CN184492

Overview
NameCN184492
Unique NameCN184492
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length608
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184492 vs. ExPASy Swiss-Prot
Match: GASA1_ARATH (Gibberellin-regulated protein 1 OS=Arabidopsis thaliana GN=GASA1 PE=1 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 4.768e-22
Identity = 45/76 (59.21%), Postives = 54/76 (71.05%), Query Frame = 1
Query:  175 SDVLDIHKKH-HPQKINCSQACNRRCKESSRKNMCHRACRTCCKRCHCVPPGTYGNKQACPCYASLRTHGNRPKCP 399
            +DV +  KK+ + +KI+C  AC  RC+ S R  +CHRAC TCC RC+CVPPGTYGN   C CYASL THG R KCP
Sbjct:   23 ADVENSQKKNGYAKKIDCGSACVARCRLSRRPRLCHRACGTCCYRCNCVPPGTYGNYDKCQCYASLTTHGGRRKCP 98          
BLAST of CN184492 vs. ExPASy Swiss-Prot
Match: SNAK2_SOLTU (Snakin-2 OS=Solanum tuberosum GN=SN2 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.062e-21
Identity = 41/63 (65.08%), Postives = 49/63 (77.78%), Query Frame = 1
Query:  211 QKINCSQACNRRCKESSRKNMCHRACRTCCKRCHCVPPGTYGNKQACPCYASLRTHGNRPKCP 399
            +KI+C  AC  RC+ SSR  +C+RAC TCC RC+CVPPGT GN + CPCYASL THGN+ KCP
Sbjct:   42 KKIDCGGACAARCRLSSRPRLCNRACGTCCARCNCVPPGTSGNTETCPCYASLTTHGNKRKCP 104          
BLAST of CN184492 vs. ExPASy Swiss-Prot
Match: GASA2_ARATH (Gibberellin-regulated protein 2 OS=Arabidopsis thaliana GN=GASA2 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 9.941e-20
Identity = 38/62 (61.29%), Postives = 44/62 (70.97%), Query Frame = 1
Query:  214 KINCSQACNRRCKESSRKNMCHRACRTCCKRCHCVPPGTYGNKQACPCYASLRTHGNRPKCP 399
            KI+C   C  RC +SSR  +C RAC +CC RC+CVPPGT GN   CPCYAS+ THG R KCP
Sbjct:   38 KIDCGGRCKDRCSKSSRTKLCLRACNSCCSRCNCVPPGTSGNTHLCPCYASITTHGGRLKCP 99          
BLAST of CN184492 vs. ExPASy Swiss-Prot
Match: GASA3_ARATH (Gibberellin-regulated protein 3 OS=Arabidopsis thaliana GN=GASA3 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.893e-19
Identity = 38/62 (61.29%), Postives = 44/62 (70.97%), Query Frame = 1
Query:  214 KINCSQACNRRCKESSRKNMCHRACRTCCKRCHCVPPGTYGNKQACPCYASLRTHGNRPKCP 399
            KI+C   C  RC +SSR N+C RAC +CC RC+CVPPGT GN   CPCYAS+ T G R KCP
Sbjct:   38 KIDCGGRCKGRCSKSSRPNLCLRACNSCCYRCNCVPPGTAGNHHLCPCYASITTRGGRLKCP 99          
BLAST of CN184492 vs. ExPASy Swiss-Prot
Match: GAST1_SOLLC (Protein GAST1 OS=Solanum lycopersicum GN=GAST1 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.645e-15
Identity = 33/65 (50.77%), Postives = 41/65 (63.08%), Query Frame = 1
Query:  205 HPQKINCSQACNRRCKESSRKNMCHRACRTCCKRCHCVPPGTYGNKQACPCYASLRTHGNRPKCP 399
            HPQ  +C   C  RC ++S K  C   C+ CC +C CVP GTYGNKQ+CPCY + +T    PKCP
Sbjct:   50 HPQ--DCQPKCTYRCSKTSYKKPCMFFCQKCCAKCLCVPAGTYGNKQSCPCYNNWKTKRGGPKCP 112          
BLAST of CN184492 vs. ExPASy Swiss-Prot
Match: RSI1_SOLLC (Protein RSI-1 OS=Solanum lycopersicum GN=RSI-1 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.145e-14
Identity = 33/75 (44.00%), Postives = 44/75 (58.67%), Query Frame = 1
Query:  175 SDVLDIHKKHHPQKINCSQACNRRCKESSRKNMCHRACRTCCKRCHCVPPGTYGNKQACPCYASLRTHGNRPKCP 399
            S+V++ + K  P   +C   C  RC  +S K  C   C+ CC  C CVP G YGNKQ+CPCY + +T   +PKCP
Sbjct:   24 SNVVEGYNKLRPT--DCKPRCTYRCSATSHKKPCMFFCQKCCATCLCVPKGVYGNKQSCPCYNNWKTQEGKPKCP 96          
BLAST of CN184492 vs. ExPASy Swiss-Prot
Match: GASA4_ARATH (Gibberellin-regulated protein 4 OS=Arabidopsis thaliana GN=GASA4 PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 2.145e-14
Identity = 33/78 (42.31%), Postives = 45/78 (57.69%), Query Frame = 1
Query:  175 SDVLDIHKKHHP---QKINCSQACNRRCKESSRKNMCHRACRTCCKRCHCVPPGTYGNKQACPCYASLRTHGNRPKCP 399
            S+V    K++ P   ++  C   C+RRCK++     C   C  CC++C CVPPG YGNKQ C CY + +T    PKCP
Sbjct:   29 SNVKWSQKRYGPGSLKRTQCPSECDRRCKKTQYHKACITFCNKCCRKCLCVPPGYYGNKQVCSCYNNWKTQEGGPKCP 106          
BLAST of CN184492 vs. ExPASy Swiss-Prot
Match: SNAK1_SOLTU (Snakin-1 OS=Solanum tuberosum GN=SN1 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 9.965e-12
Identity = 25/59 (42.37%), Postives = 32/59 (54.24%), Query Frame = 1
Query:  223 CSQACNRRCKESSRKNMCHRACRTCCKRCHCVPPGTYGNKQACPCYASLRTHGNRPKCP 399
            C   C  RC ++   + C + C  CC+ C CVP GTYGNK  CPCY   +    + KCP
Sbjct:   30 CDSKCKLRCSKAGLADRCLKYCGICCEECKCVPSGTYGNKHECPCYRDKKNSKGKSKCP 88          
The following BLAST results are available for this feature:
BLAST of CN184492 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
GASA1_ARATH4.768e-2259.21Gibberellin-regulated protein 1 OS=Arabidopsis tha... [more]
SNAK2_SOLTU1.062e-2165.08Snakin-2 OS=Solanum tuberosum GN=SN2 PE=1 SV=1[more]
GASA2_ARATH9.941e-2061.29Gibberellin-regulated protein 2 OS=Arabidopsis tha... [more]
GASA3_ARATH2.893e-1961.29Gibberellin-regulated protein 3 OS=Arabidopsis tha... [more]
GAST1_SOLLC5.645e-1550.77Protein GAST1 OS=Solanum lycopersicum GN=GAST1 PE=... [more]
RSI1_SOLLC2.145e-1444.00Protein RSI-1 OS=Solanum lycopersicum GN=RSI-1 PE=... [more]
GASA4_ARATH2.145e-1442.31Gibberellin-regulated protein 4 OS=Arabidopsis tha... [more]
SNAK1_SOLTU9.965e-1242.37Snakin-1 OS=Solanum tuberosum GN=SN1 PE=1 SV=1[more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0005J18_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005J18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184492 ID=CN184492; Name=CN184492; organism=Citrus sinensis; type=EST; length=608bp
AGGCTCACAATCTCATTGAGCCTTATCATTACCGGCTGCCATTTCCCAGT
TACAATCATGAAGCTCTTTGCGGTTTTCGTGCTCGTAATCCTGTTTCTGC
AGGCACTGGCTGTGGTTGAGGCTTCAACAATGATCAATAATGCTTCTAAC
AACCTTGCTAATAGGGATGGAGCGAGTGATGTGTTAGATATTCACAAAAA
GCATCATCCTCAAAAAATCAATTGCAGTCAAGCTTGCAATAGGAGATGCA
AGGAATCATCAAGAAAAAATATGTGCCATAGAGCATGCAGAACTTGTTGC
AAGAGATGCCACTGTGTTCCCCCAGGCACTTATGGGAACAAGCAGGCATG
CCCTTGTTATGCTAGCCTCAGAACCCATGGAAATAGACCCAAGTGCCCTT
AAATTTTAATTGAATCCAATTGTTCTTATGCTTATAATTCATTTAATGTT
GTGATTTTTATTTGTAATAAAGATCCGGCATGGCTTTAATCTTTTAAAGC
CTAGCTGCGACGGATCCTAAATTTCTTCGTTCTGTCTTCAGTACAATGGT
TGTAAGGATACAATCACAAGTTAATATTGATTTCCATTATAAATATTTCT
TCAATTAC
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