CN184482
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN184482 vs. ExPASy Swiss-Prot
Match: U2A2A_NICPL (Splicing factor U2af large subunit A OS=Nicotiana plumbaginifolia GN=U2AF65A PE=2 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 3.697e-22 Identity = 48/108 (44.44%), Postives = 58/108 (53.70%), Query Frame = -2 Query: 250 LAQAQQHIAIQKMALQTSGMNTLGGGMSFFGETLAKVLCLTEAITXXXXXXXXXXXXXXXAMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKR 573 L AQQ IA+Q+ LQ + T KVLCLTE +T MR EC K+G LVNVVIPRP+ NG TPG+GKVFLEY D G + A++ Sbjct: 432 LLHAQQQIALQRFMLQPGALAT-------------KVLCLTEVVTVDELNDDDDYQDILEDMRTECEKFGALVNVVIPRPNPNGVPTPGLGKVFLEYADVDGSSKARQ 526 HSP 2 Score: 40.4318 bits (93), Expect = 3.697e-22 Identity = 17/31 (54.84%), Postives = 22/31 (70.97%), Query Frame = -3 Query: 165 QNALSGRKFGGNTVNAFYYPEDKYFNKDYSA 257 + L+GRKFGGN V A +YPE+K+ DY A Sbjct: 525 RQGLNGRKFGGNQVVAVFYPENKFSEGDYEA 555
BLAST of CN184482 vs. ExPASy Swiss-Prot
Match: U2A2B_NICPL (Splicing factor U2af large subunit B OS=Nicotiana plumbaginifolia GN=U2AF65B PE=2 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 1.058e-21 Identity = 48/108 (44.44%), Postives = 59/108 (54.63%), Query Frame = -2 Query: 250 LAQAQQHIAIQKMALQTSGMNTLGGGMSFFGETLAKVLCLTEAITXXXXXXXXXXXXXXXAMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAKR 573 L AQQ IA+Q++ LQ + + T KVL LTE I+ MR ECGK+G+LVNVVIPRP NG TPGVGKVFLEY D + A++ Sbjct: 450 LLHAQQQIALQRLMLQPATLAT-------------KVLSLTEVISADELNDDEDYQDILEDMRTECGKFGSLVNVVIPRPSPNGEPTPGVGKVFLEYADVDSSSKARQ 544 HSP 2 Score: 41.2022 bits (95), Expect = 1.058e-21 Identity = 16/29 (55.17%), Postives = 23/29 (79.31%), Query Frame = -3 Query: 171 QNALSGRKFGGNTVNAFYYPEDKYFNKDY 257 + +L+GRKFGGN V A +YPE+K++ DY Sbjct: 543 RQSLNGRKFGGNQVVAVFYPENKFYEGDY 571
BLAST of CN184482 vs. ExPASy Swiss-Prot
Match: U2A2B_ARATH (Splicing factor U2af large subunit B OS=Arabidopsis thaliana GN=U2AF65B PE=2 SV=2) HSP 1 Score: 77.7962 bits (190), Expect = 3.941e-21 Identity = 44/107 (41.12%), Postives = 57/107 (53.27%), Query Frame = -2 Query: 253 LAQAQQHIAIQKMALQTSGMNTLGGGMSFFGETLAKVLCLTEAITXXXXXXXXXXXXXXXAMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAK 573 L AQQ IA+Q++ Q G T K++CLT+ +T MR+E GK+G LVNVVIPRP+ + TPGVGKVFLEY D G + A+ Sbjct: 466 LLYAQQQIALQRLMFQPGGTPT-------------KIVCLTQVVTADDLRDDEEYAEIMEDMRQEGGKFGNLVNVVIPRPNPDHDPTPGVGKVFLEYADVDGSSKAR 559 HSP 2 Score: 43.5134 bits (101), Expect = 3.941e-21 Identity = 18/29 (62.07%), Postives = 22/29 (75.86%), Query Frame = -3 Query: 171 QNALSGRKFGGNTVNAFYYPEDKYFNKDY 257 ++ ++GRKFGGN V A YYPEDKY DY Sbjct: 559 RSGMNGRKFGGNQVVAVYYPEDKYAQGDY 587
BLAST of CN184482 vs. ExPASy Swiss-Prot
Match: U2A2B_WHEAT (Splicing factor U2af large subunit B OS=Triticum aestivum GN=U2AF65B PE=2 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 9.252e-20 Identity = 44/107 (41.12%), Postives = 52/107 (48.60%), Query Frame = -2 Query: 253 LAQAQQHIAIQKMALQTSGMNTLGGGMSFFGETLAKVLCLTEAITXXXXXXXXXXXXXXXAMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAK 573 L QAQQ + +QK+ Q + T KV+CLT+ +T MR E GKYG LV VVIPRP +G GVGKVFLEY D G AK Sbjct: 418 LLQAQQQVQLQKLVYQVGALPT-------------KVVCLTQVVTADELKDDEEYEDIMEDMRLEAGKYGNLVKVVIPRPHPSGEPVSGVGKVFLEYADVDGSTKAK 511 HSP 2 Score: 41.9726 bits (97), Expect = 9.252e-20 Identity = 17/31 (54.84%), Postives = 24/31 (77.42%), Query Frame = -3 Query: 165 QNALSGRKFGGNTVNAFYYPEDKYFNKDYSA 257 + A+ GRKFGGN V A +YPE+K+ ++DY A Sbjct: 511 KTAMHGRKFGGNPVVAVFYPENKFADEDYDA 541
BLAST of CN184482 vs. ExPASy Swiss-Prot
Match: U2A2B_ORYSJ (Splicing factor U2af large subunit B OS=Oryza sativa subsp. japonica GN=U2AF65B PE=2 SV=2) HSP 1 Score: 75.0998 bits (183), Expect = 3.441e-19 Identity = 43/107 (40.19%), Postives = 53/107 (49.53%), Query Frame = -2 Query: 253 LAQAQQHIAIQKMALQTSGMNTLGGGMSFFGETLAKVLCLTEAITXXXXXXXXXXXXXXXAMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAK 573 L QAQQ + +QK+ Q + T KV+CLT+ ++ MR E GKYG L+ VVIPRPD +G GVGKVFLEY D G AK Sbjct: 425 LLQAQQQVQLQKLVYQVGALPT-------------KVVCLTQVVSADELKDDEEYEDIMEDMRLEAGKYGNLIKVVIPRPDPSGLPVAGVGKVFLEYADVDGATKAK 518 HSP 2 Score: 39.6614 bits (91), Expect = 3.441e-19 Identity = 16/31 (51.61%), Postives = 23/31 (74.19%), Query Frame = -3 Query: 165 QNALSGRKFGGNTVNAFYYPEDKYFNKDYSA 257 + A+ GRKFGGN V A +YPE+K+ + +Y A Sbjct: 518 KTAMHGRKFGGNPVVAVFYPENKFSSAEYDA 548
BLAST of CN184482 vs. ExPASy Swiss-Prot
Match: U2A2A_ARATH (Splicing factor U2af large subunit A OS=Arabidopsis thaliana GN=U2AF65A PE=2 SV=2) HSP 1 Score: 69.707 bits (169), Expect = 2.161e-18 Identity = 41/107 (38.32%), Postives = 52/107 (48.60%), Query Frame = -2 Query: 253 LAQAQQHIAIQKMALQTSGMNTLGGGMSFFGETLAKVLCLTEAITXXXXXXXXXXXXXXXAMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAK 573 L AQQ IA Q++ LQ + T V+CLT+ +T MR+E GK+G L NVVIPRP NG G+GKVFL+Y D G A+ Sbjct: 450 LLHAQQQIAFQRVMLQPGAVATT-------------VVCLTQVVTEDELRDDEEYGDIMEDMRQEGGKFGALTNVVIPRPSPNGEPVAGLGKVFLKYADTDGSTRAR 543 HSP 2 Score: 42.3578 bits (98), Expect = 2.161e-18 Identity = 18/28 (64.29%), Postives = 21/28 (75.00%), Query Frame = -3 Query: 165 LSGRKFGGNTVNAFYYPEDKYFNKDYSA 248 ++GRKFGGN V A YYPEDK+ DY A Sbjct: 546 MNGRKFGGNEVVAVYYPEDKFEQGDYGA 573
BLAST of CN184482 vs. ExPASy Swiss-Prot
Match: U2A2A_ORYSJ (Splicing factor U2af large subunit A OS=Oryza sativa subsp. japonica GN=U2AF65A PE=2 SV=2) HSP 1 Score: 65.4698 bits (158), Expect = 7.328e-15 Identity = 39/107 (36.45%), Postives = 49/107 (45.79%), Query Frame = -2 Query: 253 LAQAQQHIAIQKMALQTSGMNTLGGGMSFFGETLAKVLCLTEAITXXXXXXXXXXXXXXXAMREECGKYGTLVNVVIPRPDQNGGETPGVGKVFLEYYDAVGCATAK 573 L QQ +QK+ Q G G KV+CLT+ ++ MREE +YG LV VVIPRPD +G GVG+VFLE+ D AK Sbjct: 449 LLHVQQQAQMQKLMFQVGG-----------GALPTKVVCLTQVVSPDELRDDEEYEDIVQDMREEGCRYGNLVKVVIPRPDPSGAPVAGVGRVFLEFADVESSTKAK 544 HSP 2 Score: 34.6538 bits (78), Expect = 7.328e-15 Identity = 14/29 (48.28%), Postives = 18/29 (62.07%), Query Frame = -3 Query: 171 QNALSGRKFGGNTVNAFYYPEDKYFNKDY 257 +N + GRKF N V A +YPEDK+ Y Sbjct: 544 KNGMHGRKFANNQVVAVFYPEDKFAEGQY 572 The following BLAST results are available for this feature:
BLAST of CN184482 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 7
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CN184482 ID=CN184482; Name=CN184482; organism=Citrus sinensis; type=EST; length=574bpback to top |