerase II transcription subunit 6 OS=Yarrowia lipolytica GN=MED6 PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 3.004e-17 Identity = 55/167 (32.93%), Postives = 90/167 (53.89%), Query Frame = 1 Query: 31 FRDQLWLNTYP-LDRNMIFDYFTLSLFYDRTCNNEQLRMRS---------IHPLDISQ-LSKMTGIEYMLSEVMEPHLFVIRKQKRDGPEKVTPMLTYYVLDGSIYQAPQLCNVFSARIGRALHYIQKAFTTAA-----SKLEKIGYVDAE-----NDGGTPLHSKA 468 +R W+ + L + + DYF S FYDR NN+ LRM++ + P Q L KMTGIE++++ V EP L+VI+KQ R P++ TP+ TY+V++ ++Y AP + + +R+ ++++A A S + Y D++ +D TP SKA Sbjct: 9 WRSPEWIQAHQGLRTDNVLDYFAESPFYDRVSNNQVLRMQTQFNQQQTGQLTPQHFEQELQKMTGIEFVITHVREPDLWVIKKQNRLNPQQTTPISTYFVINENVYMAPTVAAIMQSRVLSTSMFLKRALEEAIELPSYSPSQGYTYEDSQLTTAGDDDSTPQASKA 175 The following BLAST results are available for this feature:
BLAST of CN184514 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 19
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Sequences
The
following sequences are available for this feature:
EST sequence >CN184514 ID=CN184514; Name=CN184514; organism=Citrus sinensis; type=EST; length=563bpback to top |