CN184496

Overview
NameCN184496
Unique NameCN184496
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length446
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2428 contig Csv1_Contig2428:302..747. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CN184496 vs. ExPASy Swiss-Prot
Match: EIF3D_ARATH (Eukaryotic translation initiation factor 3 subunit D OS=Arabidopsis thaliana GN=TIF3D1 PE=1 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 7.952e-36
Identity = 84/154 (54.55%), Postives = 99/154 (64.29%), Query Frame = -1 
Query:    3 VFDFSA---DDSSPLSA---NPDDDSSFRLVDXXXXXXXXXXXXXXFNQHH-RPQLPQXXXXXXXXXXXXXXXXXXXXXRHYNLNRSNVNQTRREAAVFKSSVDIQPEWNMLDQIPFSTFSKLSFSVSEPEDLLLCGSLEYYDRSYDRVTPKNE 443
            VFDFSA   D+   L++   NPD+D++FRLVD              FN HH R QLPQ                     R YN NR+N++  RREAA FKSSVDIQPEWNML+QIPFSTFSKLS++V EPEDLLLCG LEYY+R +DR+TPKNE
Sbjct:   83 VFDFSAFAIDEGFGLASSGGNPDEDAAFRLVDGKPPPRPKFGPKWRFNPHHNRNQLPQRRDEEVEAKKRDAEKERARRDRLYNNNRNNIHHQRREAAAFKSSVDIQPEWNMLEQIPFSTFSKLSYTVQEPEDLLLCGGLEYYNRLFDRITPKNE 236
The following BLAST results are available for this feature:
BLAST of CN184496 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
EIF3D_ARATH7.952e-3654.55Eukaryotic translation initiation factor 3 subunit... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0005J21_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005J21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184496 ID=CN184496; Name=CN184496; organism=Citrus sinensis; type=EST; length=446bp
CGTTCATTCTTCGGCGTGACACGATCGTACGACCTGTCGTAGTACTCAAG
GGACCCACACAATAACAAGTCTTCAGGCTCCGATACAGAGAAGGAAAGTT
TTGAAAAAGTTGAGAAGGGAATTTGATCAAGCATGTTCCATTCGGGCTGA
ATGTCGACAGAGGATTTGAAAACTGCAGCTTCACGTCGGGTCTGGTTGAC
GTTAGAGCGGTTGAGGTTGTAGTGGCGGTCACGTCGGGCCCGCTCTTTTT
CAGCCTCGCGCTTACGGGCCTCCACCTCCTCGTCGCGGCGCTGGGGCAAC
TGAGGACGGTGATGCTGATTAAACCGCCACTTAGGGCCAAACTTCGGACG
CGGTGGAGGCTTGCCGTCCACGAGACGGAAGGAGGAGTCGTCGTCGGGAT
TGGCAGACAGAGGAGAGGAATCGTCGGCGGAGAAGTCGAAAACGGT
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