CN184460

Overview
NameCN184460
Unique NameCN184460
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length682
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN184460_ssr4 microsatellite CN184460_ssr4:4..15. BLAST: Citrus ESTs to Prunus persica proteins V1
CN184460_ssr16 microsatellite CN184460_ssr16:16..27. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CN184460 vs. ExPASy Swiss-Prot
Match: AS1_ARATH (Transcription factor AS1 OS=Arabidopsis thaliana GN=AS1 PE=1 SV=1)

HSP 1 Score: 261.922 bits (668), Expect = 2.220e-69
Identity = 127/167 (76.05%), Postives = 140/167 (83.83%), Query Frame = 1
Query:  169 MKERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQNLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREQKDSIRIVDPIDEHKYDQILETFAEKLVNNHS-----------FVMATSNGGFLHTD 636
            MKERQRW  EEDALLRAYV+Q+GP+EW  VS+RMN PLNRDAKSCLERWKNYLKPGIKKGSLT+EEQ LVI LQ KHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQRE+K+S + V+PIDE KYD+ILE+FAEKLV   S            VMA SNGGFLH++
Sbjct:    1 MKERQRWSGEEDALLRAYVRQFGPREWHLVSERMNKPLNRDAKSCLERWKNYLKPGIKKGSLTEEEQRLVIRLQEKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREEKESNKRVEPIDESKYDRILESFAEKLVKERSNVVPAAAAAATVVMANSNGGFLHSE 167          
BLAST of CN184460 vs. ExPASy Swiss-Prot
Match: RS2_ORYSJ (Protein rough sheath 2 homolog OS=Oryza sativa subsp. japonica GN=RS2 PE=2 SV=1)

HSP 1 Score: 231.491 bits (589), Expect = 3.213e-60
Identity = 112/150 (74.67%), Postives = 126/150 (84.00%), Query Frame = 1
Query:  169 MKERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQNLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQRE--QKDSIRIVDPIDEH-------KYDQILETFAEKLVNNH 591
            M+ERQRWR EEDA+L AYV+QYGP+EWS VSQRMN PL+RDAKSCLERWKNYL+PGIKKGSLTD+EQ LVI LQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQRE   +D  R+  P+D         +YD +LE FA+KLVN+H
Sbjct:    6 MRERQRWRPEEDAILLAYVRQYGPREWSLVSQRMNRPLHRDAKSCLERWKNYLRPGIKKGSLTDDEQRLVIRLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQRELRDRDRRRLPPPLDGDERGCAGGRYDWLLEDFADKLVNDH 155          
BLAST of CN184460 vs. ExPASy Swiss-Prot
Match: RS2_MAIZE (Protein rough sheath 2 OS=Zea mays GN=RS2 PE=1 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 4.639e-59
Identity = 113/160 (70.62%), Postives = 125/160 (78.12%), Query Frame = 1
Query:  169 MKERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQNLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREQKDSIR---IVDPIDEHKYDQILETFAEKLVNNHSFVMATSNGGFLHTDP 639
            MKERQRWR EEDA+LRAYV+QYGP+EW  VSQRMN  L+RDAKSCLERWKNYL+PGIKKGSLT+EEQ LVI LQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQRE +DS R      P +  +Y+ +LE FAEKLV       A +    L   P
Sbjct:    1 MKERQRWRPEEDAVLRAYVRQYGPREWHLVSQRMNVALDRDAKSCLERWKNYLRPGIKKGSLTEEEQRLVIRLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQRELRDSRRPPPEPSPDERGRYEWLLENFAEKLVGERPQQAAAAPSPLLMAAP 160          
BLAST of CN184460 vs. ExPASy Swiss-Prot
Match: MYB59_ARATH (Transcription factor MYB59 OS=Arabidopsis thaliana GN=MYB59 PE=2 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 1.723e-21
Identity = 48/116 (41.38%), Postives = 70/116 (60.34%), Query Frame = 1
Query:  157 LLLEMKERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQNLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREQK 504
            L+ E   +  W  +ED LL  +V  +G + W FV++     LNR  KSC  RW NYL PG+K+G +T +E+ LV+ L AK GN+W KIA ++PGRT   +  +W     K+ +E+K
Sbjct:    3 LVQEEYRKGPWTEQEDILLVNFVHLFGDRRWDFVAKVSG--LNRTGKSCRLRWVNYLHPGLKRGKMTPQEERLVLELHAKWGNRWSKIARKLPGRTDNEIKNYWRTHMRKKAQEKK 116          
BLAST of CN184460 vs. ExPASy Swiss-Prot
Match: MYB48_ARATH (Transcription factor MYB48 OS=Arabidopsis thaliana GN=MYB48 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.839e-21
Identity = 45/106 (42.45%), Postives = 66/106 (62.26%), Query Frame = 1
Query:  187 WRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQNLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREQK 504
            W  +ED LL  +V  +G + W F+++     LNR  KSC  RW NYL PG+K+G +T +E+ LV+ L AK GN+W KIA ++PGRT   +  +W     K+ +E+K
Sbjct:   12 WTEQEDILLVNFVHLFGDRRWDFIAKVSG--LNRTGKSCRLRWVNYLHPGLKRGKMTPQEERLVLELHAKWGNRWSKIARKLPGRTDNEIKNYWRTHMRKKAQEKK 115          
BLAST of CN184460 vs. ExPASy Swiss-Prot
Match: MYB82_ARATH (Transcription factor MYB82 OS=Arabidopsis thaliana GN=MYB82 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.250e-20
Identity = 43/112 (38.39%), Postives = 69/112 (61.61%), Query Frame = 1
Query:  175 ERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQNLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREQKDS 510
            +R  W+ EED +L++YV+ +G   W+ +S+R    L R  KSC  RWKNYL+P IK+GS++ +EQ+L+I +    GN+W  IA  +PGRT   +  +W     K+   ++ +
Sbjct:   13 KRGLWKPEEDMILKSYVETHGEGNWADISRRSG--LKRGGKSCRLRWKNYLRPNIKRGSMSPQEQDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNKKPNSRRQN 122          
BLAST of CN184460 vs. ExPASy Swiss-Prot
Match: MY104_ARATH (Transcription factor MYB104 OS=Arabidopsis thaliana GN=MYB104 PE=2 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 3.250e-20
Identity = 48/106 (45.28%), Postives = 65/106 (61.32%), Query Frame = 1
Query:  160 LLEMKE---RQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQNLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWW 468
            LL MK+   + +W+ EED +L+ YV QYG + W+ V +R   P N    SC  RW N+LKP +KKG  TDEE+  V+ L A  GNKW ++A E PGRT   +  +W
Sbjct:    9 LLAMKKTFTKSKWKPEEDRILKDYVIQYGDRTWTHVPKRTGLPHN--PASCRFRWMNHLKPSLKKGPFTDEEEKRVLQLHAVLGNKWSQMAREFPGRTDNEIKNFW 112          
BLAST of CN184460 vs. ExPASy Swiss-Prot
Match: MYB06_ANTMA (Myb-related protein 306 OS=Antirrhinum majus GN=MYB306 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.245e-20
Identity = 46/113 (40.71%), Postives = 70/113 (61.95%), Query Frame = 1
Query:  151 CCLLLEMKERQRWRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQNLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQ 489
            CC  + +K+   W  EED +L +Y++++GP  W  +    NT L R +KSC  RW NYL+PGIK+G  T+ E+ ++IHLQA  GN+W  IA+ +P RT   +  +W    +K+
Sbjct:    6 CCDKIGVKKGP-WTPEEDIILVSYIQEHGPGNWRAIPS--NTGLLRCSKSCRLRWTNYLRPGIKRGDFTEHEEKMIIHLQALLGNRWAAIASYLPHRTDNDIKNYWNTHLKKK 115          
BLAST of CN184460 vs. ExPASy Swiss-Prot
Match: GAM1_ORYSJ (Transcription factor GAMYB OS=Oryza sativa subsp. japonica GN=GAM1 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.241e-20
Identity = 46/103 (44.66%), Postives = 66/103 (64.08%), Query Frame = 1
Query:  187 WRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQNLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQR 495
            W + EDA+L  YVK++G   W+ V +  NT L R  KSC  RW N+L+P +KKG+ T EE+ L+I L +K GNKW ++AA +PGRT   +  +W    ++ QR
Sbjct:   45 WTSAEDAILVDYVKKHGEGNWNAVQK--NTGLFRCGKSCRLRWANHLRPNLKKGAFTAEEERLIIQLHSKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRCQR 145          
BLAST of CN184460 vs. ExPASy Swiss-Prot
Match: GAM1_ORYSI (Transcription factor GAMYB OS=Oryza sativa subsp. indica GN=GAM1 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.241e-20
Identity = 46/103 (44.66%), Postives = 66/103 (64.08%), Query Frame = 1
Query:  187 WRAEEDALLRAYVKQYGPKEWSFVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTDEEQNLVIHLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQR 495
            W + EDA+L  YVK++G   W+ V +  NT L R  KSC  RW N+L+P +KKG+ T EE+ L+I L +K GNKW ++AA +PGRT   +  +W    ++ QR
Sbjct:   45 WTSAEDAILVDYVKKHGEGNWNAVQK--NTGLFRCGKSCRLRWANHLRPNLKKGAFTAEEERLIIQLHSKMGNKWARMAAHLPGRTDNEIKNYWNTRIKRCQR 145          
The following BLAST results are available for this feature:
BLAST of CN184460 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
AS1_ARATH2.220e-6976.05Transcription factor AS1 OS=Arabidopsis thaliana G... [more]
RS2_ORYSJ3.213e-6074.67Protein rough sheath 2 homolog OS=Oryza sativa sub... [more]
RS2_MAIZE4.639e-5970.63Protein rough sheath 2 OS=Zea mays GN=RS2 PE=1 SV=... [more]
MYB59_ARATH1.723e-2141.38Transcription factor MYB59 OS=Arabidopsis thaliana... [more]
MYB48_ARATH3.839e-2142.45Transcription factor MYB48 OS=Arabidopsis thaliana... [more]
MYB82_ARATH3.250e-2038.39Transcription factor MYB82 OS=Arabidopsis thaliana... [more]
MY104_ARATH3.250e-2045.28Transcription factor MYB104 OS=Arabidopsis thalian... [more]
MYB06_ANTMA4.245e-2040.71Myb-related protein 306 OS=Antirrhinum majus GN=MY... [more]
GAM1_ORYSJ7.241e-2044.66Transcription factor GAMYB OS=Oryza sativa subsp. ... [more]
GAM1_ORYSI7.241e-2044.66Transcription factor GAMYB OS=Oryza sativa subsp. ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS04_0005I20_r Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005I20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184460 ID=CN184460; Name=CN184460; organism=Citrus sinensis; type=EST; length=682bp
AGGGTTTGTTTGTTTTTTCTTTCTTTCTCTCTTGCTTTCTGTTTCATTGA
AGAAGCTAAGGTTGCCGGATGTGCAAAGAAGAACAAGTTGGGTTTTTTAA
CACTTGAAGTTAAGAAATATACAGTATGAAGAATTTTACGCAATGGACAG
TGTTGTTTACTCCTGGAAATGAAGGAGAGACAGCGTTGGAGAGCTGAAGA
GGATGCTTTATTACGTGCATATGTGAAACAATATGGCCCGAAGGAGTGGA
GTTTTGTATCACAGCGCATGAACACACCCCTAAACAGGGATGCAAAATCT
TGCTTAGAAAGGTGGAAGAACTACCTCAAACCAGGCATCAAGAAAGGATC
CCTTACTGACGAGGAGCAGAATCTTGTCATCCATCTCCAAGCAAAACACG
GCAACAAGTGGAAGAAAATTGCAGCTGAAGTCCCCGGTCGAACTGCTAAG
AGACTGGGCAAGTGGTGGGAAGTGTTCAAAGAGAAGCAGCAGAGAGAACA
AAAGGATTCCATAAGAATAGTTGATCCAATTGATGAGCACAAGTACGATC
AGATTCTAGAGACTTTTGCAGAGAAGCTAGTGAACAACCATTCATTTGTC
ATGGCCACTTCTAACGGAGGTTTTCTTCATACTGACCCAGCTACCCCTCC
AAATCTGCTTCCCCCATGGCTTTCAAATTCGA
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