CN184500

Overview
NameCN184500
Unique NameCN184500
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length474
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184500 vs. ExPASy Swiss-Prot
Match: CSN4_ARATH (COP9 signalosome complex subunit 4 OS=Arabidopsis thaliana GN=CSN4 PE=1 SV=2)

HSP 1 Score: 159.844 bits (403), Expect = 5.341e-39
Identity = 79/95 (83.16%), Postives = 85/95 (89.47%), Query Frame = -3
Query:  188 MIEHNLLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFEDDTEELQQWDQQIVGLCQALNDILDSMAKKGLPIPV 472
            MIEHNLLSASKLYTNI F+ELGTLL I P+KAEKIA+ MI +DRMRGSIDQ EAVIHFEDD EELQQWDQQI GLCQALNDILD MAKKG+ +PV
Sbjct:  303 MIEHNLLSASKLYTNIRFDELGTLLAIDPRKAEKIAANMIGQDRMRGSIDQEEAVIHFEDDVEELQQWDQQISGLCQALNDILDGMAKKGMSVPV 397          
BLAST of CN184500 vs. ExPASy Swiss-Prot
Match: CSN4_DICDI (COP9 signalosome complex subunit 4 OS=Dictyostelium discoideum GN=csn4 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.081e-23
Identity = 51/88 (57.95%), Postives = 73/88 (82.95%), Query Frame = -3
Query:  209 MIEHNLLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFEDDTEELQQWDQQIVGLCQALNDILDSMAK 472
            +IEHNLLSASKLY NI+F+ELG+LL I  +KAEK+AS+M+ E+R+ GSIDQ+E +I FE+  + L QWD++I GLC  +N+I++S++K
Sbjct:  300 VIEHNLLSASKLYNNITFDELGSLLEIQAEKAEKVASKMVCEERLIGSIDQIERLIQFENVGDSLTQWDKKIEGLCIHMNNIIESISK 387          
BLAST of CN184500 vs. ExPASy Swiss-Prot
Match: CSN4_DANRE (COP9 signalosome complex subunit 4 OS=Danio rerio GN=cops4 PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 2.663e-22
Identity = 52/88 (59.09%), Postives = 67/88 (76.14%), Query Frame = -3
Query:  209 MIEHNLLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFEDDTEELQQWDQQIVGLCQALNDILDSMAK 472
            +IEHNLLSASKLY NI+FEELG LL I P KAEKIAS+MI E RM G IDQ++ ++HFE   E L  WD+QI  LC  +N++L+ +++
Sbjct:  304 VIEHNLLSASKLYNNITFEELGALLEIPPAKAEKIASQMITEGRMNGFIDQIDGIVHFE-TREPLPTWDKQIQSLCFQVNNLLEKISQ 390          
BLAST of CN184500 vs. ExPASy Swiss-Prot
Match: CSN4_DROME (COP9 signalosome complex subunit 4 OS=Drosophila melanogaster GN=CSN4 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 5.933e-22
Identity = 52/87 (59.77%), Postives = 65/87 (74.71%), Query Frame = -3
Query:  212 MIEHNLLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFEDDTEELQQWDQQIVGLCQALNDILDSMA 472
            + EHNLLSASKLY NI+FEELG LL I   KAEKIAS+MI E RM G IDQ+ A++HFE + E L QWD+QI  LC  +N I++ ++
Sbjct:  311 VFEHNLLSASKLYNNITFEELGALLDIPAVKAEKIASQMITEGRMNGHIDQISAIVHFE-NRELLPQWDRQIQSLCYQVNSIIEKIS 396          
BLAST of CN184500 vs. ExPASy Swiss-Prot
Match: CSN4_RAT (COP9 signalosome complex subunit 4 OS=Rattus norvegicus GN=Cops4 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 2.254e-21
Identity = 51/88 (57.95%), Postives = 66/88 (75.00%), Query Frame = -3
Query:  209 MIEHNLLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFEDDTEELQQWDQQIVGLCQALNDILDSMAK 472
            +IEHNLLSASKLY NI+FEELG LL I   KAEKIAS+MI E RM G IDQ++ ++HFE   E L  WD+QI  LC  +N++L+ +++
Sbjct:  304 VIEHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDGIVHFE-TREALPTWDKQIQSLCFQVNNLLEKISQ 390          
BLAST of CN184500 vs. ExPASy Swiss-Prot
Match: CSN4_PONAB (COP9 signalosome complex subunit 4 OS=Pongo abelii GN=COPS4 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 2.254e-21
Identity = 51/88 (57.95%), Postives = 66/88 (75.00%), Query Frame = -3
Query:  209 MIEHNLLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFEDDTEELQQWDQQIVGLCQALNDILDSMAK 472
            +IEHNLLSASKLY NI+FEELG LL I   KAEKIAS+MI E RM G IDQ++ ++HFE   E L  WD+QI  LC  +N++L+ +++
Sbjct:  304 VIEHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDGIVHFE-TREALPTWDKQIQSLCFQVNNLLEKISQ 390          
BLAST of CN184500 vs. ExPASy Swiss-Prot
Match: CSN4_PIG (COP9 signalosome complex subunit 4 OS=Sus scrofa GN=COPS4 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 2.254e-21
Identity = 51/88 (57.95%), Postives = 66/88 (75.00%), Query Frame = -3
Query:  209 MIEHNLLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFEDDTEELQQWDQQIVGLCQALNDILDSMAK 472
            +IEHNLLSASKLY NI+FEELG LL I   KAEKIAS+MI E RM G IDQ++ ++HFE   E L  WD+QI  LC  +N++L+ +++
Sbjct:  304 VIEHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDGIVHFE-TREALPTWDKQIQSLCFQVNNLLEKISQ 390          
BLAST of CN184500 vs. ExPASy Swiss-Prot
Match: CSN4_MOUSE (COP9 signalosome complex subunit 4 OS=Mus musculus GN=Cops4 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 2.254e-21
Identity = 51/88 (57.95%), Postives = 66/88 (75.00%), Query Frame = -3
Query:  209 MIEHNLLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFEDDTEELQQWDQQIVGLCQALNDILDSMAK 472
            +IEHNLLSASKLY NI+FEELG LL I   KAEKIAS+MI E RM G IDQ++ ++HFE   E L  WD+QI  LC  +N++L+ +++
Sbjct:  304 VIEHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDGIVHFE-TREALPTWDKQIQSLCFQVNNLLEKISQ 390          
BLAST of CN184500 vs. ExPASy Swiss-Prot
Match: CSN4_MACFA (COP9 signalosome complex subunit 4 OS=Macaca fascicularis GN=COPS4 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 2.254e-21
Identity = 51/88 (57.95%), Postives = 66/88 (75.00%), Query Frame = -3
Query:  209 MIEHNLLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFEDDTEELQQWDQQIVGLCQALNDILDSMAK 472
            +IEHNLLSASKLY NI+FEELG LL I   KAEKIAS+MI E RM G IDQ++ ++HFE   E L  WD+QI  LC  +N++L+ +++
Sbjct:  304 VIEHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDGIVHFE-TREALPTWDKQIQSLCFQVNNLLEKISQ 390          
BLAST of CN184500 vs. ExPASy Swiss-Prot
Match: CSN4_HUMAN (COP9 signalosome complex subunit 4 OS=Homo sapiens GN=COPS4 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 2.254e-21
Identity = 51/88 (57.95%), Postives = 66/88 (75.00%), Query Frame = -3
Query:  209 MIEHNLLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFEDDTEELQQWDQQIVGLCQALNDILDSMAK 472
            +IEHNLLSASKLY NI+FEELG LL I   KAEKIAS+MI E RM G IDQ++ ++HFE   E L  WD+QI  LC  +N++L+ +++
Sbjct:  304 VIEHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDGIVHFE-TREALPTWDKQIQSLCFQVNNLLEKISQ 390          
The following BLAST results are available for this feature:
BLAST of CN184500 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
CSN4_ARATH5.341e-3983.16COP9 signalosome complex subunit 4 OS=Arabidopsis ... [more]
CSN4_DICDI1.081e-2357.95COP9 signalosome complex subunit 4 OS=Dictyosteliu... [more]
CSN4_DANRE2.663e-2259.09COP9 signalosome complex subunit 4 OS=Danio rerio ... [more]
CSN4_DROME5.933e-2259.77COP9 signalosome complex subunit 4 OS=Drosophila m... [more]
CSN4_RAT2.254e-2157.95COP9 signalosome complex subunit 4 OS=Rattus norve... [more]
CSN4_PONAB2.254e-2157.95COP9 signalosome complex subunit 4 OS=Pongo abelii... [more]
CSN4_PIG2.254e-2157.95COP9 signalosome complex subunit 4 OS=Sus scrofa G... [more]
CSN4_MOUSE2.254e-2157.95COP9 signalosome complex subunit 4 OS=Mus musculus... [more]
CSN4_MACFA2.254e-2157.95COP9 signalosome complex subunit 4 OS=Macaca fasci... [more]
CSN4_HUMAN2.254e-2157.95COP9 signalosome complex subunit 4 OS=Homo sapiens... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0005J23_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005J23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184500 ID=CN184500; Name=CN184500; organism=Citrus sinensis; type=EST; length=474bp
GAAGCAAAACTATTAGAACTGAGAATGTAAACATACCCCATGCTCGTTGC
TGTCAAAGTACGGCATGCAAAATTCCAATTACAAAATGAGTGATCTTCAC
AAAATTGAAAACGAAACAAAATGCTGAATTGTTTCTATGCATCAACAAAT
CTTTAATTTCTAAAAAGATTGCCAATCGCATAGATCATACAGGAATCGGC
AATCCCTTCTTAGCCATGCTATCTAATATATCATTGAGAGCTTGACAGAG
TCCAACTATCTGTTGATCCCATTGTTGCAGCTCTTCAGTATCATCCTCAA
AATGTATAACAGCTTCCACCTGATCAATGGATCCCCTCATTCTGTCCTCA
AAAATCATTCTTGATGCAATCTTCTCTGCCTTTTGAGGTGCAATACCAAG
CAAAGTGCCCAACTCTTCAAAACTTATGTTGGTGTAAAGTTTGCTTGCGC
TCAAAAGATTATGCTCAATCATGG
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