CN184480

Overview
NameCN184480
Unique NameCN184480
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length496
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2627 contig Csv1_Contig2627:170..665. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184480 vs. ExPASy Swiss-Prot
Match: SKIP2_ARATH (F-box protein SKIP2 OS=Arabidopsis thaliana GN=SKIP2 PE=1 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.105e-40
Identity = 86/139 (61.87%), Postives = 107/139 (76.98%), Query Frame = 1
Query:   91 MGQTPSTAIDPSDR---FNILSPAIVYN-DGVEFSDELDKARDFTGDLPDDCLAYIFQFLGSGDRKRCSLVCKRWLRVDGGSRYRLSLNAQSEILSSLPSVFSRFDSVTKLALRCDRKSISLDDDALVLISLRCQKLTR 495
            MGQ PS+  + + R     + SP IV   + +   + +D  RDFTGDLPD+CLA++FQFLG+GDRKRCSLVCKRWL VDG SR+RLSL+A+ EI S L S+F+RFDSVTKLALRCDRKS+SL D+AL +IS+RC  LTR
Sbjct:    1 MGQAPSSTAESNGRELDLRLWSPVIVAGGESMAVGNVVD--RDFTGDLPDECLAHVFQFLGAGDRKRCSLVCKRWLLVDGQSRHRLSLDAKDEISSFLTSMFNRFDSVTKLALRCDRKSVSLSDEALAMISVRCLNLTR 137          
BLAST of CN184480 vs. ExPASy Swiss-Prot
Match: FBL16_ARATH (F-box/LRR-repeat protein 16 OS=Arabidopsis thaliana GN=FBL16 PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 1.144e-37
Identity = 81/138 (58.70%), Postives = 101/138 (73.19%), Query Frame = 1
Query:   91 MGQTPSTAIDPSDRFNIL---SPAIVYNDGVEFSDELDKARDFTGDLPDDCLAYIFQFLGSGDRKRCSLVCKRWLRVDGGSRYRLSLNAQSEILSSLPSVFSRFDSVTKLALRCDRKSISLDDDALVLISLRCQKLTR 495
            MGQ PS+  +P+ R   L   SP  +  + + F D      DFT +LPDDCLA+IFQFL +GDRKRCSLV KRWL VDG +R+RLSL+A+SEIL  LP +F+RFDSVTKLALRCDR+S SL D+AL ++S+RC  L R
Sbjct:    1 MGQAPSSPAEPNVRDTSLCLWSPEFLDCESIGFEDG---DYDFTANLPDDCLAHIFQFLSAGDRKRCSLVSKRWLLVDGQNRHRLSLDAKSEILPFLPCIFNRFDSVTKLALRCDRRSFSLSDEALFIVSIRCSNLIR 135          
BLAST of CN184480 vs. ExPASy Swiss-Prot
Match: FB37_ARATH (F-box protein At1g47056 OS=Arabidopsis thaliana GN=At1g47056 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 4.497e-34
Identity = 63/97 (64.95%), Postives = 87/97 (89.69%), Query Frame = 1
Query:  205 DFTGDLPDDCLAYIFQFLGSGDRKRCSLVCKRWLRVDGGSRYRLSLNAQSEILSSLPSVFSRFDSVTKLALRCDRKSISLDDDALVLISLRCQKLTR 495
            D+T  LPD+CLA +FQFL SG+RKRC+LVC+RW+ V+G +RYRLSL+A+S++++S+PS+FSRFDSVTKL+L+CDR+S+S+ D+ALV ISLRC+ L R
Sbjct:   38 DYTSSLPDECLALVFQFLNSGNRKRCALVCRRWMIVEGQNRYRLSLHARSDLITSIPSLFSRFDSVTKLSLKCDRRSVSIGDEALVKISLRCRNLKR 134          
BLAST of CN184480 vs. ExPASy Swiss-Prot
Match: FBL8_ARATH (Putative F-box/LRR-repeat protein 8 OS=Arabidopsis thaliana GN=FBL8 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 4.356e-29
Identity = 58/101 (57.43%), Postives = 80/101 (79.21%), Query Frame = 1
Query:  193 DKARDFTGDLPDDCLAYIFQFLGSGDRKRCSLVCKRWLRVDGGSRYRLSLNAQSEILSSLPSVFSRFDSVTKLALRCDRKSISLDDDALVLISLRCQKLTR 495
            D+  D+  +LPD+CL+ IFQ L   D KRCSLVC+RWL ++G  R+RLSL AQS+++S +PS+F+RFDSVTKL LR DR+S+ + D+A V+IS+RC+ LTR
Sbjct:   68 DEPYDYISNLPDECLSLIFQSLTCADLKRCSLVCRRWLTIEGQCRHRLSLKAQSDLISVIPSLFTRFDSVTKLVLRSDRRSLGICDNAFVMISVRCRNLTR 168          
The following BLAST results are available for this feature:
BLAST of CN184480 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
SKIP2_ARATH1.105e-4061.87F-box protein SKIP2 OS=Arabidopsis thaliana GN=SKI... [more]
FBL16_ARATH1.144e-3758.70F-box/LRR-repeat protein 16 OS=Arabidopsis thalian... [more]
FB37_ARATH4.497e-3464.95F-box protein At1g47056 OS=Arabidopsis thaliana GN... [more]
FBL8_ARATH4.356e-2957.43Putative F-box/LRR-repeat protein 8 OS=Arabidopsis... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS04_0005J07_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005J07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184480 ID=CN184480; Name=CN184480; organism=Citrus sinensis; type=EST; length=496bp
GAGGTATAAACTCTTTCTCCAAGCACCCAAAAAAGAACGCACTAAGAGAA
GATCCCTCTCGTTTTTGTTGTGTGTTTATTTTGTTCGCCGATGGGCCAAA
CACCTTCAACGGCGATAGACCCGAGCGATCGGTTTAATATCTTATCTCCG
GCGATCGTTTACAATGATGGTGTTGAGTTCTCCGACGAATTGGACAAGGC
TCGGGATTTCACCGGCGATTTACCGGACGATTGTTTGGCATATATTTTTC
AATTCCTCGGTTCTGGAGATCGGAAGCGATGTTCCCTTGTGTGCAAACGG
TGGCTCCGCGTGGACGGCGGGAGTCGCTATCGGCTATCTCTCAATGCTCA
GAGCGAGATATTATCGTCTCTGCCTTCAGTTTTCTCGCGCTTCGACTCCG
TCACGAAGCTAGCTCTGCGATGCGACCGCAAATCGATTAGCTTAGACGAC
GACGCTTTGGTTTTGATCTCTCTTCGTTGTCAGAAACTCACGCGCC
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