CN184459

Overview
NameCN184459
Unique NameCN184459
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length527
Libraries
Library NameType
Ruby Orange Developing Flower cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5312 contig Csv1_Contig5312:56..581. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN184459 vs. ExPASy Swiss-Prot
Match: AS1_ARATH (Transcription factor AS1 OS=Arabidopsis thaliana GN=AS1 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 7.393e-22
Identity = 37/54 (68.52%), Postives = 49/54 (90.74%), Query Frame = -1
Query:  255 DEQRATLDRIEAEYREQIAGLRRDAEAKEQKLAEQWSAKHLRLTKFLE-QMGCR 413
            +EQ+  +++IE EYREQ+ GLRRDAEAK+QKLA+QW+++H+RLTKFLE QMGCR
Sbjct:  310 EEQKNAMEKIEGEYREQLVGLRRDAEAKDQKLADQWTSRHIRLTKFLEQQMGCR 363          

HSP 2 Score: 41.2022 bits (95), Expect = 7.393e-22
Identity = 18/20 (90.00%), Postives = 19/20 (95.00%), Query Frame = -3
Query:  466 KEAAWRLRRVELQLESEKAC 525
            KEAAWRLRR+ELQLESEK C
Sbjct:  273 KEAAWRLRRLELQLESEKTC 292          
BLAST of CN184459 vs. ExPASy Swiss-Prot
Match: RS2_ORYSJ (Protein rough sheath 2 homolog OS=Oryza sativa subsp. japonica GN=RS2 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.028e-20
Identity = 38/54 (70.37%), Postives = 48/54 (88.89%), Query Frame = -1
Query:  255 DEQRATLDRIEAEYREQIAGLRRDAEAKEQKLAEQWSAKHLRLTKFLEQM-GCR 413
            +EQ A ++R+EAEYRE++AGLRRDAEAKEQK+AEQW+AKH RL KFL+Q+  CR
Sbjct:  270 EEQAAAVERVEAEYREKMAGLRRDAEAKEQKMAEQWAAKHARLAKFLDQVAACR 323          

HSP 2 Score: 38.891 bits (89), Expect = 1.028e-20
Identity = 15/20 (75.00%), Postives = 20/20 (100.00%), Query Frame = -3
Query:  466 KEAAWRLRRVELQLESEKAC 525
            KEAAWR++RVE+QLE+E+AC
Sbjct:  233 KEAAWRMKRVEMQLETERAC 252          
BLAST of CN184459 vs. ExPASy Swiss-Prot
Match: RS2_MAIZE (Protein rough sheath 2 OS=Zea mays GN=RS2 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.044e-15
Identity = 30/50 (60.00%), Postives = 42/50 (84.00%), Query Frame = -1
Query:  261 EQRATLDRIEAEYREQIAGLRRDAEAKEQKLAEQWSAKHLRLTKFLEQMG 410
            EQ A  +R+E ++RE++A LRRDA+ KE+K+AEQW+AKH R+ KF+EQMG
Sbjct:  307 EQAAAAERVERDHREKVAELRRDAQVKEEKMAEQWAAKHARVAKFVEQMG 356          

HSP 2 Score: 31.187 bits (69), Expect = 3.044e-15
Identity = 13/18 (72.22%), Postives = 16/18 (88.89%), Query Frame = -3
Query:  472 KEAAWRLRRVELQLESEK 525
            +EAAWRL+RVE QLE E+
Sbjct:  269 REAAWRLKRVEQQLEMER 286          
The following BLAST results are available for this feature:
BLAST of CN184459 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
AS1_ARATH7.393e-2268.52Transcription factor AS1 OS=Arabidopsis thaliana G... [more]
RS2_ORYSJ1.028e-2070.37Protein rough sheath 2 homolog OS=Oryza sativa sub... [more]
RS2_MAIZE3.044e-1560.00Protein rough sheath 2 OS=Zea mays GN=RS2 PE=1 SV=... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS04_0005I20_f Ruby Orange Developing Flower cDNA Library Citrus sinensis cDNA clone CS_REb0005I20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN184459 ID=CN184459; Name=CN184459; organism=Citrus sinensis; type=EST; length=527bp
TTTTTTTTTTTTTTTTTAGGTAACACCATCGAGCTTGCATTTCAACCAGT
TCAAGCAAGTAGTAAACACCATTACAGTAATTATAGATAAATATCTATAG
CAGAATTCCAGGCATACTGCCAGTGGGAACCTGTTCAGACATAGAAGATT
ACTTTAACGACACAAAATTCAAACCAAAAGGCCAGACCACGTACAGCATT
GCCAATTGTGTATTACTGATGTCCTCAACGGCCATTGGACTCAGAGAGCC
TCGGCCTGCACCCCATCTGCTCAAGAAACTTGGTAAGACGCAAGTGCTTT
GCAGACCATTGCTCAGCCAGTTTCTGCTCCTTGGCTTCAGCATCCCTTCT
TAGTCCAGCAATCTGTTCCCTGTATTCTGCTTCGATCCTATCCAAAGTAG
CCCTCTGCTCATCCCTAAAGAGCTTTCATCTTAGCCTCTATCTCCTCCAT
TTTCTCCCTCCTCCGGCATGCTTTCTCTGATTCCAGCTGCAACTCTACCC
TTCTCAATCTCCATGCTGCTTCTTTCT
back to top