DC887272

Overview
NameDC887272
Unique NameDC887272
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length679
Libraries
Library NameType
EICcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8509 contig Csv1_Contig8509:480..1161. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC887272 vs. ExPASy Swiss-Prot
Match: ACSL1_MOUSE (Long-chain-fatty-acid--CoA ligase 1 OS=Mus musculus GN=Acsl1 PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.531e-22
Identity = 55/146 (37.67%), Postives = 85/146 (58.22%), Query Frame = -3
Query:  240 DRKKGXYLSFLKENMLRXESIENIYLQCPLTTLIWVYGNSFESFLVAVVVPDRKALEDWAVNHLHEAVDFKSLCENPKARKYVLDELNSTAQKHKLRGFEMLKAVHLEPTPFDIEKDLITPTFKLKRPQLLKYYKDKIDQLYSEAK 677
            DRKK  +    +   +  E IENIYL+      ++V+G S ++FL+AVVVPD ++L  WA     +   F+ LC N    K +LD+L    ++  L+ FE +K + + P  F I+  L+TPT K KRP+L  Y++ +ID+LY+  K
Sbjct:  555 DRKKHIF-KLAQGEYIAPEKIENIYLRSEAVAQVFVHGESLQAFLIAVVVPDVESLPSWAQKRGLQG-SFEELCRNKDINKAILDDLLKLGKEAGLKPFEQVKGIAVHPELFSIDNGLLTPTLKAKRPELRNYFRSQIDELYATIK 698          
BLAST of DC887272 vs. ExPASy Swiss-Prot
Match: ACSL1_CAVPO (Long-chain-fatty-acid--CoA ligase 1 OS=Cavia porcellus GN=ACSL1 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.000e-22
Identity = 52/146 (35.62%), Postives = 85/146 (58.22%), Query Frame = -3
Query:  240 DRKKGXYLSFLKENMLRXESIENIYLQCPLTTLIWVYGNSFESFLVAVVVPDRKALEDWAVNHLHEAVDFKSLCENPKARKYVLDELNSTAQKHKLRGFEMLKAVHLEPTPFDIEKDLITPTFKLKRPQLLKYYKDKIDQLYSEAK 677
            DRKK  +    +   +  E IENIY++      ++V+G S ++FL+A+VVPD ++L  WA     E   F+ LC N   +K +L+++    +   L+ FE ++ + L P  F ++  L+TPT K KRP+L  Y++ +ID+LYS  K
Sbjct:  554 DRKKHIF-KLAQGEYIAPEKIENIYVRSEPVAQVFVHGESLQAFLIAIVVPDAESLASWARKRGFEG-SFEELCRNKDVKKAILEDMVRIGKDSGLKSFEQVRGIALHPELFSVDNGLLTPTMKAKRPELRNYFRSQIDELYSTIK 697          
BLAST of DC887272 vs. ExPASy Swiss-Prot
Match: ACSL1_RAT (Long-chain-fatty-acid--CoA ligase 1 OS=Rattus norvegicus GN=Acsl1 PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.819e-22
Identity = 53/146 (36.30%), Postives = 83/146 (56.85%), Query Frame = -3
Query:  240 DRKKGXYLSFLKENMLRXESIENIYLQCPLTTLIWVYGNSFESFLVAVVVPDRKALEDWAVNHLHEAVDFKSLCENPKARKYVLDELNSTAQKHKLRGFEMLKAVHLEPTPFDIEKDLITPTFKLKRPQLLKYYKDKIDQLYSEAK 677
            DRKK  +    +   +  E IENIYL+      ++V+G S ++FL+A+VVPD + L  WA     +   F+ LC N    K +L+++    +   L+ FE +K + + P  F I+  L+TPT K KRP+L  Y++ +ID+LYS  K
Sbjct:  555 DRKKHIF-KLAQGEYIAPEKIENIYLRSEAVAQVFVHGESLQAFLIAIVVPDVEILPSWAQKRGFQG-SFEELCRNKDINKAILEDMVKLGKNAGLKPFEQVKGIAVHPELFSIDNGLLTPTLKAKRPELRNYFRSQIDELYSTIK 698          
BLAST of DC887272 vs. ExPASy Swiss-Prot
Match: ACSL1_HUMAN (Long-chain-fatty-acid--CoA ligase 1 OS=Homo sapiens GN=ACSL1 PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.819e-22
Identity = 54/146 (36.99%), Postives = 83/146 (56.85%), Query Frame = -3
Query:  240 DRKKGXYLSFLKENMLRXESIENIYLQCPLTTLIWVYGNSFESFLVAVVVPDRKALEDWAVNHLHEAVDFKSLCENPKARKYVLDELNSTAQKHKLRGFEMLKAVHLEPTPFDIEKDLITPTFKLKRPQLLKYYKDKIDQLYSEAK 677
            DRKK  +    +   +  E IENIY++      ++V+G S ++FL+A+VVPD + L  WA     E   F+ LC N   +K +L+++    +   L+ FE +K + L P  F I+  L+TPT K KRP+L  Y++ +ID LYS  K
Sbjct:  554 DRKKHIF-KLAQGEYIAPEKIENIYMRSEPVAQVFVHGESLQAFLIAIVVPDVETLCSWAQKRGFEG-SFEELCRNKDVKKAILEDMVRLGKDSGLKPFEQVKGITLHPELFSIDNGLLTPTMKAKRPELRNYFRSQIDDLYSTIK 697          
BLAST of DC887272 vs. ExPASy Swiss-Prot
Match: ACSL6_HUMAN (Long-chain-fatty-acid--CoA ligase 6 OS=Homo sapiens GN=ACSL6 PE=2 SV=4)

HSP 1 Score: 102.449 bits (254), Expect = 2.211e-21
Identity = 51/143 (35.66%), Postives = 84/143 (58.74%), Query Frame = -3
Query:  249 DRKKGXYLSFLKENMLRXESIENIYLQCPLTTLIWVYGNSFESFLVAVVVPDRKALEDWAVNHLHEAVDFKSLCENPKARKYVLDELNSTAQKHKLRGFEMLKAVHLEPTPFDIEKDLITPTFKLKRPQLLKYYKDKIDQLYS 677
            DRKK  +    +   +  E IENIY++      I+V+G+S ++FLV +VVPD + +  WA     E   +  LC N   +K +L+++    ++  L  FE +KA+H+    F ++  L+TPT K KRP+L +Y+K +I++LYS
Sbjct:  554 DRKKHIF-KLAQGEYVAPEKIENIYIRSQPVAQIYVHGDSLKAFLVGIVVPDPEVMPSWAQKRGIEGT-YADLCTNKDLKKAILEDMVRLGKESGLHSFEQVKAIHIHSDMFSVQNGLLTPTLKAKRPELREYFKKQIEELYS 694          
BLAST of DC887272 vs. ExPASy Swiss-Prot
Match: ACSL5_HUMAN (Long-chain-fatty-acid--CoA ligase 5 OS=Homo sapiens GN=ACSL5 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.772e-21
Identity = 57/142 (40.14%), Postives = 80/142 (56.34%), Query Frame = -3
Query:  252 DRKKGXYLSFLKENMLRXESIENIYLQCPLTTLIWVYGNSFESFLVAVVVPDRKALEDWAVNHLHEAVDFKSLCENPKARKYVLDELNSTAQKHKLRGFEMLKAVHLEPTPFDIEKDLITPTFKLKRPQLLKYYKDKIDQLY 677
            DRKK  +    +   +  E IENIY +      I+V+G S  S LV VVVPD   L  +A   L     F+ LC+N   R+ +L++L    ++  L+ FE +KA+ L P PF IE  L+TPT K KR +L KY++ +ID LY
Sbjct:  539 DRKKNIF-KLAQGEYIAPEKIENIYNRSQPVLQIFVHGESLRSSLVGVVVPDTDVLPSFAAK-LGVKGSFEELCQNQVVREAILEDLQKIGKESGLKTFEQVKAIFLHPEPFSIENGLLTPTLKAKRGELSKYFRTQIDSLY 678          
BLAST of DC887272 vs. ExPASy Swiss-Prot
Match: ACSL6_RAT (Long-chain-fatty-acid--CoA ligase 6 OS=Rattus norvegicus GN=Acsl6 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.097e-20
Identity = 50/143 (34.97%), Postives = 88/143 (61.54%), Query Frame = -3
Query:  249 DRKKGXYLSFLKENMLRXESIENIYLQCPLTTLIWVYGNSFESFLVAVVVPDRKALEDWAVNHLHEAVDFKSLCENPKARKYVLDELNSTAQKHKLRGFEMLKAVHLEPTPFDIEKDLITPTFKLKRPQLLKYYKDKIDQLYS 677
            DRKK  +    +   +  E IENIY++      I+V+G+S ++FLV +VVPD + +  WA     E  +++ LC++ + +K +LD++    ++  L  FE +KA+++    F ++  L+TPT K KRP+L +Y+K +I++LYS
Sbjct:  554 DRKKHIF-KLAQGEYVAPEKIENIYIRSEPVAQIYVHGDSLKAFLVGIVVPDPEVMPCWAQKKGIEG-NYQELCKSKELKKAILDDMVMLGKESGLHSFEQVKAIYIHCDMFSVQNGLLTPTLKAKRPELREYFKKQIEELYS 694          
BLAST of DC887272 vs. ExPASy Swiss-Prot
Match: ACSL6_MOUSE (Long-chain-fatty-acid--CoA ligase 6 OS=Mus musculus GN=Acsl6 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.447e-20
Identity = 49/142 (34.51%), Postives = 84/142 (59.15%), Query Frame = -3
Query:  252 DRKKGXYLSFLKENMLRXESIENIYLQCPLTTLIWVYGNSFESFLVAVVVPDRKALEDWAVNHLHEAVDFKSLCENPKARKYVLDELNSTAQKHKLRGFEMLKAVHLEPTPFDIEKDLITPTFKLKRPQLLKYYKDKIDQLY 677
            DRKK  +    +   +  E IENIY++      I+V+G+S ++FLV +VVPD + +  WA     E   ++ LC   + +K +LD++    ++  L  FE +KA+++    F ++  L+TPT K KRP+L +Y+K +I++LY
Sbjct:  554 DRKKHIF-KLAQGEYVAPEKIENIYIRSEPVAQIYVHGDSLKAFLVGIVVPDPEVMPSWAQKKGIEGT-YQELCMKKELKKAILDDMVMLGKESGLHSFEQVKAIYIHCDMFSVQNGLLTPTLKAKRPELREYFKKQIEELY 693          
BLAST of DC887272 vs. ExPASy Swiss-Prot
Match: ACSL5_RAT (Long-chain-fatty-acid--CoA ligase 5 OS=Rattus norvegicus GN=Acsl5 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.114e-20
Identity = 50/142 (35.21%), Postives = 82/142 (57.75%), Query Frame = -3
Query:  252 DRKKGXYLSFLKENMLRXESIENIYLQCPLTTLIWVYGNSFESFLVAVVVPDRKALEDWAVNHLHEAVDFKSLCENPKARKYVLDELNSTAQKHKLRGFEMLKAVHLEPTPFDIEKDLITPTFKLKRPQLLKYYKDKIDQLY 677
            DRKK  +    +   +  E IEN+Y +      ++V+G S  SFL+ VVVPD ++L  +A   +     F+ LC+N   +K +L++L    ++  L+ FE +K++ + P PF IE  L+TPT K KR +L K+++ +I  LY
Sbjct:  539 DRKKNIF-KLAQGEYIAPEKIENVYSRSRPILQVFVHGESLRSFLIGVVVPDPESLPSFAAK-IGVKGSFEELCQNQCVKKAILEDLQKVGKEGGLKSFEQVKSIFVHPEPFSIENGLLTPTLKAKRVELAKFFQTQIKSLY 678          
BLAST of DC887272 vs. ExPASy Swiss-Prot
Match: FCSB_DICDI (Fatty acyl-CoA synthetase B OS=Dictyostelium discoideum GN=fcsB PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.291e-20
Identity = 50/144 (34.72%), Postives = 86/144 (59.72%), Query Frame = -3
Query:  246 DRKKGXYLSFLKENMLRXESIENIYLQCPLTTLIWVYGNSFESFLVAVVVPDRKALEDWAVNHLHEAVDFKSLCENPKARKYVLDELNSTAQKHKLRGFEMLKAVHLEPTPFDIEKDLITPTFKLKRPQLLKYYKDKIDQLYSE 677
            DRKK  +    +   +  E IE I ++      + +YG+S +S ++A++ P  ++  +WA +   +  D K +C+N    K VLD++    +K  L GFE+ KA+HL P  F  + +L+TP+FKLKR ++ KY++D+I +LYS+
Sbjct:  530 DRKKNIF-KLSQGEYVAVEKIETIVVKSEYVEQVCIYGDSQKSCVIAIIHPHPESCSEWAGSKKTDK-DIKEICKNQDFIKVVLDDIIKNCKKSGLHGFEIPKAIHLTPEAFSDQNNLLTPSFKLKRHEIKKYFEDEIKKLYSK 671          
The following BLAST results are available for this feature:
BLAST of DC887272 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
ACSL1_MOUSE1.531e-2237.67Long-chain-fatty-acid--CoA ligase 1 OS=Mus musculu... [more]
ACSL1_CAVPO2.000e-2235.62Long-chain-fatty-acid--CoA ligase 1 OS=Cavia porce... [more]
ACSL1_RAT5.819e-2236.30Long-chain-fatty-acid--CoA ligase 1 OS=Rattus norv... [more]
ACSL1_HUMAN5.819e-2236.99Long-chain-fatty-acid--CoA ligase 1 OS=Homo sapien... [more]
ACSL6_HUMAN2.211e-2135.66Long-chain-fatty-acid--CoA ligase 6 OS=Homo sapien... [more]
ACSL5_HUMAN3.772e-2140.14Long-chain-fatty-acid--CoA ligase 5 OS=Homo sapien... [more]
ACSL6_RAT1.097e-2034.97Long-chain-fatty-acid--CoA ligase 6 OS=Rattus norv... [more]
ACSL6_MOUSE5.447e-2034.51Long-chain-fatty-acid--CoA ligase 6 OS=Mus musculu... [more]
ACSL5_RAT7.114e-2035.21Long-chain-fatty-acid--CoA ligase 5 OS=Rattus norv... [more]
FCSB_DICDI9.291e-2034.72Fatty acyl-CoA synthetase B OS=Dictyostelium disco... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionDC887272 EIC Citrus sinensis cDNA clone EIC0118 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC887272 ID=DC887272; Name=DC887272; organism=Citrus sinensis; type=EST; length=679bp
AGAGGGAGTAACATGATTCCCTGAATCAGAAATAACATGATTCCTTGAAT
CAGAAATCTTCAAACAATCTTATTCATGTACAAACAAGAACAATGATCAA
CATTGCAGTTTTTCTTTACCATGGTTCTCTTGTAAAGGTTGAACATGAGT
CGGAAGGAATTTTCTAGAAGCATCTGCAGATCTGTATATCCGAATATTGG
TTTTTCTATCTTCGGAAATTGCTCTCACGGCTTTGATCCCTTTGCTTCAC
TGTACAATTGATCAATCTTGTCCTTGTAGTATTTAAGCAGCTGTGGCCTC
TTCAGTTTAAATGTCGGAGTAATCAGATCCTTCTCAATGTCGAAGGGAGT
TGGTTCGAGATGAACGGCTTTTAACATCTCAAAACCTCTAAGTTTGTGTT
TCTGGGCAGTGCTGTTGAGCTCATCTAGAACGTATTTCCTTGCCTTAGGG
TTCTCACACAATGATTTAAAATCAACAGCCTCATGAAGATGGTTTACCGC
CCAATCCTCAAGTGCCTTCCTATCAGGGACCACAACAGCTACAAGAAATG
ATTCGAAACTGTTCCCATAGACCCATATCAATGTTGTCAAGGGGCATTGT
AAGTATATGTTCTCAATGCTCTCAANCCGCAACATATTCTCCTTGAGAAA
GCTTAAATANANTCCTTTTTTTCTGTCAA
back to top