DC887279

Overview
NameDC887279
Unique NameDC887279
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length708
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC887279 vs. ExPASy Swiss-Prot
Match: RN217_XENLA (Probable E3 ubiquitin-protein ligase RNF217 OS=Xenopus laevis GN=rnf217 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.786e-16
Identity = 37/93 (39.78%), Postives = 53/93 (56.99%), Query Frame = -2
Query:  237 ECPFCHRLFCAQCYVPWHPGVNCEEYQRLNVDERGREDLMVRELAKE-----KKWSRCPHCKYYVERTEGCPHMTC-RCQFQFCYGCEAEWTQ 497
            +CP C  ++C +C+ PWH GVNC EY+        + D ++R  A E     +   +CP CK +++RTEGC HMTC +C   FCY C   + Q
Sbjct:  114 QCPSCQFIWCFRCHAPWHEGVNCREYK--------KGDKLLRHWANEIEHGQRNAQKCPRCKVHIQRTEGCDHMTCSQCNTNFCYRCGERYRQ 198          
BLAST of DC887279 vs. ExPASy Swiss-Prot
Match: RN217_HUMAN (Probable E3 ubiquitin-protein ligase RNF217 OS=Homo sapiens GN=RNF217 PE=2 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 2.333e-16
Identity = 53/168 (31.55%), Postives = 78/168 (46.43%), Query Frame = -2
Query:  237 VTCPGLDCKSVLEYEACKPVLPKEVLELWGEALCQELIDAAQRFYCPFKDCSAMLVYENDGETVI---SES----ECPFCHRLFCAQCYVPWHPGVNCEEYQRLNVDERGREDLMVRELAKE-----KKWSRCPHCKYYVERTEGCPHMTC-RCQFQFCYGCEAEWTQ 701
            + CP  +C   LE       L  E    +   L    ID++ +   P   C     ++  G       SES    +CP C  ++C +C+ PWH GVNC+EY+        + D ++R  A E     +   +CP CK +++RTEGC HMTC +C   FCY C   + Q
Sbjct:   10 IKCPITECFEFLEETTVVYNLTHEDSIKYKYFLELGRIDSSTK---PCPQCKHFTTFKKKGHIPTPSRSESKYKIQCPTCQFVWCFKCHSPWHEGVNCKEYK--------KGDKLLRHWASEIEHGQRNAQKCPKCKIHIQRTEGCDHMTCSQCNTNFCYRCGERYRQ 166          
BLAST of DC887279 vs. ExPASy Swiss-Prot
Match: R144A_XENTR (Probable E3 ubiquitin-protein ligase RNF144A OS=Xenopus tropicalis GN=rnf144a PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.298e-14
Identity = 43/154 (27.92%), Postives = 70/154 (45.45%), Query Frame = -2
Query:  255 VTCPGLDC--KSVLEYEACKPVLPKEVLELWGEALCQE--LIDAAQRFYCPFKDCSAMLVYENDGETVISESECPFCHRLFCAQCYVPWHPGVNCEEYQRLNVDERGREDLMVRELAKEKKWSRCPHCKYYVERTEGCPHMTCR-CQFQFCYGC 701
            ++CP   C  +  L+    + ++  E+++ + +   ++  L+D   R +CP   C A+   +  G       +C  C   FC+ C   WHPG  C E   +     G      + L  +    RCP CK Y+ER EGC  M C+ C+  FC+ C
Sbjct:   63 ISCPDASCPKRGHLQENEIECMVAAEIMQKYKKLQFEKEILLDPC-RTWCPSSSCQAVCKLQEKGIQNPQLVQCSACDIEFCSACKANWHPGQGCPENMAITF-LPGDSSSFFKSLEDDVPIKRCPKCKVYIERDEGCAQMMCKNCKHAFCWYC 214          
BLAST of DC887279 vs. ExPASy Swiss-Prot
Match: R144B_HUMAN (E3 ubiquitin-protein ligase RNF144B OS=Homo sapiens GN=RNF144B PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.414e-13
Identity = 45/157 (28.66%), Postives = 74/157 (47.13%), Query Frame = -2
Query:  255 SRVTCPGLDCKS--VLEYEACKPVLPKEVLELWGEALCQELIDA-AQRFYCPFKDCSAM--LVYENDGETVISESECPFCHRLFCAQCYVPWHPGVNCEEYQRLNVDERGREDLMVRELAKEKKWSRCPHCKYYVERTEGCPHMTCR-CQFQFCYGC 707
            S +TCP + C +   L+      ++P +  +L+     +  +     R +CP  DC  +  +   + G+ V+ E  CP CH  FC+ C   WH  V+C + Q + +    R    +     E    +CP C+ Y+ER EGC  M C+ C+  FC+ C
Sbjct:   71 SPITCPDMVCLNHGTLQEAEIACLVPVDQFQLYQRLKFEREVHLDPYRTWCPVADCQTVCPVASSDPGQPVLVE--CPSCHLKFCSCCKDAWHAEVSCRDSQPIVLPTEHR---ALFGTDAEAPIKQCPVCRVYIERNEGCAQMMCKNCKHTFCWYC 222          
BLAST of DC887279 vs. ExPASy Swiss-Prot
Match: R144A_HUMAN (Probable E3 ubiquitin-protein ligase RNF144A OS=Homo sapiens GN=RNF144A PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.414e-13
Identity = 41/153 (26.80%), Postives = 69/153 (45.10%), Query Frame = -2
Query:  255 VTCPGLDC--KSVLEYEACKPVLPKEVLELWGEALCQ-ELIDAAQRFYCPFKDCSAMLVYENDGETVISESECPFCHRLFCAQCYVPWHPGVNCEEYQRLNVDERGREDLMVRELAKEKKWSRCPHCKYYVERTEGCPHMTCR-CQFQFCYGC 701
            ++CP   C  +  L+    + ++  E+++ + +   + E++    R +CP   C A+   ++ G       +C  C   FC+ C   WHPG  C E   +     G      +    +    RCP CK Y+ER EGC  M C+ C+  FC+ C
Sbjct:   63 ISCPDAACPKQGHLQENEIECMVAAEIMQRYKKLQFEREVLFDPCRTWCPASTCQAVCQLQDVGLQTPQPVQCKACRMEFCSTCKASWHPGQGCPETMPITF-LPGETSAAFKMEEDDAPIKRCPKCKVYIERDEGCAQMMCKNCKHAFCWYC 214          
BLAST of DC887279 vs. ExPASy Swiss-Prot
Match: R1441_DANRE (Probable E3 ubiquitin-protein ligase RNF144A-A OS=Danio rerio GN=rnf144aa PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.379e-13
Identity = 39/153 (25.49%), Postives = 68/153 (44.44%), Query Frame = -2
Query:  255 VTCPGLDC--KSVLEYEACKPVLPKEVLELWGEALCQ-ELIDAAQRFYCPFKDCSAMLVYENDGETVISESECPFCHRLFCAQCYVPWHPGVNCEEYQRLNVDERGREDLMVRELAKEKKWSRCPHCKYYVERTEGCPHMTCR-CQFQFCYGC 701
            ++CP   C  +  L+    + ++  E+++ + +   + E++    R +CP   C A+   +     +     C  C   FC+ C   WHP  +C+E   +     G      +    +    RCP CK Y+ER EGC  M C+ C+  FC+ C
Sbjct:   63 ISCPDSACPKRGHLQENEIECMVATEIMQRYRKLQFEKEVLLDPSRTWCPSSTCQAVCQLKESDTVLPQLVRCSVCTLEFCSACKASWHPDQDCQENVPITSFLPGESSSFFKADDDDAPIKRCPKCKVYIERDEGCAQMMCKNCKHAFCWYC 215          
BLAST of DC887279 vs. ExPASy Swiss-Prot
Match: R144B_BOVIN (E3 ubiquitin-protein ligase RNF144B OS=Bos taurus GN=RNF144B PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.669e-12
Identity = 48/158 (30.38%), Postives = 75/158 (47.47%), Query Frame = -2
Query:  255 SRVTCPGLDCKS--VLEYEACKPVLPKEVLELWGEALCQELIDAAQ-RFYCPFKDCSAM--LVYENDGETVISESECPFCHRLFCAQCYVPWHPGVNCEEYQ-RLNVDERGREDLMVRELAKEKKWSRCPHCKYYVERTEGCPHMTCR-CQFQFCYGC 707
            S +TCP + C +   L+      ++P +  +L+     +  +     R +CP  DC  +  +   + G+ V+ E  CP CH  FC+ C   WH  V+C + Q  +   E G   L   E     K  +CP C+ Y+ER EGC  M C+ C+  FC+ C
Sbjct:   72 SPITCPDMVCLNHGTLQEAEIACLVPVDQFQLYQRLKFEREVHLDPCRTWCPVADCQTVCPVATSDPGQPVLVE--CPSCHLKFCSCCKDAWHAEVSCRDSQPGILPTEHG--TLFGTETDAPIK--QCPVCRVYIERNEGCAQMMCKNCKHTFCWYC 223          
BLAST of DC887279 vs. ExPASy Swiss-Prot
Match: R144A_MOUSE (Probable E3 ubiquitin-protein ligase RNF144A OS=Mus musculus GN=Rnf144a PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.669e-12
Identity = 40/153 (26.14%), Postives = 69/153 (45.10%), Query Frame = -2
Query:  255 VTCPGLDC--KSVLEYEACKPVLPKEVLELWGEALCQ-ELIDAAQRFYCPFKDCSAMLVYENDGETVISESECPFCHRLFCAQCYVPWHPGVNCEEYQRLNVDERGREDLMVRELAKEKKWSRCPHCKYYVERTEGCPHMTCR-CQFQFCYGC 701
            ++CP   C  +  L+    + ++  E+++ + +   + E++    R +CP   C A+   ++ G       +C  C   FC+ C   WHPG  C E   +     G      +    +    RCP C+ Y+ER EGC  M C+ C+  FC+ C
Sbjct:   63 ISCPDAACPKQGHLQENEIECMVAAEIMQRYKKLQFEREVLFDPCRTWCPASTCQAVCQLQDIGLQTPQLVQCKACDMEFCSACKARWHPGQGCPETMPITF-LPGETSSAFKMEEGDAPIKRCPKCRVYIERDEGCAQMMCKNCKHAFCWYC 214          
BLAST of DC887279 vs. ExPASy Swiss-Prot
Match: R1442_DANRE (Probable E3 ubiquitin-protein ligase RNF144A-B OS=Danio rerio GN=rnf144ab PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.486e-12
Identity = 36/109 (33.03%), Postives = 51/109 (46.79%), Query Frame = -2
Query:  255 RFYCPFKDCSAMLVYENDGETVISES-ECPFCHRLFCAQCYVPWHPGVNCEEYQRLNVDERGREDLMVRELAKEKKWSRCPHCKYYVERTEGCPHMTCR-CQFQFCYGC 575
            R +CP   C A+    N+ E  + +  +CP C   FC+ C    H G  C+E   +     G     ++    E    RCP CK Y+ER EGC  M C+ C+  FC+ C
Sbjct:  108 RTWCPSSSCQAVCQL-NEAEVQLPQPVQCPECSLRFCSACRADCHTGQACQEMLPITTFLPGENGSNLKSQEDEAPIKRCPKCKVYIERDEGCAQMMCKNCKHAFCWYC 215          
BLAST of DC887279 vs. ExPASy Swiss-Prot
Match: RBRA_DICDI (Probable E3 ubiquitin-protein ligase rbrA OS=Dictyostelium discoideum GN=rbrA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.767e-12
Identity = 42/162 (25.93%), Postives = 68/162 (41.98%), Query Frame = -2
Query:  228 CPGLDCKSVLEYEACKPVLPKEVLELWGEALCQELIDA-AQRFYCPFKDCSAMLVYENDGETVISESECPFCHRLFCAQCYVPWHPGVNCEEYQRLNVDERGREDLMVRELAKEKKWSRCPHCKYYVERTEGCPHMTCR-----CQFQFCYGCEAEWTQNHS 695
            CP   CK ++  +A K ++  EV E +   + +  +D   Q  +CP   C   +  +          +C F +   C    +  H    C +  +         + +   LA  KK   CP C+  +E+  GC HMTCR     C F+FC+ C   WT++ S
Sbjct:  184 CPAPKCKVIVHQDAFKQIVSPEVFERFNNFILKSYVDDNPQVKWCPAPGCIYSIRCDRKERKEAVNCKCGFQYCFNCNDYEIGDHMPCPCSQVDKWLQKASDESENVTWMLANTKK---CPECRSPIEKNGGCMHMTCRKNAGGCGFEFCWLCRGPWTEHGS 342          
The following BLAST results are available for this feature:
BLAST of DC887279 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
RN217_XENLA1.786e-1639.78Probable E3 ubiquitin-protein ligase RNF217 OS=Xen... [more]
RN217_HUMAN2.333e-1631.55Probable E3 ubiquitin-protein ligase RNF217 OS=Hom... [more]
R144A_XENTR8.298e-1427.92Probable E3 ubiquitin-protein ligase RNF144A OS=Xe... [more]
R144B_HUMAN2.414e-1328.66E3 ubiquitin-protein ligase RNF144B OS=Homo sapien... [more]
R144A_HUMAN2.414e-1326.80Probable E3 ubiquitin-protein ligase RNF144A OS=Ho... [more]
R1441_DANRE5.379e-1325.49Probable E3 ubiquitin-protein ligase RNF144A-A OS=... [more]
R144B_BOVIN2.669e-1230.38E3 ubiquitin-protein ligase RNF144B OS=Bos taurus ... [more]
R144A_MOUSE2.669e-1226.14Probable E3 ubiquitin-protein ligase RNF144A OS=Mu... [more]
R1442_DANRE3.486e-1233.03Probable E3 ubiquitin-protein ligase RNF144A-B OS=... [more]
RBRA_DICDI7.767e-1225.93Probable E3 ubiquitin-protein ligase rbrA OS=Dicty... [more]

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Properties
Property NameValue
Genbank descriptionDC887279 EIC Citrus sinensis cDNA clone EIC0129 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887279 ID=DC887279; Name=DC887279; organism=Citrus sinensis; type=EST; length=708bp
ACACATGTTTCTTACATAAAAGGAAAACAAAAGTGCTTTCCCAAAGATTC
AGCATGAAGCACAACACAAATGATTCACACTTCTTCACAATCTGCTTTGA
GTCTTATAATAATATCACAAAAGAGTCTTTAAAAAGATGCAGTTTAAGAT
TAAATATCAGTAGATAATTCATATTCTTAATATTCTGAATTCGCAGTCCT
ATTAATATGTTAGTTTCTTGAGCAACCACTGTGGTTTTGAGTCCATTCTG
CTTCACATCCATAACAGAACTGGAATTGGCACCTGCAAGTCATATGAGGG
CAACCTTCAGTTCTTTCAACATAGTATTTGCAATGAGGGCACCTACTCCA
TTTCTTCTCCTTAGCAAGCTCTCTCACCATTAAATCTTCCCTGCCTCTTT
CATCAACATTCAGTCTTTGATACTCCTCACAATTAACACCAGGATGCCAT
GGCACATAACACTGAGCACAAAACAATCTATGGCAAAAAGGGCACTCAGA
TTCACTTATAACAGTTTCTCCATCATTTTCGTAGACCAACATGGCTGAAC
AATCCTTGAATGGGCAGTAAAACCTCTGTGCAGCATCAATCAGCTCCTGA
CAAAGAGCTTCCCCCCAAAGCTCAAGCACTTCTTTTGGAAGCACAGGCTT
ACAAGCTTCATATTCCAGGACGGACTTGCAGTCCAGACCAGGGCATGTAA
CCCTACTG
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