CN184484

Overview
NameCN184484
Unique NameCN184484
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length256
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2614 contig Csv1_Contig2614:142..396. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184484 vs. ExPASy Swiss-Prot
Match: MT3_CARPA (Metallothionein-like protein type 3 OS=Carica papaya PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 1.400e-18
Identity = 27/38 (71.05%), Postives = 33/38 (86.84%), Query Frame = 3
Query:   66 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTV 179
            MSDTCGNCDCAD++QCVKKGSSY AD +ET+ S ++ V
Sbjct:    1 MSDTCGNCDCADKTQCVKKGSSYTADIIETEKSIMTVV 38          

HSP 2 Score: 46.2098 bits (108), Expect = 1.400e-18
Identity = 17/25 (68.00%), Postives = 20/25 (80.00%), Query Frame = 1
Query:  181 VVMDVQAAEAEGNCKCGPTCACVNC 255
            VVMD  AAE +G CKCGP+C+C NC
Sbjct:   37 VVMDAPAAENDGKCKCGPSCSCTNC 61          
BLAST of CN184484 vs. ExPASy Swiss-Prot
Match: MT3_ACTDE (Metallothionein-like protein type 3 OS=Actinidia deliciosa GN=pKIWI503 PE=2 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 1.786e-14
Identity = 26/38 (68.42%), Postives = 29/38 (76.32%), Query Frame = 3
Query:   66 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTV 179
            MSD CGNCDCAD SQCVKKG+S   D VETD S++  V
Sbjct:    1 MSDKCGNCDCADSSQCVKKGNS--IDIVETDKSYIEDV 36          

HSP 2 Score: 42.3578 bits (98), Expect = 1.786e-14
Identity = 17/25 (68.00%), Postives = 19/25 (76.00%), Query Frame = 1
Query:  181 VVMDVQAAEAEGNCKCGPTCACVNC 255
            VVM V AAE+ G CKCG +C CVNC
Sbjct:   36 VVMGVPAAESGGKCKCGTSCPCVNC 60          
BLAST of CN184484 vs. ExPASy Swiss-Prot
Match: MT3_MUSAC (Metallothionein-like protein type 3 OS=Musa acuminata PE=3 SV=1)

HSP 1 Score: 58.9214 bits (141), Expect = 5.097e-14
Identity = 24/35 (68.57%), Postives = 28/35 (80.00%), Query Frame = 3
Query:   75 TCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTV 179
            TCGNCDC D+SQCVKKG+SY  D VET+ S+V  V
Sbjct:    3 TCGNCDCVDKSQCVKKGNSYGIDIVETEKSYVDEV 37          

HSP 2 Score: 38.1206 bits (87), Expect = 5.097e-14
Identity = 13/25 (52.00%), Postives = 18/25 (72.00%), Query Frame = 1
Query:  181 VVMDVQAAEAEGNCKCGPTCACVNC 255
            V++  +AAE +G CKCG  CAC +C
Sbjct:   37 VIVAAEAAEHDGKCKCGAACACTDC 61          
BLAST of CN184484 vs. ExPASy Swiss-Prot
Match: MT3_PRUAV (Metallothionein-like protein 1 OS=Prunus avium GN=MT1 PE=3 SV=1)

HSP 1 Score: 47.3654 bits (111), Expect = 9.099e-13
Identity = 18/25 (72.00%), Postives = 21/25 (84.00%), Query Frame = 1
Query:  181 VVMDVQAAEAEGNCKCGPTCACVNC 255
            V+MD  AAE  GNCKCGP+CACV+C
Sbjct:   38 VIMDAPAAENGGNCKCGPSCACVDC 62          

HSP 2 Score: 45.4394 bits (106), Expect = 9.099e-13
Identity = 20/38 (52.63%), Postives = 24/38 (63.16%), Query Frame = 3
Query:   66 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTV 179
            MS  C NCDC+D SQC KKG S+    VET+   + TV
Sbjct:    1 MSSKCSNCDCSDSSQCTKKGYSFDLVIVETENRSMDTV 38          
BLAST of CN184484 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSJ (Metallothionein-like protein 3A OS=Oryza sativa subsp. japonica GN=MT3A PE=2 SV=1)

HSP 1 Score: 55.4546 bits (132), Expect = 7.386e-12
Identity = 24/38 (63.16%), Postives = 27/38 (71.05%), Query Frame = 3
Query:   66 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTV 179
            MSD CGNCDCAD+SQCVKKG+SY    VE + S    V
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFEEV 38          

HSP 2 Score: 34.2686 bits (77), Expect = 7.386e-12
Identity = 11/22 (50.00%), Postives = 15/22 (68.18%), Query Frame = 1
Query:  190 DVQAAEAEGNCKCGPTCACVNC 255
            +V A E  G CKCG +C+C +C
Sbjct:   37 EVAAGEENGGCKCGTSCSCTDC 58          
BLAST of CN184484 vs. ExPASy Swiss-Prot
Match: MT3A_ORYSI (Metallothionein-like protein 3A OS=Oryza sativa subsp. indica GN=MT3A PE=3 SV=1)

HSP 1 Score: 55.4546 bits (132), Expect = 7.386e-12
Identity = 24/38 (63.16%), Postives = 27/38 (71.05%), Query Frame = 3
Query:   66 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTV 179
            MSD CGNCDCAD+SQCVKKG+SY    VE + S    V
Sbjct:    1 MSDKCGNCDCADKSQCVKKGTSYGVVIVEAEKSHFEEV 38          

HSP 2 Score: 34.2686 bits (77), Expect = 7.386e-12
Identity = 11/22 (50.00%), Postives = 15/22 (68.18%), Query Frame = 1
Query:  190 DVQAAEAEGNCKCGPTCACVNC 255
            +V A E  G CKCG +C+C +C
Sbjct:   37 EVAAGEENGGCKCGTSCSCTDC 58          
BLAST of CN184484 vs. ExPASy Swiss-Prot
Match: MT3_MALDO (Metallothionein-like protein type 3 OS=Malus domestica GN=MT2 PE=3 SV=1)

HSP 1 Score: 48.9062 bits (115), Expect = 4.608e-11
Identity = 22/38 (57.89%), Postives = 26/38 (68.42%), Query Frame = 3
Query:   66 MSDTCGNCDCADRSQCVKKGSSYAADFVETDLSFVSTV 179
            MS  C NCDCAD +QCVKKG+SY    VET+   + TV
Sbjct:    1 MSGKCDNCDCADSTQCVKKGNSYDLVIVETENRSMDTV 38          

HSP 2 Score: 38.1206 bits (87), Expect = 4.608e-11
Identity = 14/25 (56.00%), Postives = 18/25 (72.00%), Query Frame = 1
Query:  181 VVMDVQAAEAEGNCKCGPTCACVNC 255
            V +D  AAE +G CKCG  C+CV+C
Sbjct:   38 VFVDAPAAEHDGKCKCGTGCSCVSC 62          
The following BLAST results are available for this feature:
BLAST of CN184484 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
MT3_CARPA1.400e-1871.05Metallothionein-like protein type 3 OS=Carica papa... [more]
MT3_ACTDE1.786e-1468.42Metallothionein-like protein type 3 OS=Actinidia d... [more]
MT3_MUSAC5.097e-1468.57Metallothionein-like protein type 3 OS=Musa acumin... [more]
MT3_PRUAV9.099e-1372.00Metallothionein-like protein 1 OS=Prunus avium GN=... [more]
MT3A_ORYSJ7.386e-1263.16Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3A_ORYSI7.386e-1263.16Metallothionein-like protein 3A OS=Oryza sativa su... [more]
MT3_MALDO4.608e-1157.89Metallothionein-like protein type 3 OS=Malus domes... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0005J11_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005J11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184484 ID=CN184484; Name=CN184484; organism=Citrus sinensis; type=EST; length=256bp
GGGTTTCGTACAATAAAGAGCCCTCTATTTCCAGTTTTAAGTTCTAAGTT
CTAAGCTCAATCAACATGTCGGACACCTGCGGCAACTGCGACTGCGCTGA
CAGGAGCCAGTGTGTGAAGAAGGGAAGCAGCTATGCTGCTGACTTCGTCG
AGACTGACTTGAGCTTTGTCAGCACCGTTTGTTGTCATGGACGTTCAGGC
TGCTGAGGCTGAAGGTAACTGCAAGTGCGGCCCCACCTGCGCTTGTGTGA
ACTGCA
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