CX676588

Overview
NameCX676588
Unique NameCX676588
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length847
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX676588_ssr101 microsatellite CX676588_ssr101:101..110. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5592 contig Csv1_Contig5592:1..847. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX676588 vs. ExPASy Swiss-Prot
Match: ERG_ARATH (GTP-binding protein ERG OS=Arabidopsis thaliana GN=ERG PE=1 SV=2)

HSP 1 Score: 187.193 bits (474), Expect = 9.991e-47
Identity = 91/110 (82.73%), Postives = 99/110 (90.00%), Query Frame = 2
Query:  260 AVQRPWSEDPLTMSEEVMKNISLEVVRERLLDHVHQEIPYSIEHRLIDWKDLRDGSLRIEQHLITNKLSQRKILVGKNGSKIGRIGVEANEELRSIFKRDVHLILQVRLK 589
            AV++PW ED  TMSEEV+KNISLEVVRERLLDHVHQEIPY +EHRL+DWK+LRDGSLRIEQHLIT KLSQRKILVGK G KIGRIG+EANEELR I  R VHLILQV+LK
Sbjct:  328 AVKKPWEEDAFTMSEEVLKNISLEVVRERLLDHVHQEIPYGLEHRLVDWKELRDGSLRIEQHLITPKLSQRKILVGKGGCKIGRIGIEANEELRRIMNRKVHLILQVKLK 437          
BLAST of CX676588 vs. ExPASy Swiss-Prot
Match: ERG_ANTMA (GTP-binding protein ERG OS=Antirrhinum majus GN=ERG PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.907e-46
Identity = 90/110 (81.82%), Postives = 100/110 (90.91%), Query Frame = 2
Query:  260 AVQRPWSEDPLTMSEEVMKNISLEVVRERLLDHVHQEIPYSIEHRLIDWKDLRDGSLRIEQHLITNKLSQRKILVGKNGSKIGRIGVEANEELRSIFKRDVHLILQVRLK 589
            AV+RPW EDP  MSEEVMKNISLEVVRE+LLD+VHQEIPY IEHRL+ WK+LRDGSLRIEQH IT K+SQRKILVGK GSKIG IG+EANEELRSIFKR+VHLIL V++K
Sbjct:  314 AVKRPWDEDPFAMSEEVMKNISLEVVREKLLDYVHQEIPYGIEHRLMGWKELRDGSLRIEQHFITPKMSQRKILVGKKGSKIGTIGIEANEELRSIFKRNVHLILMVKVK 423          
BLAST of CX676588 vs. ExPASy Swiss-Prot
Match: ERA_OLICO (GTP-binding protein era homolog OS=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) GN=era PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 9.121e-16
Identity = 38/98 (38.78%), Postives = 66/98 (67.35%), Query Frame = 2
Query:  296 MSEEVMKNISLEVVRERLLDHVHQEIPYSIEHRLIDWKDLRDGSLRIEQHLITNKLSQRKILVGKNGSKIGRIGVEANEELRSIFKRDVHLILQVRLK 589
            MS+  +++++ E+ RE++  ++HQE+PY        WK++R+GS+RIEQ +   + SQRKI++GK G+ I  IG +A +E+  I  + VHL L V+++
Sbjct:  191 MSDAPLRHLAAEITREKIYRNLHQELPYQSTVETESWKEMRNGSVRIEQTIFVERDSQRKIVLGKGGATIKAIGADARKEIAEIVGQPVHLFLFVKVR 288          
BLAST of CX676588 vs. ExPASy Swiss-Prot
Match: ERA_BRASB (GTP-binding protein era homolog OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=era PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.032e-15
Identity = 38/98 (38.78%), Postives = 63/98 (64.29%), Query Frame = 2
Query:  296 MSEEVMKNISLEVVRERLLDHVHQEIPYSIEHRLIDWKDLRDGSLRIEQHLITNKLSQRKILVGKNGSKIGRIGVEANEELRSIFKRDVHLILQVRLK 589
            MS+  M++++ E+ RE++  H+HQE+PY        W + +DGS+RIEQ +   + SQRKI++GK G+ I  IG ++ +E+  I    VHL L V+++
Sbjct:  191 MSDAPMRHLAAEITREKIYSHLHQELPYQSTVETDSWTERKDGSIRIEQTIFVERDSQRKIVLGKGGATIKSIGAQSRKEIAEITGVPVHLFLFVKVR 288          
BLAST of CX676588 vs. ExPASy Swiss-Prot
Match: ERA_BRASO (GTP-binding protein era homolog OS=Bradyrhizobium sp. (strain ORS278) GN=era PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 3.466e-15
Identity = 38/98 (38.78%), Postives = 62/98 (63.27%), Query Frame = 2
Query:  296 MSEEVMKNISLEVVRERLLDHVHQEIPYSIEHRLIDWKDLRDGSLRIEQHLITNKLSQRKILVGKNGSKIGRIGVEANEELRSIFKRDVHLILQVRLK 589
            MS+  M++++ E+ RE++  H+HQE+PY        W +  DGS+RIEQ +   + SQRKI++GK G+ I  IG ++ +E+  I    VHL L V+++
Sbjct:  190 MSDAPMRHLAAEITREKIYSHLHQELPYQSTVETDSWTERNDGSIRIEQTIFVERDSQRKIVLGKGGATIKSIGAQSRKEIAEITGVPVHLFLFVKVR 287          
BLAST of CX676588 vs. ExPASy Swiss-Prot
Match: ERA_AGRT5 (GTP-binding protein era homolog OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=era PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.317e-14
Identity = 39/106 (36.79%), Postives = 64/106 (60.38%), Query Frame = 2
Query:  272 PWSEDPLTMSEEVMKNISLEVVRERLLDHVHQEIPYSIEHRLIDWKDLRDGSLRIEQHLITNKLSQRKILVGKNGSKIGRIGVEANEELRSIFKRDVHLILQVRLK 589
            PW      +S+  M+ ++ E+ RE+L   +HQE+PY+       W++ +DGS+RIEQ +   + SQ+KI +GKNG  I  I   + +EL  I ++ VHL L V+++
Sbjct:  192 PWYYPEDQISDLPMRQLAAEITREKLFLRLHQELPYASHVETEKWEERKDGSVRIEQVIYVERDSQKKIALGKNGDAIKAISTASRKELSEILEQPVHLFLFVKVR 297          
BLAST of CX676588 vs. ExPASy Swiss-Prot
Match: ERA_SINMW (GTP-binding protein era homolog OS=Sinorhizobium medicae (strain WSM419) GN=era PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.005e-14
Identity = 38/106 (35.85%), Postives = 63/106 (59.43%), Query Frame = 2
Query:  272 PWSEDPLTMSEEVMKNISLEVVRERLLDHVHQEIPYSIEHRLIDWKDLRDGSLRIEQHLITNKLSQRKILVGKNGSKIGRIGVEANEELRSIFKRDVHLILQVRLK 589
            PW      +S+  M+ ++ E+ RE+L   +HQE+PY+       W++ +DGS+RIEQ +   + SQ+KI +GK G  I  I   A +E+  I ++ VHL L V+++
Sbjct:  186 PWYYPEDQISDLPMRQLAAEITREKLFLRLHQELPYASHVETEKWEERKDGSVRIEQVIYVERDSQKKIALGKGGEAIKAISTAARKEISEILEQPVHLFLFVKVR 291          
BLAST of CX676588 vs. ExPASy Swiss-Prot
Match: ERA_RHIME (GTP-binding protein era homolog OS=Rhizobium meliloti GN=era PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 5.005e-14
Identity = 38/106 (35.85%), Postives = 63/106 (59.43%), Query Frame = 2
Query:  272 PWSEDPLTMSEEVMKNISLEVVRERLLDHVHQEIPYSIEHRLIDWKDLRDGSLRIEQHLITNKLSQRKILVGKNGSKIGRIGVEANEELRSIFKRDVHLILQVRLK 589
            PW      +S+  M+ ++ E+ RE+L   +HQE+PY+       W++ +DGS+RIEQ +   + SQ+KI +GK G  I  I   A +E+  I ++ VHL L V+++
Sbjct:  189 PWYYPEDQISDLPMRQLAAEITREKLFLRLHQELPYASHVETEKWEERKDGSVRIEQVIYVERDSQKKIALGKGGEAIKAISTAARKEISEILEQPVHLFLFVKVR 294          
BLAST of CX676588 vs. ExPASy Swiss-Prot
Match: ERA_RICAH (GTP-binding protein era homolog OS=Rickettsia akari (strain Hartford) GN=era PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.537e-14
Identity = 48/142 (33.80%), Postives = 78/142 (54.93%), Query Frame = 2
Query:  209 LLNHHPDS--------------GYLMAFYA*AVQRPW--SEDPLTMSEEVMKNISLEVVRERLLDHVHQEIPYSIEHRLIDWKDLRDGSLRIEQHLITNKLSQRKILVGKNGSKIGRIGVEANEELRSIFKRDVHLILQVRL 586
            L+ +HPDS              G L      A   PW  +ED +T  +  M+ I+ E+ RE+L  ++ QE+PY +  +   W+DL+D S++I Q +I ++ S + I++GKNGSKI  IG ++  ++   F   VHL L V++
Sbjct:  138 LIGNHPDSLFFPISALSGKNINGLLEYITGKAQIAPWLYAEDDIT--DLPMRFIAAEITREQLFFNLQQELPYKLTVQTEKWEDLKDKSVKINQVIIVSRASYKTIILGKNGSKIREIGSKSRMQMERFFGFPVHLFLFVKV 277          
BLAST of CX676588 vs. ExPASy Swiss-Prot
Match: ERA_BRAJA (GTP-binding protein era homolog OS=Bradyrhizobium japonicum GN=era PE=3 SV=3)

HSP 1 Score: 77.0258 bits (188), Expect = 1.456e-13
Identity = 36/98 (36.73%), Postives = 62/98 (63.27%), Query Frame = 2
Query:  296 MSEEVMKNISLEVVRERLLDHVHQEIPYSIEHRLIDWKDLRDGSLRIEQHLITNKLSQRKILVGKNGSKIGRIGVEANEELRSIFKRDVHLILQVRLK 589
            MS+  M++++ E+ RE++   +HQE+PY        W++ +D S+RIEQ +   + SQRKI++GK G+ I  IG ++ +E+  I    VHL L V+++
Sbjct:  191 MSDAPMRHLAAEITREKIYRKLHQELPYQSTVETDKWEERKDKSVRIEQTIFVERESQRKIVLGKGGATIKSIGADSRKEISEILGVPVHLFLFVKVR 288          
The following BLAST results are available for this feature:
BLAST of CX676588 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
ERG_ARATH9.991e-4782.73GTP-binding protein ERG OS=Arabidopsis thaliana GN... [more]
ERG_ANTMA2.907e-4681.82GTP-binding protein ERG OS=Antirrhinum majus GN=ER... [more]
ERA_OLICO9.121e-1638.78GTP-binding protein era homolog OS=Oligotropha car... [more]
ERA_BRASB2.032e-1538.78GTP-binding protein era homolog OS=Bradyrhizobium ... [more]
ERA_BRASO3.466e-1538.78GTP-binding protein era homolog OS=Bradyrhizobium ... [more]
ERA_AGRT51.317e-1436.79GTP-binding protein era homolog OS=Agrobacterium t... [more]
ERA_SINMW5.005e-1435.85GTP-binding protein era homolog OS=Sinorhizobium m... [more]
ERA_RHIME5.005e-1435.85GTP-binding protein era homolog OS=Rhizobium melil... [more]
ERA_RICAH8.537e-1433.80GTP-binding protein era homolog OS=Rickettsia akar... [more]
ERA_BRAJA1.456e-1336.73GTP-binding protein era homolog OS=Bradyrhizobium ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_70H07_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-70H07-O14-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX676588 ID=CX676588; Name=CX676588; organism=Citrus sinensis; type=EST; length=847bp
TATGACATCGGGACTGAAGGGTGCTGGATTAAAAGCTCTTACTCAATATT
TGATGGAGCAGGCATGTCTTCATCATCTTCACTTCATCTTGATGATATGA
GTGTGTGTGTTTTTATGTGGTGTTTCTGGTATATGATTATAATGCAGTTT
CTTTTAAATTTTTCTAGGTCTTTGACTAGTTTCTAATCTTAAGCAACAAA
TGTCTGCTCTTCTAAATCATCATCCTGACTCTGGCTATTTGATGGCTTTT
TATGCTTAGGCAGTTCAAAGACCTTGGTCTGAAGATCCATTAACCATGAG
TGAAGAAGTTATGAAGAACATTTCATTGGAAGTCGTCCGGGAGAGGTTAC
TGGACCATGTACATCAGGAAATTCCTTACAGTATTGAACATCGGTTGATA
GACTGGAAGGATTTACGAGATGGCTCCCTTAGGATTGAACAACACTTGAT
TACCAACAAGCTAAGCCAGCGAAAAATTCTCGTGGGGAAGAATGGCTCTA
AAATAGGGAGAATAGGTGTTGAAGCTAATGAAGAGCTAAGGTCCATCTTT
AAAAGGGATGTGCATCTAATCCTCCAGGTTAGACTAAAGACTTAAGTGAT
GGGCTCAACAAATGAATCAATTTTTGAGAAGTGCTTCATCTCGCACTGTA
CCATCTGATTGTGTATATATGAAGAAGGCCTATCAGGTGCACTTCTACGG
TAAACATCTGGTTTCTTTCCCTTGCAAAGGTTTTTTAGAGTTGAGCTTTA
ATTCAGGAGTTTAAATTGGACACCTAGGCGTTGTAACACAAATGCCCCAA
GAGCCCCTTATTTTAGGGGGGGAAAAAATCTGCATTATCTTTTCTTG
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