CN184497

Overview
NameCN184497
Unique NameCN184497
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length549
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2428 contig Csv1_Contig2428:1..549. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CN184497 vs. ExPASy Swiss-Prot
Match: EIF3D_ARATH (Eukaryotic translation initiation factor 3 subunit D OS=Arabidopsis thaliana GN=TIF3D1 PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 6.244e-25
Identity = 73/171 (42.69%), Postives = 92/171 (53.80%), Query Frame = 2 
Query:   86 MVSGEFEIGAVPFNPDGWGPPESTATTTAALPL---------HVPFAPFSRSEKLGRIADWTRNAYNNPSNRQN-ASKNPADTVFDFSA---DDSFPLSA---NPDDDSSFRLVDXXXXXXXXXXXXXXXNQHH-RPQLPQXXXXXXXXXXXXXXXXXXXXXXHYNLNRSN 547
            MV+  FE  AVPFN DGWGPP+++  +++A P          +VPFA FSRS+KLGR+ADWTRN  +NPS R N  SK+    VFDFSA   D+ F L++   NPD+D++FRLVD               N HH R QLPQ                       YN NR+N
Sbjct:    1 MVTEAFEFVAVPFNSDGWGPPDASDVSSSASPTSVAAANLLPNVPFASFSRSDKLGRVADWTRN-LSNPSARPNTGSKSDPSAVFDFSAFAIDEGFGLASSGGNPDEDAAFRLVDGKPPPRPKFGPKWRFNPHHNRNQLPQRRDEEVEAKKRDAEKERARRDRLYNNNRNN 170
The following BLAST results are available for this feature:
BLAST of CN184497 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
EIF3D_ARATH6.244e-2542.69Eukaryotic translation initiation factor 3 subunit... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0005J21_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005J21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184497 ID=CN184497; Name=CN184497; organism=Citrus sinensis; type=EST; length=549bp
GAGGCTCTTTTATCTGATTATATTAACTTCAACTTCAACTTCACCGAAAT
CAAAACCCTAGCTTTTTCACTTCAGTCTAATCACAATGGTGAGCGGCGAA
TTTGAGATCGGAGCCGTTCCATTCAATCCTGACGGCTGGGGCCCACCGGA
ATCAACGGCAACCACAACCGCTGCCCTCCCTCTCCACGTGCCGTTTGCCC
CCTTCTCCCGATCCGAAAAACTTGGTCGGATCGCGGACTGGACCCGCAAC
GCATACAACAATCCATCAAACCGCCAAAACGCTAGCAAAAATCCGGCCGA
CACCGTTTTCGACTTCTCCGCCGACGATTCCTTTCCTCTGTCTGCCAATC
CCGACGACGACTCCTCCTTCCGTCTCGTGGACGGCAAGCCTCCACCGCGT
CCGAAGTTTGGCCCTAAGTGGCGGTTTAATCAGCATCACCGTCCTCAGTT
GCCCCAGCGCCGCGACGAGGAGGTGGAGGCCCGTAAGCGCGAGGCTGAAA
AAGAGCGGGCCCGACGTGACCGCCACTACAACCTCAACCGCTCTAACGT
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