CN184461

Overview
NameCN184461
Unique NameCN184461
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length690
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN184461_ssr2 microsatellite CN184461_ssr2:2..11. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5201 contig Csv1_Contig5201:268..957. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184461 vs. ExPASy Swiss-Prot
Match: QKIL4_ARATH (KH domain-containing protein At3g08620 OS=Arabidopsis thaliana GN=At3g08620 PE=2 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 2.424e-55
Identity = 104/120 (86.67%), Postives = 115/120 (95.83%), Query Frame = -2
Query:  330 KRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELAMLNSNFREDSPGPSGSVSPFNSSGMKRAKTGR 689
            KRVEATTGCRVYIRGKGSIKDP+KE+KL+G+PGYEHLN+ LHILIEADLP +IVDI+LRQAQEIIEEL+KPVDESQDYIKRQQLRELA+LNSN RE+SPGPSGSVSPFNS+ MKR KTGR
Sbjct:  164 KRVEATTGCRVYIRGKGSIKDPEKEEKLKGKPGYEHLNEQLHILIEADLPIDIVDIKLRQAQEIIEELVKPVDESQDYIKRQQLRELALLNSNLRENSPGPSGSVSPFNSNAMKRPKTGR 283          
BLAST of CN184461 vs. ExPASy Swiss-Prot
Match: QKIL3_ARATH (KH domain-containing protein At2g38610 OS=Arabidopsis thaliana GN=At2g38610 PE=1 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 4.279e-52
Identity = 107/122 (87.70%), Postives = 115/122 (94.26%), Query Frame = -2
Query:  333 KRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELAMLNS-NFREDSPGPS--GSVSPFNSSGMKRAKTG 689
            KRVEATTGCRV+IRGKGSIKDP+KEDKLRGRPGYEHLN+ LHILIEADLPA+IV+IRLRQAQEIIEELLKPVDESQD+IKRQQLRELA+LNS N RE+SPGPS  GSVSPFNSSG KR KTG
Sbjct:  165 KRVEATTGCRVFIRGKGSIKDPEKEDKLRGRPGYEHLNEQLHILIEADLPASIVEIRLRQAQEIIEELLKPVDESQDFIKRQQLRELALLNSNNLREESPGPSGGGSVSPFNSSG-KRPKTG 285          
BLAST of CN184461 vs. ExPASy Swiss-Prot
Match: QKIL1_ARATH (KH domain-containing protein At4g26475 OS=Arabidopsis thaliana GN=At4g26475 PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 8.944e-42
Identity = 80/118 (67.80%), Postives = 100/118 (84.75%), Query Frame = -2
Query:  336 KRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELAMLNSNFREDSPGPSGSVSPFNSSGMKRAKT 689
            KRVEA+T CRV IRG+GSIKDP KED +RG+PGYEHLN+PLHIL+EA+LP  IVD RL QA+EI+++LL PV+E+ D+ K+QQLRELA+LN + RE+    SGS+SP+NS GMKRAKT
Sbjct:  189 KRVEASTDCRVLIRGRGSIKDPIKEDMMRGKPGYEHLNEPLHILVEAELPIEIVDARLMQAREILDDLLTPVEETHDFYKKQQLRELALLNGSLREEGSPMSGSISPYNSLGMKRAKT 306          
BLAST of CN184461 vs. ExPASy Swiss-Prot
Match: QKIL2_ARATH (KH domain-containing protein At5g56140 OS=Arabidopsis thaliana GN=At5g56140 PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.687e-40
Identity = 79/118 (66.95%), Postives = 98/118 (83.05%), Query Frame = -2
Query:  336 KRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELAMLNSNFREDSPGPSGSVSPFNSSGMKRAKT 689
            KRVEA+T CRV IRG+GSIKDP KE+ +RG+PGYEHLN+PLHIL+EA+LP  IVD RL QA+EI+++LL P++E+ D  K+QQLRELA+LN   RE+    SGSVSP+NS GMKRAKT
Sbjct:  195 KRVEASTDCRVLIRGRGSIKDPIKEEMMRGKPGYEHLNEPLHILVEAELPIEIVDARLMQAREILDDLLTPMEETHDMYKKQQLRELALLNGTLREEGSPMSGSVSPYNSLGMKRAKT 312          
BLAST of CN184461 vs. ExPASy Swiss-Prot
Match: QKIL5_ARATH (KH domain-containing protein At1g09660 OS=Arabidopsis thaliana GN=At1g09660 PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.806e-34
Identity = 74/124 (59.68%), Postives = 93/124 (75.00%), Query Frame = -2
Query:  336 KRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELAMLNSNFREDSPGP------SGSVSPFNSSGMKRAKT 689
            KRVE  T CRV+IRG+GS+KD  KE+KL+G+PGYEHL +PLH+LIEA+LP +I++ RL  A   +E LLKP+DES D+ KR+QL+ELA LN   RE+SP P      S S+SPFNS   KRAKT
Sbjct:  176 KRVELATHCRVFIRGRGSVKDTVKEEKLKGKPGYEHLCEPLHVLIEAELPEDIINSRLEHAVHFLESLLKPMDESMDHYKREQLKELAALNGTLREESPSPSLSPCLSPSMSPFNS---KRAKT 296          
BLAST of CN184461 vs. ExPASy Swiss-Prot
Match: QKI_RAT (Protein quaking OS=Rattus norvegicus GN=Qki PE=1 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 8.703e-21
Identity = 44/96 (45.83%), Postives = 71/96 (73.96%), Query Frame = -2
Query:  402 KRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELAMLNSNFRE 689
            K++EA TGC++ +RGKGS++D  KE++ RG+P +EHLN+ LH+LI  +   N  +I+L++A E +++LL P  E +D +K+ QL ELA+LN  +R+
Sbjct:  111 KQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELAILNGTYRD 206          
BLAST of CN184461 vs. ExPASy Swiss-Prot
Match: QKI_PIG (Protein quaking OS=Sus scrofa GN=QKI PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.703e-21
Identity = 44/96 (45.83%), Postives = 71/96 (73.96%), Query Frame = -2
Query:  402 KRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELAMLNSNFRE 689
            K++EA TGC++ +RGKGS++D  KE++ RG+P +EHLN+ LH+LI  +   N  +I+L++A E +++LL P  E +D +K+ QL ELA+LN  +R+
Sbjct:  111 KQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELAILNGTYRD 206          
BLAST of CN184461 vs. ExPASy Swiss-Prot
Match: QKI_MOUSE (Protein quaking OS=Mus musculus GN=Qki PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.703e-21
Identity = 44/96 (45.83%), Postives = 71/96 (73.96%), Query Frame = -2
Query:  402 KRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELAMLNSNFRE 689
            K++EA TGC++ +RGKGS++D  KE++ RG+P +EHLN+ LH+LI  +   N  +I+L++A E +++LL P  E +D +K+ QL ELA+LN  +R+
Sbjct:  111 KQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELAILNGTYRD 206          
BLAST of CN184461 vs. ExPASy Swiss-Prot
Match: QKI_HUMAN (Protein quaking OS=Homo sapiens GN=QKI PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.703e-21
Identity = 44/96 (45.83%), Postives = 71/96 (73.96%), Query Frame = -2
Query:  402 KRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELAMLNSNFRE 689
            K++EA TGC++ +RGKGS++D  KE++ RG+P +EHLN+ LH+LI  +   N  +I+L++A E +++LL P  E +D +K+ QL ELA+LN  +R+
Sbjct:  111 KQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELAILNGTYRD 206          
BLAST of CN184461 vs. ExPASy Swiss-Prot
Match: QKI_HORSE (Protein quaking OS=Equus caballus GN=QKI PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.703e-21
Identity = 44/96 (45.83%), Postives = 71/96 (73.96%), Query Frame = -2
Query:  402 KRVEATTGCRVYIRGKGSIKDPDKEDKLRGRPGYEHLNDPLHILIEADLPANIVDIRLRQAQEIIEELLKPVDESQDYIKRQQLRELAMLNSNFRE 689
            K++EA TGC++ +RGKGS++D  KE++ RG+P +EHLN+ LH+LI  +   N  +I+L++A E +++LL P  E +D +K+ QL ELA+LN  +R+
Sbjct:  111 KQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQNRAEIKLKRAVEEVKKLLVPAAEGEDSLKKMQLMELAILNGTYRD 206          
The following BLAST results are available for this feature:
BLAST of CN184461 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
QKIL4_ARATH2.424e-5586.67KH domain-containing protein At3g08620 OS=Arabidop... [more]
QKIL3_ARATH4.279e-5287.70KH domain-containing protein At2g38610 OS=Arabidop... [more]
QKIL1_ARATH8.944e-4267.80KH domain-containing protein At4g26475 OS=Arabidop... [more]
QKIL2_ARATH1.687e-4066.95KH domain-containing protein At5g56140 OS=Arabidop... [more]
QKIL5_ARATH1.806e-3459.68KH domain-containing protein At1g09660 OS=Arabidop... [more]
QKI_RAT8.703e-2145.83Protein quaking OS=Rattus norvegicus GN=Qki PE=1 S... [more]
QKI_PIG8.703e-2145.83Protein quaking OS=Sus scrofa GN=QKI PE=2 SV=1[more]
QKI_MOUSE8.703e-2145.83Protein quaking OS=Mus musculus GN=Qki PE=1 SV=1[more]
QKI_HUMAN8.703e-2145.83Protein quaking OS=Homo sapiens GN=QKI PE=1 SV=1[more]
QKI_HORSE8.703e-2145.83Protein quaking OS=Equus caballus GN=QKI PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0005I21_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005I21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184461 ID=CN184461; Name=CN184461; organism=Citrus sinensis; type=EST; length=690bp
TTATATATATATTCCACACTCCTCAAAGTTACTGACACAAGAATAAATCA
AATGAATGTATTAAGTTTACAGGAATAACTGACCTCCGCAAACCTAAAAT
TCAAGAACCAACTATATAATTCTTTTTAATGTCTTTCATTGTTGTTTTTC
TTCTTGTTCCAAAAGAAAACCAAAATATAAGAAAACCCACCAGAAGTCTC
ACCAGCAAGAACTGTTAGCCTAATCTTTGGTAGCTGTACTGAGCTGAGAG
GTATCAGACGGTATACTCAAGTTTGAAATTCTGGAGCAGGGTGAAAACCA
TTTGACAAAGTGATGGATATGAACTCTCAGCGTCCTGTTTTTGCACGTTT
CATTCCACTTGAATTGAACGGAGAAACACTGCCACTTGGCCCCGGGCTAT
CTTCTCTGAAATTTGAATTCAGCATTGCCAACTCACGCAACTGCTGCCTC
TTAATATAATCTTGTGACTCATCCACAGGTTTCAGCAATTCTTCTATAAT
CTCCTGCGCCTGTCTCAGCCTGATATCAACAATGTTGGCAGGTAAATCAG
CCTCAATTAAGATGTGAAGTGGATCATTGAGATGCTCATAGCCTGGCCTT
CCCCTTAGCTTATCTTCCTTGTCTGGATCCTTTATTGAGCCCTTCCCTCT
AATGTACACACGGCAGCCAGTAGTAGCTTCAACCCGTTTC
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