CN184501 | Citrus Genome Database

Overview


Name	CN184501
Unique Name	CN184501
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	534

Libraries


Library Name	Type
Ruby Orange Developing Flower cDNA Library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig5171	contig	Csv1_Contig5171:1..524.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CN184501 vs. ExPASy Swiss-Prot
Match: CSN4_ARATH (COP9 signalosome complex subunit 4 OS=Arabidopsis thaliana GN=CSN4 PE=1 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 8.330e-45
Identity = 61/74 (82.43%), Postives = 70/74 (94.59%), Query Frame = 3

Query:  150 MESALASASAITDQRQKIEQYKHILSSVISSNDIVQAKKFIDHMLSDDVPLVVSRQLLQTFAQELGRLEPETQK 371
            M+ AL +ASAI DQRQKIEQYK ILSSV+SSND++QA++FIDH+LSDDVPLVVSRQLLQ+FAQELGRLEPETQK
Sbjct:    1 MDEALTNASAIGDQRQKIEQYKLILSSVLSSNDLLQAQRFIDHILSDDVPLVVSRQLLQSFAQELGRLEPETQK 74

HSP 2 Score: 62.003 bits (149), Expect = 8.330e-45
Identity = 29/36 (80.56%), Postives = 33/36 (91.67%), Query Frame = 2

Query:  425 KNRCLIIREKLADLYESEQQWSKAAQMLSGIDLDSG 532
            + + L+IREKLA LYESEQ+WSKAAQMLSGIDLDSG
Sbjct:   92 EEQALVIREKLAGLYESEQEWSKAAQMLSGIDLDSG 127

HSP 3 Score: 38.1206 bits (87), Expect = 8.330e-45
Identity = 17/22 (77.27%), Postives = 20/22 (90.91%), Query Frame = 1

Query:  367 KREIANYTLAQIQPRVVSFEEQ 432
            ++EIA +TL QIQPRVVSFEEQ
Sbjct:   73 QKEIAQFTLTQIQPRVVSFEEQ 94

[Close]

BLAST of CN184501 vs. ExPASy Swiss-Prot
Match: CSN4_RAT (COP9 signalosome complex subunit 4 OS=Rattus norvegicus GN=Cops4 PE=2 SV=1)

HSP 1 Score: 39.2762 bits (90), Expect = 5.441e-12
Identity = 16/30 (53.33%), Postives = 23/30 (76.67%), Query Frame = 2

Query:  443 IREKLADLYESEQQWSKAAQMLSGIDLDSG 532
            IR++LA +YE E+ W  AAQ+L GI L++G
Sbjct:  106 IRQRLASIYEKEEDWRNAAQVLVGIPLETG 135

HSP 2 Score: 36.1946 bits (82), Expect = 5.441e-12
Identity = 21/58 (36.21%), Postives = 31/58 (53.45%), Query Frame = 3

Query:  207 QYKHILSSVISSNDIVQA---KKFIDHMLSDDVPLVVSRQLLQTFAQELGRLEPETQK 371
            +Y+ IL   I  +   Q    K F++ M++++V LV+SRQLL  F   L  L   T K
Sbjct:   25 KYRQILEKAIQLSGTEQLEALKAFVEAMVNENVSLVISRQLLTDFCTHLPNLPDSTAK 82

HSP 3 Score: 34.2686 bits (77), Expect = 5.441e-12
Identity = 13/22 (59.09%), Postives = 20/22 (90.91%), Query Frame = 1

Query:  370 REIANYTLAQIQPRVVSFEEQV 435
            +E+ ++TL ++QPRV+SFEEQV
Sbjct:   82 KEVYHFTLEKVQPRVISFEEQV 103

[Close]

BLAST of CN184501 vs. ExPASy Swiss-Prot
Match: CSN4_BOVIN (COP9 signalosome complex subunit 4 OS=Bos taurus GN=COPS4 PE=2 SV=1)

HSP 1 Score: 38.1206 bits (87), Expect = 5.441e-12
Identity = 16/30 (53.33%), Postives = 22/30 (73.33%), Query Frame = 2

Query:  443 IREKLADLYESEQQWSKAAQMLSGIDLDSG 532
            IR+ LA +YE E+ W  AAQ+L GI L++G
Sbjct:  106 IRQHLASIYEKEEDWRNAAQVLVGIPLETG 135

HSP 2 Score: 36.5798 bits (83), Expect = 5.441e-12
Identity = 21/58 (36.21%), Postives = 31/58 (53.45%), Query Frame = 3

Query:  207 QYKHILSSVISSNDIVQA---KKFIDHMLSDDVPLVVSRQLLQTFAQELGRLEPETQK 371
            +Y+ IL   I  +   Q    K F++ M++++V LV+SRQLL  F   L  L   T K
Sbjct:   25 KYRQILEKAIQLSGAEQLEALKAFVESMVNENVSLVISRQLLTDFCTHLPNLPDSTAK 82

HSP 3 Score: 35.039 bits (79), Expect = 5.441e-12
Identity = 15/22 (68.18%), Postives = 20/22 (90.91%), Query Frame = 1

Query:  370 REIANYTLAQIQPRVVSFEEQV 435
            +EI ++TL +IQPRV+SFEEQV
Sbjct:   82 KEIYHFTLEKIQPRVISFEEQV 103

[Close]

BLAST of CN184501 vs. ExPASy Swiss-Prot
Match: CSN4_PIG (COP9 signalosome complex subunit 4 OS=Sus scrofa GN=COPS4 PE=2 SV=1)

HSP 1 Score: 38.1206 bits (87), Expect = 7.031e-12
Identity = 16/30 (53.33%), Postives = 22/30 (73.33%), Query Frame = 2

Query:  443 IREKLADLYESEQQWSKAAQMLSGIDLDSG 532
            IR+ LA +YE E+ W  AAQ+L GI L++G
Sbjct:  106 IRQHLASIYEKEEDWRNAAQVLVGIPLETG 135

HSP 2 Score: 36.1946 bits (82), Expect = 7.031e-12
Identity = 21/58 (36.21%), Postives = 31/58 (53.45%), Query Frame = 3

Query:  207 QYKHILSSVISSNDIVQA---KKFIDHMLSDDVPLVVSRQLLQTFAQELGRLEPETQK 371
            +Y+ IL   I  +   Q    K F++ M++++V LV+SRQLL  F   L  L   T K
Sbjct:   25 KYRQILEKAIQLSGAEQLEALKAFVEAMVNENVSLVISRQLLTDFCTHLPNLPDSTAK 82

HSP 3 Score: 35.039 bits (79), Expect = 7.031e-12
Identity = 15/22 (68.18%), Postives = 20/22 (90.91%), Query Frame = 1

Query:  370 REIANYTLAQIQPRVVSFEEQV 435
            +EI ++TL +IQPRV+SFEEQV
Sbjct:   82 KEIYHFTLEKIQPRVISFEEQV 103

[Close]

BLAST of CN184501 vs. ExPASy Swiss-Prot
Match: CSN4_MACFA (COP9 signalosome complex subunit 4 OS=Macaca fascicularis GN=COPS4 PE=2 SV=1)

HSP 1 Score: 38.1206 bits (87), Expect = 7.031e-12
Identity = 16/30 (53.33%), Postives = 22/30 (73.33%), Query Frame = 2

Query:  443 IREKLADLYESEQQWSKAAQMLSGIDLDSG 532
            IR+ LA +YE E+ W  AAQ+L GI L++G
Sbjct:  106 IRQHLASIYEKEEDWRNAAQVLVGIPLETG 135

HSP 2 Score: 36.1946 bits (82), Expect = 7.031e-12
Identity = 21/58 (36.21%), Postives = 31/58 (53.45%), Query Frame = 3

Query:  207 QYKHILSSVISSNDIVQA---KKFIDHMLSDDVPLVVSRQLLQTFAQELGRLEPETQK 371
            +Y+ IL   I  +   Q    K F++ M++++V LV+SRQLL  F   L  L   T K
Sbjct:   25 KYRQILEKAIQLSGAEQLEALKAFVEAMVNENVSLVISRQLLTDFCTHLPNLPDSTAK 82

HSP 3 Score: 35.039 bits (79), Expect = 7.031e-12
Identity = 15/22 (68.18%), Postives = 20/22 (90.91%), Query Frame = 1

Query:  370 REIANYTLAQIQPRVVSFEEQV 435
            +EI ++TL +IQPRV+SFEEQV
Sbjct:   82 KEIYHFTLEKIQPRVISFEEQV 103

[Close]

BLAST of CN184501 vs. ExPASy Swiss-Prot
Match: CSN4_HUMAN (COP9 signalosome complex subunit 4 OS=Homo sapiens GN=COPS4 PE=1 SV=1)

HSP 1 Score: 38.1206 bits (87), Expect = 7.031e-12
Identity = 16/30 (53.33%), Postives = 22/30 (73.33%), Query Frame = 2

Query:  443 IREKLADLYESEQQWSKAAQMLSGIDLDSG 532
            IR+ LA +YE E+ W  AAQ+L GI L++G
Sbjct:  106 IRQHLASIYEKEEDWRNAAQVLVGIPLETG 135

HSP 2 Score: 36.1946 bits (82), Expect = 7.031e-12
Identity = 21/58 (36.21%), Postives = 31/58 (53.45%), Query Frame = 3

Query:  207 QYKHILSSVISSNDIVQA---KKFIDHMLSDDVPLVVSRQLLQTFAQELGRLEPETQK 371
            +Y+ IL   I  +   Q    K F++ M++++V LV+SRQLL  F   L  L   T K
Sbjct:   25 KYRQILEKAIQLSGAEQLEALKAFVEAMVNENVSLVISRQLLTDFCTHLPNLPDSTAK 82

HSP 3 Score: 35.039 bits (79), Expect = 7.031e-12
Identity = 15/22 (68.18%), Postives = 20/22 (90.91%), Query Frame = 1

Query:  370 REIANYTLAQIQPRVVSFEEQV 435
            +EI ++TL +IQPRV+SFEEQV
Sbjct:   82 KEIYHFTLEKIQPRVISFEEQV 103

[Close]

BLAST of CN184501 vs. ExPASy Swiss-Prot
Match: CSN4_MOUSE (COP9 signalosome complex subunit 4 OS=Mus musculus GN=Cops4 PE=1 SV=1)

HSP 1 Score: 38.1206 bits (87), Expect = 9.084e-12
Identity = 16/30 (53.33%), Postives = 22/30 (73.33%), Query Frame = 2

Query:  443 IREKLADLYESEQQWSKAAQMLSGIDLDSG 532
            IR+ LA +YE E+ W  AAQ+L GI L++G
Sbjct:  106 IRQHLASIYEKEEDWRNAAQVLVGIPLETG 135

HSP 2 Score: 36.1946 bits (82), Expect = 9.084e-12
Identity = 21/58 (36.21%), Postives = 31/58 (53.45%), Query Frame = 3

Query:  207 QYKHILSSVISSNDIVQA---KKFIDHMLSDDVPLVVSRQLLQTFAQELGRLEPETQK 371
            +Y+ IL   I  +   Q    K F++ M++++V LV+SRQLL  F   L  L   T K
Sbjct:   25 KYRQILEKAIQLSGTEQLEALKAFVEAMVNENVSLVISRQLLTDFCTHLPNLPDSTAK 82

HSP 3 Score: 34.6538 bits (78), Expect = 9.084e-12
Identity = 14/22 (63.64%), Postives = 20/22 (90.91%), Query Frame = 1

Query:  370 REIANYTLAQIQPRVVSFEEQV 435
            +E+ ++TL +IQPRV+SFEEQV
Sbjct:   82 KEVYHFTLEKIQPRVISFEEQV 103

[Close]

BLAST of CN184501 vs. ExPASy Swiss-Prot
Match: CSN4_PONAB (COP9 signalosome complex subunit 4 OS=Pongo abelii GN=COPS4 PE=2 SV=1)

HSP 1 Score: 37.7354 bits (86), Expect = 9.084e-12
Identity = 15/30 (50.00%), Postives = 22/30 (73.33%), Query Frame = 2

Query:  443 IREKLADLYESEQQWSKAAQMLSGIDLDSG 532
            +R+ LA +YE E+ W  AAQ+L GI L++G
Sbjct:  106 VRQHLASIYEKEEDWRNAAQVLVGIPLETG 135

HSP 2 Score: 36.1946 bits (82), Expect = 9.084e-12
Identity = 21/58 (36.21%), Postives = 31/58 (53.45%), Query Frame = 3

Query:  207 QYKHILSSVISSNDIVQA---KKFIDHMLSDDVPLVVSRQLLQTFAQELGRLEPETQK 371
            +Y+ IL   I  +   Q    K F++ M++++V LV+SRQLL  F   L  L   T K
Sbjct:   25 KYRQILEKAIQLSGAEQLEALKAFVEAMVNENVSLVISRQLLTDFCTHLPNLPDSTAK 82

HSP 3 Score: 35.039 bits (79), Expect = 9.084e-12
Identity = 15/22 (68.18%), Postives = 20/22 (90.91%), Query Frame = 1

Query:  370 REIANYTLAQIQPRVVSFEEQV 435
            +EI ++TL +IQPRV+SFEEQV
Sbjct:   82 KEIYHFTLEKIQPRVISFEEQV 103

[Close]

BLAST of CN184501 vs. ExPASy Swiss-Prot
Match: CSN4_DICDI (COP9 signalosome complex subunit 4 OS=Dictyostelium discoideum GN=csn4 PE=2 SV=1)

HSP 1 Score: 51.9878 bits (123), Expect = 9.099e-12
Identity = 24/73 (32.88%), Postives = 39/73 (53.42%), Query Frame = 3

Query:  150 MESALASASAITDQRQKIEQYKHILSSVISSNDIVQAKKFIDHMLSDDVPLVVSRQLLQTFAQELGRLEPETQ 368
            ++  L   SA++D + K E+YK IL  ++ S  +   K FI H+  +  PLV+SR +L +F      L  + Q
Sbjct:    6 LKQILEETSALSDHKTKTEKYKSILQQLVESKQVAPLKVFITHLTDESTPLVISRTILLSFTSSHKTLPEDIQ 78

HSP 2 Score: 30.8018 bits (68), Expect = 9.099e-12
Identity = 14/29 (48.28%), Postives = 19/29 (65.52%), Query Frame = 2

Query:  443 IREKLADLYESEQQWSKAAQMLSGIDLDS 529
            IR  LA LYE ++ W ++A+ L  I LDS
Sbjct:  103 IRYNLAKLYERQENWRESARCLIAIPLDS 131

HSP 3 Score: 26.1794 bits (56), Expect = 9.099e-12
Identity = 12/21 (57.14%), Postives = 16/21 (76.19%), Query Frame = 1

Query:  373 EIANYTLAQIQPRVVSFEEQV 435
            E+  + L +IQ RVV+FEEQV
Sbjct:   80 ELGIFVLDRIQNRVVAFEEQV 100

[Close]

BLAST of CN184501 vs. ExPASy Swiss-Prot
Match: CSN4_DANRE (COP9 signalosome complex subunit 4 OS=Danio rerio GN=cops4 PE=2 SV=1)

HSP 1 Score: 37.3502 bits (85), Expect = 4.221e-11
Identity = 21/61 (34.43%), Postives = 32/61 (52.46%), Query Frame = 3

Query:  207 QYKHILSSVISSNDIVQA---KKFIDHMLSDDVPLVVSRQLLQTFAQELGRLEPETQKGNC 380
            +Y+ IL   +   D  Q    K F++ M++++V LV+SRQLL  F   L  L  +  K  C
Sbjct:   25 KYRQILEKALQFTDAEQLEALKAFVEAMVNENVSLVISRQLLTDFCAHLPNLPDDIAKVVC 85

HSP 2 Score: 36.5798 bits (83), Expect = 4.221e-11
Identity = 15/30 (50.00%), Postives = 22/30 (73.33%), Query Frame = 2

Query:  443 IREKLADLYESEQQWSKAAQMLSGIDLDSG 532
            IR+ LA +YE ++ W  AAQ+L GI L++G
Sbjct:  106 IRQHLATIYEKQEDWRNAAQVLVGIPLETG 135

HSP 3 Score: 32.7278 bits (73), Expect = 4.221e-11
Identity = 13/20 (65.00%), Postives = 18/20 (90.00%), Query Frame = 1

Query:  376 IANYTLAQIQPRVVSFEEQV 435
            + ++TL +IQPRV+SFEEQV
Sbjct:   84 VCHFTLEKIQPRVISFEEQV 103

The following BLAST results are available for this feature:

BLAST of CN184501 vs. ExPASy Swiss-Prot

BLAST of CN184501 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10


Match Name	E-value	Identity	Description
CSN4_ARATH	8.330e-45	82.43	COP9 signalosome complex subunit 4 OS=Arabidopsis ...	[more]
CSN4_RAT	5.441e-12	53.33	COP9 signalosome complex subunit 4 OS=Rattus norve...	[more]
CSN4_BOVIN	5.441e-12	53.33	COP9 signalosome complex subunit 4 OS=Bos taurus G...	[more]
CSN4_PIG	7.031e-12	53.33	COP9 signalosome complex subunit 4 OS=Sus scrofa G...	[more]
CSN4_MACFA	7.031e-12	53.33	COP9 signalosome complex subunit 4 OS=Macaca fasci...	[more]
CSN4_HUMAN	7.031e-12	53.33	COP9 signalosome complex subunit 4 OS=Homo sapiens...	[more]
CSN4_MOUSE	9.084e-12	53.33	COP9 signalosome complex subunit 4 OS=Mus musculus...	[more]
CSN4_PONAB	9.084e-12	50.00	COP9 signalosome complex subunit 4 OS=Pongo abelii...	[more]
CSN4_DICDI	9.099e-12	32.88	COP9 signalosome complex subunit 4 OS=Dictyosteliu...	[more]
CSN4_DANRE	4.221e-11	34.43	COP9 signalosome complex subunit 4 OS=Danio rerio ...	[more]

Properties


Property Name	Value
Genbank description	UCRCS04_0005J23_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005J23, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CN184501 ID=CN184501; Name=CN184501; organism=Citrus sinensis; type=EST; length=534bp
GGGAAGGTTGATTCACGGTGAGGTGCCTGAGGCTCTGACTCTGAGGGAGC
GAAGGAGGCAAACGCTTCTCCTGATAATTCAGGGGATCAAAATTTTGCAT
ATAACATAAAAAAATTCAACCTAAAATCACAAACACTAATTTAACAATCA
TGGAAAGTGCATTAGCGAGCGCCTCTGCTATCACTGACCAGAGGCAAAAG
ATCGAACAGTATAAGCACATTCTCTCTTCTGTTATCTCTTCAAACGACAT
CGTTCAAGCCAAGAAATTCATCGATCACATGCTATCCGATGATGTACCAT
TGGTTGTTTCGCGTCAGCTGTTGCAGACTTTTGCTCAAGAGCTGGGGAGA
TTAGAACCGGAGACGCAAAAGGGAAATTGCCAATTATACCCTCGCTCAGA
TTCAACCTCGTGTTGTCTCCTTCGAAGAACAGGTGTTTAATTATCAGGGA
GAAACTTGCTGATTTATATGAATCTGAGCAGCAATGGTCAAAAGCAGCTC
AGATGCTTAGTGGAATTGATCTTGACTCTGGAAT