DC887279
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of DC887279 vs. ExPASy Swiss-Prot
Match: RN217_XENLA (Probable E3 ubiquitin-protein ligase RNF217 OS=Xenopus laevis GN=rnf217 PE=2 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 1.786e-16 Identity = 37/93 (39.78%), Postives = 53/93 (56.99%), Query Frame = -2 Query: 237 ECPFCHRLFCAQCYVPWHPGVNCEEYQRLNVDERGREDLMVRELAKE-----KKWSRCPHCKYYVERTEGCPHMTC-RCQFQFCYGCEAEWTQ 497 +CP C ++C +C+ PWH GVNC EY+ + D ++R A E + +CP CK +++RTEGC HMTC +C FCY C + Q Sbjct: 114 QCPSCQFIWCFRCHAPWHEGVNCREYK--------KGDKLLRHWANEIEHGQRNAQKCPRCKVHIQRTEGCDHMTCSQCNTNFCYRCGERYRQ 198
BLAST of DC887279 vs. ExPASy Swiss-Prot
Match: RN217_HUMAN (Probable E3 ubiquitin-protein ligase RNF217 OS=Homo sapiens GN=RNF217 PE=2 SV=2) HSP 1 Score: 85.8853 bits (211), Expect = 2.333e-16 Identity = 53/168 (31.55%), Postives = 78/168 (46.43%), Query Frame = -2 Query: 237 VTCPGLDCKSVLEYEACKPVLPKEVLELWGEALCQELIDAAQRFYCPFKDCSAMLVYENDGETVI---SES----ECPFCHRLFCAQCYVPWHPGVNCEEYQRLNVDERGREDLMVRELAKE-----KKWSRCPHCKYYVERTEGCPHMTC-RCQFQFCYGCEAEWTQ 701 + CP +C LE L E + L ID++ + P C ++ G SES +CP C ++C +C+ PWH GVNC+EY+ + D ++R A E + +CP CK +++RTEGC HMTC +C FCY C + Q Sbjct: 10 IKCPITECFEFLEETTVVYNLTHEDSIKYKYFLELGRIDSSTK---PCPQCKHFTTFKKKGHIPTPSRSESKYKIQCPTCQFVWCFKCHSPWHEGVNCKEYK--------KGDKLLRHWASEIEHGQRNAQKCPKCKIHIQRTEGCDHMTCSQCNTNFCYRCGERYRQ 166
BLAST of DC887279 vs. ExPASy Swiss-Prot
Match: R144A_XENTR (Probable E3 ubiquitin-protein ligase RNF144A OS=Xenopus tropicalis GN=rnf144a PE=2 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 8.298e-14 Identity = 43/154 (27.92%), Postives = 70/154 (45.45%), Query Frame = -2 Query: 255 VTCPGLDC--KSVLEYEACKPVLPKEVLELWGEALCQE--LIDAAQRFYCPFKDCSAMLVYENDGETVISESECPFCHRLFCAQCYVPWHPGVNCEEYQRLNVDERGREDLMVRELAKEKKWSRCPHCKYYVERTEGCPHMTCR-CQFQFCYGC 701 ++CP C + L+ + ++ E+++ + + ++ L+D R +CP C A+ + G +C C FC+ C WHPG C E + G + L + RCP CK Y+ER EGC M C+ C+ FC+ C Sbjct: 63 ISCPDASCPKRGHLQENEIECMVAAEIMQKYKKLQFEKEILLDPC-RTWCPSSSCQAVCKLQEKGIQNPQLVQCSACDIEFCSACKANWHPGQGCPENMAITF-LPGDSSSFFKSLEDDVPIKRCPKCKVYIERDEGCAQMMCKNCKHAFCWYC 214
BLAST of DC887279 vs. ExPASy Swiss-Prot
Match: R144B_HUMAN (E3 ubiquitin-protein ligase RNF144B OS=Homo sapiens GN=RNF144B PE=1 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 2.414e-13 Identity = 45/157 (28.66%), Postives = 74/157 (47.13%), Query Frame = -2 Query: 255 SRVTCPGLDCKS--VLEYEACKPVLPKEVLELWGEALCQELIDA-AQRFYCPFKDCSAM--LVYENDGETVISESECPFCHRLFCAQCYVPWHPGVNCEEYQRLNVDERGREDLMVRELAKEKKWSRCPHCKYYVERTEGCPHMTCR-CQFQFCYGC 707 S +TCP + C + L+ ++P + +L+ + + R +CP DC + + + G+ V+ E CP CH FC+ C WH V+C + Q + + R + E +CP C+ Y+ER EGC M C+ C+ FC+ C Sbjct: 71 SPITCPDMVCLNHGTLQEAEIACLVPVDQFQLYQRLKFEREVHLDPYRTWCPVADCQTVCPVASSDPGQPVLVE--CPSCHLKFCSCCKDAWHAEVSCRDSQPIVLPTEHR---ALFGTDAEAPIKQCPVCRVYIERNEGCAQMMCKNCKHTFCWYC 222
BLAST of DC887279 vs. ExPASy Swiss-Prot
Match: R144A_HUMAN (Probable E3 ubiquitin-protein ligase RNF144A OS=Homo sapiens GN=RNF144A PE=1 SV=2) HSP 1 Score: 75.8702 bits (185), Expect = 2.414e-13 Identity = 41/153 (26.80%), Postives = 69/153 (45.10%), Query Frame = -2 Query: 255 VTCPGLDC--KSVLEYEACKPVLPKEVLELWGEALCQ-ELIDAAQRFYCPFKDCSAMLVYENDGETVISESECPFCHRLFCAQCYVPWHPGVNCEEYQRLNVDERGREDLMVRELAKEKKWSRCPHCKYYVERTEGCPHMTCR-CQFQFCYGC 701 ++CP C + L+ + ++ E+++ + + + E++ R +CP C A+ ++ G +C C FC+ C WHPG C E + G + + RCP CK Y+ER EGC M C+ C+ FC+ C Sbjct: 63 ISCPDAACPKQGHLQENEIECMVAAEIMQRYKKLQFEREVLFDPCRTWCPASTCQAVCQLQDVGLQTPQPVQCKACRMEFCSTCKASWHPGQGCPETMPITF-LPGETSAAFKMEEDDAPIKRCPKCKVYIERDEGCAQMMCKNCKHAFCWYC 214
BLAST of DC887279 vs. ExPASy Swiss-Prot
Match: R1441_DANRE (Probable E3 ubiquitin-protein ligase RNF144A-A OS=Danio rerio GN=rnf144aa PE=3 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 5.379e-13 Identity = 39/153 (25.49%), Postives = 68/153 (44.44%), Query Frame = -2 Query: 255 VTCPGLDC--KSVLEYEACKPVLPKEVLELWGEALCQ-ELIDAAQRFYCPFKDCSAMLVYENDGETVISESECPFCHRLFCAQCYVPWHPGVNCEEYQRLNVDERGREDLMVRELAKEKKWSRCPHCKYYVERTEGCPHMTCR-CQFQFCYGC 701 ++CP C + L+ + ++ E+++ + + + E++ R +CP C A+ + + C C FC+ C WHP +C+E + G + + RCP CK Y+ER EGC M C+ C+ FC+ C Sbjct: 63 ISCPDSACPKRGHLQENEIECMVATEIMQRYRKLQFEKEVLLDPSRTWCPSSTCQAVCQLKESDTVLPQLVRCSVCTLEFCSACKASWHPDQDCQENVPITSFLPGESSSFFKADDDDAPIKRCPKCKVYIERDEGCAQMMCKNCKHAFCWYC 215
BLAST of DC887279 vs. ExPASy Swiss-Prot
Match: R144B_BOVIN (E3 ubiquitin-protein ligase RNF144B OS=Bos taurus GN=RNF144B PE=2 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 2.669e-12 Identity = 48/158 (30.38%), Postives = 75/158 (47.47%), Query Frame = -2 Query: 255 SRVTCPGLDCKS--VLEYEACKPVLPKEVLELWGEALCQELIDAAQ-RFYCPFKDCSAM--LVYENDGETVISESECPFCHRLFCAQCYVPWHPGVNCEEYQ-RLNVDERGREDLMVRELAKEKKWSRCPHCKYYVERTEGCPHMTCR-CQFQFCYGC 707 S +TCP + C + L+ ++P + +L+ + + R +CP DC + + + G+ V+ E CP CH FC+ C WH V+C + Q + E G L E K +CP C+ Y+ER EGC M C+ C+ FC+ C Sbjct: 72 SPITCPDMVCLNHGTLQEAEIACLVPVDQFQLYQRLKFEREVHLDPCRTWCPVADCQTVCPVATSDPGQPVLVE--CPSCHLKFCSCCKDAWHAEVSCRDSQPGILPTEHG--TLFGTETDAPIK--QCPVCRVYIERNEGCAQMMCKNCKHTFCWYC 223
BLAST of DC887279 vs. ExPASy Swiss-Prot
Match: R144A_MOUSE (Probable E3 ubiquitin-protein ligase RNF144A OS=Mus musculus GN=Rnf144a PE=1 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 2.669e-12 Identity = 40/153 (26.14%), Postives = 69/153 (45.10%), Query Frame = -2 Query: 255 VTCPGLDC--KSVLEYEACKPVLPKEVLELWGEALCQ-ELIDAAQRFYCPFKDCSAMLVYENDGETVISESECPFCHRLFCAQCYVPWHPGVNCEEYQRLNVDERGREDLMVRELAKEKKWSRCPHCKYYVERTEGCPHMTCR-CQFQFCYGC 701 ++CP C + L+ + ++ E+++ + + + E++ R +CP C A+ ++ G +C C FC+ C WHPG C E + G + + RCP C+ Y+ER EGC M C+ C+ FC+ C Sbjct: 63 ISCPDAACPKQGHLQENEIECMVAAEIMQRYKKLQFEREVLFDPCRTWCPASTCQAVCQLQDIGLQTPQLVQCKACDMEFCSACKARWHPGQGCPETMPITF-LPGETSSAFKMEEGDAPIKRCPKCRVYIERDEGCAQMMCKNCKHAFCWYC 214
BLAST of DC887279 vs. ExPASy Swiss-Prot
Match: R1442_DANRE (Probable E3 ubiquitin-protein ligase RNF144A-B OS=Danio rerio GN=rnf144ab PE=2 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 3.486e-12 Identity = 36/109 (33.03%), Postives = 51/109 (46.79%), Query Frame = -2 Query: 255 RFYCPFKDCSAMLVYENDGETVISES-ECPFCHRLFCAQCYVPWHPGVNCEEYQRLNVDERGREDLMVRELAKEKKWSRCPHCKYYVERTEGCPHMTCR-CQFQFCYGC 575 R +CP C A+ N+ E + + +CP C FC+ C H G C+E + G ++ E RCP CK Y+ER EGC M C+ C+ FC+ C Sbjct: 108 RTWCPSSSCQAVCQL-NEAEVQLPQPVQCPECSLRFCSACRADCHTGQACQEMLPITTFLPGENGSNLKSQEDEAPIKRCPKCKVYIERDEGCAQMMCKNCKHAFCWYC 215
BLAST of DC887279 vs. ExPASy Swiss-Prot
Match: RBRA_DICDI (Probable E3 ubiquitin-protein ligase rbrA OS=Dictyostelium discoideum GN=rbrA PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 7.767e-12 Identity = 42/162 (25.93%), Postives = 68/162 (41.98%), Query Frame = -2 Query: 228 CPGLDCKSVLEYEACKPVLPKEVLELWGEALCQELIDA-AQRFYCPFKDCSAMLVYENDGETVISESECPFCHRLFCAQCYVPWHPGVNCEEYQRLNVDERGREDLMVRELAKEKKWSRCPHCKYYVERTEGCPHMTCR-----CQFQFCYGCEAEWTQNHS 695 CP CK ++ +A K ++ EV E + + + +D Q +CP C + + +C F + C + H C + + + + LA KK CP C+ +E+ GC HMTCR C F+FC+ C WT++ S Sbjct: 184 CPAPKCKVIVHQDAFKQIVSPEVFERFNNFILKSYVDDNPQVKWCPAPGCIYSIRCDRKERKEAVNCKCGFQYCFNCNDYEIGDHMPCPCSQVDKWLQKASDESENVTWMLANTKK---CPECRSPIEKNGGCMHMTCRKNAGGCGFEFCWLCRGPWTEHGS 342 The following BLAST results are available for this feature:
BLAST of DC887279 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 11
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Sequences
The
following sequences are available for this feature:
EST sequence >DC887279 ID=DC887279; Name=DC887279; organism=Citrus sinensis; type=EST; length=708bpback to top |