CN184482

Overview
NameCN184482
Unique NameCN184482
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length574
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN184482 vs. ExPASy Swiss-Prot
Match: U2A2A_NICPL (Splicing factor U2af large subunit A OS=Nicotiana plumbaginifolia GN=U2AF65A PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.697e-22
Identity = 48/108 (44.44%), Postives = 58/108 (53.70%), Query Frame = -2
Query:  250 LAQAQQHIAIQKMALQTSGMNTLGGGMSFFGETLAKVLCLTEAITXXXXXXXXXXXXXXXAMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKR 573
            L  AQQ IA+Q+  LQ   + T             KVLCLTE +T                MR EC K+G LVNVVIPRP+ NG  TPG+GKVFLEY D  G + A++
Sbjct:  432 LLHAQQQIALQRFMLQPGALAT-------------KVLCLTEVVTVDELNDDDDYQDILEDMRTECEKFGALVNVVIPRPNPNGVPTPGLGKVFLEYADVDGSSKARQ 526          

HSP 2 Score: 40.4318 bits (93), Expect = 3.697e-22
Identity = 17/31 (54.84%), Postives = 22/31 (70.97%), Query Frame = -3
Query:  165 QNALSGRKFGGNTVNAFYYPEDKYFNKDYSA 257
            +  L+GRKFGGN V A +YPE+K+   DY A
Sbjct:  525 RQGLNGRKFGGNQVVAVFYPENKFSEGDYEA 555          
BLAST of CN184482 vs. ExPASy Swiss-Prot
Match: U2A2B_NICPL (Splicing factor U2af large subunit B OS=Nicotiana plumbaginifolia GN=U2AF65B PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.058e-21
Identity = 48/108 (44.44%), Postives = 59/108 (54.63%), Query Frame = -2
Query:  250 LAQAQQHIAIQKMALQTSGMNTLGGGMSFFGETLAKVLCLTEAITXXXXXXXXXXXXXXXAMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKR 573
            L  AQQ IA+Q++ LQ + + T             KVL LTE I+                MR ECGK+G+LVNVVIPRP  NG  TPGVGKVFLEY D    + A++
Sbjct:  450 LLHAQQQIALQRLMLQPATLAT-------------KVLSLTEVISADELNDDEDYQDILEDMRTECGKFGSLVNVVIPRPSPNGEPTPGVGKVFLEYADVDSSSKARQ 544          

HSP 2 Score: 41.2022 bits (95), Expect = 1.058e-21
Identity = 16/29 (55.17%), Postives = 23/29 (79.31%), Query Frame = -3
Query:  171 QNALSGRKFGGNTVNAFYYPEDKYFNKDY 257
            + +L+GRKFGGN V A +YPE+K++  DY
Sbjct:  543 RQSLNGRKFGGNQVVAVFYPENKFYEGDY 571          
BLAST of CN184482 vs. ExPASy Swiss-Prot
Match: U2A2B_ARATH (Splicing factor U2af large subunit B OS=Arabidopsis thaliana GN=U2AF65B PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 3.941e-21
Identity = 44/107 (41.12%), Postives = 57/107 (53.27%), Query Frame = -2
Query:  253 LAQAQQHIAIQKMALQTSGMNTLGGGMSFFGETLAKVLCLTEAITXXXXXXXXXXXXXXXAMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAK 573
            L  AQQ IA+Q++  Q  G  T             K++CLT+ +T                MR+E GK+G LVNVVIPRP+ +   TPGVGKVFLEY D  G + A+
Sbjct:  466 LLYAQQQIALQRLMFQPGGTPT-------------KIVCLTQVVTADDLRDDEEYAEIMEDMRQEGGKFGNLVNVVIPRPNPDHDPTPGVGKVFLEYADVDGSSKAR 559          

HSP 2 Score: 43.5134 bits (101), Expect = 3.941e-21
Identity = 18/29 (62.07%), Postives = 22/29 (75.86%), Query Frame = -3
Query:  171 QNALSGRKFGGNTVNAFYYPEDKYFNKDY 257
            ++ ++GRKFGGN V A YYPEDKY   DY
Sbjct:  559 RSGMNGRKFGGNQVVAVYYPEDKYAQGDY 587          
BLAST of CN184482 vs. ExPASy Swiss-Prot
Match: U2A2B_WHEAT (Splicing factor U2af large subunit B OS=Triticum aestivum GN=U2AF65B PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 9.252e-20
Identity = 44/107 (41.12%), Postives = 52/107 (48.60%), Query Frame = -2
Query:  253 LAQAQQHIAIQKMALQTSGMNTLGGGMSFFGETLAKVLCLTEAITXXXXXXXXXXXXXXXAMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAK 573
            L QAQQ + +QK+  Q   + T             KV+CLT+ +T                MR E GKYG LV VVIPRP  +G    GVGKVFLEY D  G   AK
Sbjct:  418 LLQAQQQVQLQKLVYQVGALPT-------------KVVCLTQVVTADELKDDEEYEDIMEDMRLEAGKYGNLVKVVIPRPHPSGEPVSGVGKVFLEYADVDGSTKAK 511          

HSP 2 Score: 41.9726 bits (97), Expect = 9.252e-20
Identity = 17/31 (54.84%), Postives = 24/31 (77.42%), Query Frame = -3
Query:  165 QNALSGRKFGGNTVNAFYYPEDKYFNKDYSA 257
            + A+ GRKFGGN V A +YPE+K+ ++DY A
Sbjct:  511 KTAMHGRKFGGNPVVAVFYPENKFADEDYDA 541          
BLAST of CN184482 vs. ExPASy Swiss-Prot
Match: U2A2B_ORYSJ (Splicing factor U2af large subunit B OS=Oryza sativa subsp. japonica GN=U2AF65B PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 3.441e-19
Identity = 43/107 (40.19%), Postives = 53/107 (49.53%), Query Frame = -2
Query:  253 LAQAQQHIAIQKMALQTSGMNTLGGGMSFFGETLAKVLCLTEAITXXXXXXXXXXXXXXXAMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAK 573
            L QAQQ + +QK+  Q   + T             KV+CLT+ ++                MR E GKYG L+ VVIPRPD +G    GVGKVFLEY D  G   AK
Sbjct:  425 LLQAQQQVQLQKLVYQVGALPT-------------KVVCLTQVVSADELKDDEEYEDIMEDMRLEAGKYGNLIKVVIPRPDPSGLPVAGVGKVFLEYADVDGATKAK 518          

HSP 2 Score: 39.6614 bits (91), Expect = 3.441e-19
Identity = 16/31 (51.61%), Postives = 23/31 (74.19%), Query Frame = -3
Query:  165 QNALSGRKFGGNTVNAFYYPEDKYFNKDYSA 257
            + A+ GRKFGGN V A +YPE+K+ + +Y A
Sbjct:  518 KTAMHGRKFGGNPVVAVFYPENKFSSAEYDA 548          
BLAST of CN184482 vs. ExPASy Swiss-Prot
Match: U2A2A_ARATH (Splicing factor U2af large subunit A OS=Arabidopsis thaliana GN=U2AF65A PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 2.161e-18
Identity = 41/107 (38.32%), Postives = 52/107 (48.60%), Query Frame = -2
Query:  253 LAQAQQHIAIQKMALQTSGMNTLGGGMSFFGETLAKVLCLTEAITXXXXXXXXXXXXXXXAMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAK 573
            L  AQQ IA Q++ LQ   + T              V+CLT+ +T                MR+E GK+G L NVVIPRP  NG    G+GKVFL+Y D  G   A+
Sbjct:  450 LLHAQQQIAFQRVMLQPGAVATT-------------VVCLTQVVTEDELRDDEEYGDIMEDMRQEGGKFGALTNVVIPRPSPNGEPVAGLGKVFLKYADTDGSTRAR 543          

HSP 2 Score: 42.3578 bits (98), Expect = 2.161e-18
Identity = 18/28 (64.29%), Postives = 21/28 (75.00%), Query Frame = -3
Query:  165 LSGRKFGGNTVNAFYYPEDKYFNKDYSA 248
            ++GRKFGGN V A YYPEDK+   DY A
Sbjct:  546 MNGRKFGGNEVVAVYYPEDKFEQGDYGA 573          
BLAST of CN184482 vs. ExPASy Swiss-Prot
Match: U2A2A_ORYSJ (Splicing factor U2af large subunit A OS=Oryza sativa subsp. japonica GN=U2AF65A PE=2 SV=2)

HSP 1 Score: 65.4698 bits (158), Expect = 7.328e-15
Identity = 39/107 (36.45%), Postives = 49/107 (45.79%), Query Frame = -2
Query:  253 LAQAQQHIAIQKMALQTSGMNTLGGGMSFFGETLAKVLCLTEAITXXXXXXXXXXXXXXXAMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAK 573
            L   QQ   +QK+  Q  G           G    KV+CLT+ ++                MREE  +YG LV VVIPRPD +G    GVG+VFLE+ D      AK
Sbjct:  449 LLHVQQQAQMQKLMFQVGG-----------GALPTKVVCLTQVVSPDELRDDEEYEDIVQDMREEGCRYGNLVKVVIPRPDPSGAPVAGVGRVFLEFADVESSTKAK 544          

HSP 2 Score: 34.6538 bits (78), Expect = 7.328e-15
Identity = 14/29 (48.28%), Postives = 18/29 (62.07%), Query Frame = -3
Query:  171 QNALSGRKFGGNTVNAFYYPEDKYFNKDY 257
            +N + GRKF  N V A +YPEDK+    Y
Sbjct:  544 KNGMHGRKFANNQVVAVFYPEDKFAEGQY 572          
The following BLAST results are available for this feature:
BLAST of CN184482 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
U2A2A_NICPL3.697e-2244.44Splicing factor U2af large subunit A OS=Nicotiana ... [more]
U2A2B_NICPL1.058e-2144.44Splicing factor U2af large subunit B OS=Nicotiana ... [more]
U2A2B_ARATH3.941e-2141.12Splicing factor U2af large subunit B OS=Arabidopsi... [more]
U2A2B_WHEAT9.252e-2041.12Splicing factor U2af large subunit B OS=Triticum a... [more]
U2A2B_ORYSJ3.441e-1940.19Splicing factor U2af large subunit B OS=Oryza sati... [more]
U2A2A_ARATH2.161e-1838.32Splicing factor U2af large subunit A OS=Arabidopsi... [more]
U2A2A_ORYSJ7.328e-1536.45Splicing factor U2af large subunit A OS=Oryza sati... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0005J10_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005J10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184482 ID=CN184482; Name=CN184482; organism=Citrus sinensis; type=EST; length=574bp
CTAGTCTCGCCTTTTATTTTTTTTTTTTTTTGACTTAAAAGCACCTATAA
ACATAATTATTCGGTAAATCATTACATGTTACACAACTGACTGAAAACTA
TACATTGTAAACTTTTATTATAAAAATAATTTTTTTGGGGGTGGGGGGGG
GGAAGCCTACTTCAGGCACTATAGTCTTTGTTGAAGTATTTGTCTTCCGG
GTAATAGAAGGCATTCACCGTATTGCCTCCAAATTTCCTGCCACTTAGGG
CGTTTTGCAGTGGCACAACCAACAGCGTCATAATACTCCAAGAACACCTT
TCCAACTCCAGGCGTCTCTCCTCCATTTTGATCTGGCCGAGGAATAACAA
CATTCACCAGAGTTCCATATTTACCGCATTCTTCCCTCATGGCTTCTAAT
ATTTCTTCATACTCTTCATCATCTGCAAGTGCATCGGCAGTAATTGCCTC
AGTCAAGCATAAAACTTTAGCTAGAGTTTCTCCAAAAAAAGACATTCCTC
CTCCGAGAGTATTCATGCCACTAGTTTGTAAGGCCATTTTCTGGATAGCT
ATATGCTGTTGAGCCTGGGCTAAT
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