CN184502

Overview
NameCN184502
Unique NameCN184502
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length357
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1011 contig Csv1_Contig1011:630..986. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCB_ORYSJ (Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial OS=Oryza sativa subsp. japonica GN=Os02g0621700 PE=1 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 1.041e-52
Identity = 99/118 (83.90%), Postives = 109/118 (92.37%), Query Frame = -3
Query:    2 YLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 355
            YLCEKLSLVNEMYFAI LDR TAGP+II CSKGGTSIEDLAEKYP+MI+KVPIDVF GITD+DAAKVVDGLAPK ADR  +IEQ+KKLY+LFC+SDCTLLEINPLAET+  +LVAADA
Sbjct:  132 YLCEKLSLVNEMYFAITLDRNTAGPLIIACSKGGTSIEDLAEKYPDMIIKVPIDVFKGITDDDAAKVVDGLAPKTADRQSSIEQIKKLYELFCKSDCTLLEINPLAETADNKLVAADA 249          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCB_ARATH (Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial OS=Arabidopsis thaliana GN=At2g20420 PE=1 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 1.964e-51
Identity = 98/118 (83.05%), Postives = 110/118 (93.22%), Query Frame = -3
Query:    2 YLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 355
            YLCEKLSLVNEMYF+I+LDRK+AGP+II C KGGTSIEDLAEK+P+MI+KVPIDVF GITDEDAAKVVDGLAPK ADR D+IEQVKKLY+LF ++DCT+LEINPLAETS  QLVAADA
Sbjct:  131 YLCEKLSLVNEMYFSIILDRKSAGPLIIACKKGGTSIEDLAEKFPDMIIKVPIDVFAGITDEDAAKVVDGLAPKAADRKDSIEQVKKLYELFRKTDCTMLEINPLAETSTNQLVAADA 248          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCB1_DICDI (Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial OS=Dictyostelium discoideum GN=scsC PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.118e-21
Identity = 49/118 (41.53%), Postives = 74/118 (62.71%), Query Frame = -3
Query:    2 YLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 355
            Y+ E+  L  EMYFAI++DRK  GP+++   +GG  IE +A   P+ I K PID+  G+  E   ++ + L     + + A +Q+KKLY  F ++DCTL+EINPLAET+   ++  DA
Sbjct:  138 YVTERHFLRKEMYFAILMDRKAGGPVMVASPEGGVDIEGVARDNPSAIFKEPIDIMIGVQPEQTKRLAEKLGFSKKNISMAQDQMKKLYDFFIKNDCTLVEINPLAETASGDVLCMDA 255          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCB_NEUCR (Probable succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial OS=Neurospora crassa GN=B9J10.140 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.373e-20
Identity = 48/118 (40.68%), Postives = 73/118 (61.86%), Query Frame = -3
Query:    2 YLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 355
            Y+CE+     E Y A+++DR + GP+I+  S+GG  IE +A++ P  I    ID+  G+TDE A  +   L        +A + ++KLYK+FCE D T +EINPL+ETS  +++A DA
Sbjct:  140 YICERKFARREFYLAVLMDRASQGPVIVSSSQGGMDIEGVAKENPEAIHTTYIDINVGVTDEMARDIATKLGFSEQCVEEAKDTIQKLYKIFCEKDATQIEINPLSETSDHKVMAMDA 257          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCB2_MOUSE (Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial OS=Mus musculus GN=Suclg2 PE=2 SV=3)

HSP 1 Score: 95.9005 bits (237), Expect = 6.813e-20
Identity = 47/117 (40.17%), Postives = 69/117 (58.97%), Query Frame = -3
Query:    2 LCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 352
            + E L +  E Y AI++DR   GP+I+G  +GG  IE++A   P +I K  ID+F GI D  A ++ + L    + +N A +Q+ KLY LF + D T +E+NP  ET   Q+V  DA
Sbjct:  143 VAEALDISRETYLAILMDRSHNGPVIVGSPQGGVDIEEVAASSPELIFKEQIDIFEGIKDSQAQRMAENLGFLGSLKNQAADQITKLYHLFLKIDATQVEVNPFGETPEGQVVCFDA 259          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCB2_DICDI (Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial OS=Dictyostelium discoideum GN=scsB PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.898e-20
Identity = 48/117 (41.03%), Postives = 71/117 (60.68%), Query Frame = -3
Query:    2 LCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 352
            L E +    E+YFAI++DRK  GP++I   +GG  IE +AE+ P++I K PID+  GI  E    + + L         A +Q++ LY+LF +SD T +EINP AET+  Q++  DA
Sbjct:  131 LAESVDPKRELYFAIVMDRKYGGPVMIASPQGGVDIESVAEETPDLIFKEPIDIVKGIRPEQTKNLAEKLGFTGEKAKIAQQQMENLYQLFIKSDATQVEINPFAETTDGQVICMDA 247          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCB2_BOVIN (Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial OS=Bos taurus GN=SUCLG2 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 1.162e-19
Identity = 46/117 (39.32%), Postives = 68/117 (58.12%), Query Frame = -3
Query:    2 LCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 352
            + E L +  E Y AI++DR   GP+++G  +GG  IE++A   P +I K  ID+  GI D  A ++ + L      +N A +Q+KKLY LF + D T +E+NP  ET   Q+V  DA
Sbjct:  142 VAEALDISRETYLAILMDRSCNGPVLVGSPQGGVDIEEVAASNPELIFKEQIDIIEGIKDSQAQRMAENLGFLGPLKNQAADQIKKLYNLFLKIDATQVEVNPFGETPEGQVVCFDA 258          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCB2_PIG (Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial (Fragment) OS=Sus scrofa GN=SUCLG2 PE=1 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 1.518e-19
Identity = 46/117 (39.32%), Postives = 68/117 (58.12%), Query Frame = -3
Query:    2 LCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 352
            + E L +  E Y AI++DR   GP+++G  +GG  IE++A   P +I K  ID+  GI D  A ++ + L      +N A +Q+KKLY LF + D T +E+NP  ET   Q+V  DA
Sbjct:  143 VAEALDISRETYLAILMDRSCNGPVLVGSPQGGVDIEEVAASNPELIFKEQIDIIEGIKDSQAQRMAENLGFLGPLQNQAADQIKKLYNLFLKIDATQVEVNPFGETPEGQVVCFDA 259          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCB1_PIG (Succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial (Fragment) OS=Sus scrofa GN=SUCLA2 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.518e-19
Identity = 50/119 (42.02%), Postives = 71/119 (59.66%), Query Frame = -3
Query:    2 LCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVD--GLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 352
            +CE+     E YFAI ++R   GP++IG S+GG +IED+A + P  IVK PID+  GI  E A ++    G  P + D   A E + KLY LF + D T++EINP+ E S   ++  DA
Sbjct:  119 VCERRYPRREYYFAITMERSFQGPVLIGSSQGGVNIEDVAAETPEAIVKEPIDIVEGIKKEQAVRLAQKMGFPPSIVD--SAAENMIKLYNLFLKYDATMVEINPMVEDSDGAVLCMDA 235          
BLAST of CN184502 vs. ExPASy Swiss-Prot
Match: SUCB2_HUMAN (Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial OS=Homo sapiens GN=SUCLG2 PE=1 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 4.416e-19
Identity = 45/117 (38.46%), Postives = 68/117 (58.12%), Query Frame = -3
Query:    2 LCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADA 352
            + E L +  E Y AI++DR   GP+++G  +GG  IE++A   P +I K  ID+F GI D  A ++ + L      ++ A +Q+ KLY LF + D T +E+NP  ET   Q+V  DA
Sbjct:  142 VAEALDISRETYLAILMDRSCNGPVLVGSPQGGVDIEEVAASNPELIFKEQIDIFEGIKDSQAQRMAENLGFVGPLKSQAADQITKLYNLFLKIDATQVEVNPFGETPEGQVVCFDA 258          
The following BLAST results are available for this feature:
BLAST of CN184502 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 231
Match NameE-valueIdentityDescription
SUCB_ORYSJ1.041e-5283.90Succinyl-CoA ligase [GDP-forming] subunit beta, mi... [more]
SUCB_ARATH1.964e-5183.05Succinyl-CoA ligase [GDP-forming] subunit beta, mi... [more]
SUCB1_DICDI2.118e-2141.53Succinyl-CoA ligase [ADP-forming] subunit beta, mi... [more]
SUCB_NEUCR1.373e-2040.68Probable succinyl-CoA ligase [GDP-forming] subunit... [more]
SUCB2_MOUSE6.813e-2040.17Succinyl-CoA ligase [GDP-forming] subunit beta, mi... [more]
SUCB2_DICDI8.898e-2041.03Succinyl-CoA ligase [GDP-forming] subunit beta, mi... [more]
SUCB2_BOVIN1.162e-1939.32Succinyl-CoA ligase [GDP-forming] subunit beta, mi... [more]
SUCB2_PIG1.518e-1939.32Succinyl-CoA ligase [GDP-forming] subunit beta, mi... [more]
SUCB1_PIG1.518e-1942.02Succinyl-CoA ligase [ADP-forming] subunit beta, mi... [more]
SUCB2_HUMAN4.416e-1938.46Succinyl-CoA ligase [GDP-forming] subunit beta, mi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0005J24_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005J24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184502 ID=CN184502; Name=CN184502; organism=Citrus sinensis; type=EST; length=357bp
TAGCATCAGCAGCCACCAACTGCTTACCAGAAGTCTCTGCTAGAGGATTG
ATTTCCAATAATGTGCAGTCACTCTCACAAAAGAGTTTATACAGTTTCTT
CACTTGTTCAATTGCATCATTTCTATCAGCAACCTTGGGCGCCAAACCAT
CAACAACCTTAGCAGCATCTTCATCAGTGATTCCATTGAAAACATCAATA
GGCACCTTAACAATCATGTTAGGATATTTCTCAGCAAGGTCTTCAATGCT
GGTTCCTCCCTTGCTGCAACCAATTATTATAGGGCCAGCAGTTTTACGAT
CCAACATGATAGCAAAGTACATCTCATTGACAAGTGACAACTTTTCACAC
AAATAAA
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