CX676581

Overview
NameCX676581
Unique NameCX676581
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length696
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1118 contig Csv1_Contig1118:57..752. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX676581 vs. ExPASy Swiss-Prot
Match: SC61A_DICDI (Protein transport protein Sec61 subunit alpha OS=Dictyostelium discoideum GN=sec61a PE=3 SV=1)

HSP 1 Score: 358.607 bits (919), Expect = 1.819e-98
Identity = 169/232 (72.84%), Postives = 202/232 (87.07%), Query Frame = 1
Query:    1 LGSGISLFIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSGHSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDSN 696
            +GSGISLFIATNICE+I+WK FSPTT++ G+G EFEGAVIALFHLL+T+ +KV AL+EAFYRQNLPNITNLLATVL+F++V+YFQGF+V LPV+S    GQQG YPIKLFYTSN+PIILQSALVSNLYFISQLLYR++  N  VNL G W+ SEYS   IPV GL YY+++P +++ + A+PFHALFY+ FMLT+CALFSK WIEVSGSSARDVAKQLK+QQM M GHRD++
Sbjct:  176 IGSGISLFIATNICETIVWKTFSPTTVSVGKGTEFEGAVIALFHLLLTRNDKVRALKEAFYRQNLPNITNLLATVLIFMVVIYFQGFRVDLPVKSTRVSGQQGTYPIKLFYTSNIPIILQSALVSNLYFISQLLYRRFPDNILVNLFGAWRTSEYSQQMIPVSGLTYYISSPNNMSAVLADPFHALFYITFMLTSCALFSKVWIEVSGSSARDVAKQLKDQQMTMKGHRDTS 407          
BLAST of CX676581 vs. ExPASy Swiss-Prot
Match: S61A2_DANRE (Protein transport protein Sec61 subunit alpha-like 2 OS=Danio rerio GN=sec61al2 PE=2 SV=3)

HSP 1 Score: 335.495 bits (859), Expect = 1.649e-91
Identity = 160/234 (68.38%), Postives = 194/234 (82.91%), Query Frame = 1
Query:    1 LGSGISLFIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSG--HSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDSN 696
            LGSGISLFIATNICE+I+WKAFSPTT+N+GRG EFEGA+IALFHLL T+ +KV ALREAFYRQNLPN+ NL+AT+ VF +V+YFQGF+V LP++S   RGQ   YPIKLFYTSN+PIILQSALVSNLY ISQ+L  ++SGNF VNLLG W ++   G   + PVGGL YY++ P S   +  +P HA+ Y++FML +CA FSKTWIEVSGSSA+DVAKQLKEQQMVM GHR+++
Sbjct:  175 LGSGISLFIATNICETIVWKAFSPTTVNTGRGTEFEGAIIALFHLLATRTDKVRALREAFYRQNLPNLMNLIATIFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQSALVSNLYVISQMLSTRFSGNFLVNLLGTWSDTSTGGPARAYPVGGLCYYLSPPESFGTVLEDPIHAIIYIIFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRETS 408          
BLAST of CX676581 vs. ExPASy Swiss-Prot
Match: S61A1_DANRE (Protein transport protein Sec61 subunit alpha-like 1 OS=Danio rerio GN=sec61al1 PE=2 SV=3)

HSP 1 Score: 335.495 bits (859), Expect = 1.649e-91
Identity = 162/234 (69.23%), Postives = 194/234 (82.91%), Query Frame = 1
Query:    1 LGSGISLFIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSG--HSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDSN 696
            LGSGISLFIATNICE+I+WKAFSPTT+N+GRG EFEGA+IALFHLL T+ +KV ALREAFYRQNLPN+ NL+ATV VF +V+YFQGF+V LP++S   RGQ   YPIKLFYTSN+PIILQSALVSNLY ISQ+L  ++SGNF VNLLG W ++   G   + PVGGL YY++ P S   +  +P HA+ Y+VFML +CA FSKTWIEVSGSSA+DVAKQLKEQQMVM GHR+++
Sbjct:  175 LGSGISLFIATNICETIVWKAFSPTTVNTGRGTEFEGAIIALFHLLATRTDKVRALREAFYRQNLPNLMNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQSALVSNLYVISQMLSTRFSGNFLVNLLGTWSDTSSGGPARAYPVGGLCYYLSPPESFGSVLDDPVHAVIYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRETS 408          
BLAST of CX676581 vs. ExPASy Swiss-Prot
Match: S61A2_MOUSE (Protein transport protein Sec61 subunit alpha isoform 2 OS=Mus musculus GN=Sec61a2 PE=2 SV=3)

HSP 1 Score: 335.109 bits (858), Expect = 2.154e-91
Identity = 164/234 (70.09%), Postives = 195/234 (83.33%), Query Frame = 1
Query:    1 LGSGISLFIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSG--HSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDSN 696
            LGSGISLFIATNICE+I+WKAFSPTTIN+GRG EFEGAVIALFHLL T+ +KV ALREAFYRQNLPN+ NL+ATV VF +V+YFQGF+V LP++S   RGQ  +YPIKLFYTSN+PIILQSALVSNLY ISQ+L  ++SGNF VNLLG+W +    G   S PVGGL YY++ P S+  +  +P H + Y++FML +CA FSKTWIEVSGSSA+DVAKQLKEQQMVM GHRD++
Sbjct:  175 LGSGISLFIATNICETIVWKAFSPTTINTGRGTEFEGAVIALFHLLATRTDKVRALREAFYRQNLPNLMNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVISQMLSVRFSGNFLVNLLGQWADVSGGGPARSYPVGGLCYYLSPPESMGAIFEDPVHVVVYIIFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRDTS 408          
BLAST of CX676581 vs. ExPASy Swiss-Prot
Match: S61A2_HUMAN (Protein transport protein Sec61 subunit alpha isoform 2 OS=Homo sapiens GN=SEC61A2 PE=2 SV=3)

HSP 1 Score: 335.109 bits (858), Expect = 2.154e-91
Identity = 164/234 (70.09%), Postives = 195/234 (83.33%), Query Frame = 1
Query:    1 LGSGISLFIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSG--HSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDSN 696
            LGSGISLFIATNICE+I+WKAFSPTTIN+GRG EFEGAVIALFHLL T+ +KV ALREAFYRQNLPN+ NL+ATV VF +V+YFQGF+V LP++S   RGQ  +YPIKLFYTSN+PIILQSALVSNLY ISQ+L  ++SGNF VNLLG+W +    G   S PVGGL YY++ P S+  +  +P H + Y++FML +CA FSKTWIEVSGSSA+DVAKQLKEQQMVM GHRD++
Sbjct:  175 LGSGISLFIATNICETIVWKAFSPTTINTGRGTEFEGAVIALFHLLATRTDKVRALREAFYRQNLPNLMNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVISQMLSVRFSGNFLVNLLGQWADVSGGGPARSYPVGGLCYYLSPPESMGAIFEDPVHVVVYIIFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRDTS 408          
BLAST of CX676581 vs. ExPASy Swiss-Prot
Match: S61A2_BOVIN (Protein transport protein Sec61 subunit alpha isoform 2 OS=Bos taurus GN=SEC61A2 PE=2 SV=3)

HSP 1 Score: 335.109 bits (858), Expect = 2.154e-91
Identity = 164/234 (70.09%), Postives = 195/234 (83.33%), Query Frame = 1
Query:    1 LGSGISLFIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSG--HSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDSN 696
            LGSGISLFIATNICE+I+WKAFSPTTIN+GRG EFEGAVIALFHLL T+ +KV ALREAFYRQNLPN+ NL+ATV VF +V+YFQGF+V LP++S   RGQ  +YPIKLFYTSN+PIILQSALVSNLY ISQ+L  ++SGNF VNLLG+W +    G   S PVGGL YY++ P S+  +  +P H + Y++FML +CA FSKTWIEVSGSSA+DVAKQLKEQQMVM GHRD++
Sbjct:  175 LGSGISLFIATNICETIVWKAFSPTTINTGRGTEFEGAVIALFHLLATRTDKVRALREAFYRQNLPNLMNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVISQMLSVRFSGNFLVNLLGQWADVSGGGPARSYPVGGLCYYLSPPESMGAIFEDPVHVVVYIIFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRDTS 408          
BLAST of CX676581 vs. ExPASy Swiss-Prot
Match: SC61A_GADOC (Protein transport protein Sec61 subunit alpha OS=Gadus ogac GN=sec61a PE=2 SV=3)

HSP 1 Score: 333.569 bits (854), Expect = 6.266e-91
Identity = 162/234 (69.23%), Postives = 192/234 (82.05%), Query Frame = 1
Query:    1 LGSGISLFIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSG--HSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDSN 696
            LGSGISLFIATNICE+I+WKAFSPTT+N+GRG EFEGA+IALFHLL T+ +KV ALREAFYRQNLPN+ NL+ATV VF +V+YFQGF+V LP++S   RGQ   YPIKLFYTSN+PIILQSALVSNLY ISQ+L  ++SGNF VNLLG W ++   G   + PVGGL YY + P S   +  +P HA  Y+VFML +CA FSKTWIEVSGSSA+DVAKQLKEQQMVM GHR+++
Sbjct:  175 LGSGISLFIATNICETIVWKAFSPTTVNTGRGTEFEGAIIALFHLLATRTDKVRALREAFYRQNLPNLMNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQSALVSNLYVISQMLSTRFSGNFLVNLLGTWSDTSTGGPARAYPVGGLCYYFSPPESFGSVLDDPVHASIYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRETS 408          
BLAST of CX676581 vs. ExPASy Swiss-Prot
Match: S61A1_ONCMY (Protein transport protein Sec61 subunit alpha isoform A OS=Oncorhynchus mykiss GN=sec61aa PE=2 SV=3)

HSP 1 Score: 333.569 bits (854), Expect = 6.266e-91
Identity = 161/234 (68.80%), Postives = 193/234 (82.48%), Query Frame = 1
Query:    1 LGSGISLFIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSG--HSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDSN 696
            LGSGISLFIATNICE+I+WKAFSPTT+N+GRG EFEGA+IALFHLL T+ +KV ALREAFYRQNLPN+ NL+ATV VF +V+YFQGF+V LP++S   RGQ   YPIKLFYTSN+PIILQSALVSNLY ISQ+L  ++SGNF VNLLG W ++   G   + PVGGL Y+++ P S   +  +P HA  Y+VFML +CA FSKTWIEVSGSSA+DVAKQLKEQQMVM GHR+++
Sbjct:  175 LGSGISLFIATNICETIVWKAFSPTTVNTGRGTEFEGAIIALFHLLATRTDKVRALREAFYRQNLPNLLNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQSALVSNLYVISQMLSTRFSGNFLVNLLGTWSDTSTGGPARAYPVGGLCYFLSPPESFGSVLDDPIHAAIYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMGGHRETS 408          
BLAST of CX676581 vs. ExPASy Swiss-Prot
Match: SC61A_PAGBO (Protein transport protein Sec61 subunit alpha OS=Pagothenia borchgrevinki GN=sec61a PE=2 SV=3)

HSP 1 Score: 332.798 bits (852), Expect = 1.069e-90
Identity = 162/234 (69.23%), Postives = 192/234 (82.05%), Query Frame = 1
Query:    1 LGSGISLFIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSG--HSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDSN 696
            LGSGISLFIATNICE+I+WKAFSPTT+N+GRG EFEGA+IALFHLL T+ +KV ALREAFYRQNLPNI NL+ATV VF +V+YFQGF+V LP++S   RGQ   YPIKLFYTSN+PIILQSALVSNLY ISQ+L  ++SGNF VNLLG W ++   G   + PV GL YY++ P S   +  +P HA  Y+VFML +CA FSKTWIEVSGSSA+DVAKQLKEQQMVM GHR+++
Sbjct:  175 LGSGISLFIATNICETIVWKAFSPTTVNTGRGTEFEGAIIALFHLLATRTDKVRALREAFYRQNLPNILNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQSALVSNLYVISQMLSTRFSGNFLVNLLGTWSDATSGGPARAYPVAGLCYYLSPPESFGSVLDDPVHAAIYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRETS 408          
BLAST of CX676581 vs. ExPASy Swiss-Prot
Match: SC61A_NOTAN (Protein transport protein Sec61 subunit alpha OS=Notothenia angustata GN=sec61a PE=2 SV=3)

HSP 1 Score: 332.798 bits (852), Expect = 1.069e-90
Identity = 162/234 (69.23%), Postives = 192/234 (82.05%), Query Frame = 1
Query:    1 LGSGISLFIATNICESIIWKAFSPTTINSGRGAEFEGAVIALFHLLITKQNKVGALREAFYRQNLPNITNLLATVLVFLIVVYFQGFKVVLPVRSKNARGQQGAYPIKLFYTSNMPIILQSALVSNLYFISQLLYRKYSGNFFVNLLGKWKESEYSG--HSIPVGGLAYYVTAPASLADMAANPFHALFYLVFMLTACALFSKTWIEVSGSSARDVAKQLKEQQMVMPGHRDSN 696
            LGSGISLFIATNICE+I+WKAFSPTT+N+GRG EFEGA+IALFHLL T+ +KV ALREAFYRQNLPNI NL+ATV VF +V+YFQGF+V LP++S   RGQ   YPIKLFYTSN+PIILQSALVSNLY ISQ+L  ++SGNF VNLLG W ++   G   + PV GL YY++ P S   +  +P HA  Y+VFML +CA FSKTWIEVSGSSA+DVAKQLKEQQMVM GHR+++
Sbjct:  175 LGSGISLFIATNICETIVWKAFSPTTVNTGRGTEFEGAIIALFHLLATRTDKVRALREAFYRQNLPNILNLIATVFVFAVVIYFQGFRVDLPIKSARYRGQYNTYPIKLFYTSNIPIILQSALVSNLYVISQMLSTRFSGNFLVNLLGTWSDATSGGPARAYPVAGLCYYLSPPESFGSVLDDPVHAAIYIVFMLGSCAFFSKTWIEVSGSSAKDVAKQLKEQQMVMRGHRETS 408          
The following BLAST results are available for this feature:
BLAST of CX676581 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
SC61A_DICDI1.819e-9872.84Protein transport protein Sec61 subunit alpha OS=D... [more]
S61A2_DANRE1.649e-9168.38Protein transport protein Sec61 subunit alpha-like... [more]
S61A1_DANRE1.649e-9169.23Protein transport protein Sec61 subunit alpha-like... [more]
S61A2_MOUSE2.154e-9170.09Protein transport protein Sec61 subunit alpha isof... [more]
S61A2_HUMAN2.154e-9170.09Protein transport protein Sec61 subunit alpha isof... [more]
S61A2_BOVIN2.154e-9170.09Protein transport protein Sec61 subunit alpha isof... [more]
SC61A_GADOC6.266e-9169.23Protein transport protein Sec61 subunit alpha OS=G... [more]
S61A1_ONCMY6.266e-9168.80Protein transport protein Sec61 subunit alpha isof... [more]
SC61A_PAGBO1.069e-9069.23Protein transport protein Sec61 subunit alpha OS=P... [more]
SC61A_NOTAN1.069e-9069.23Protein transport protein Sec61 subunit alpha OS=N... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_70H02_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-70H02-O4-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX676581 ID=CX676581; Name=CX676581; organism=Citrus sinensis; type=EST; length=696bp
TTGGGCTCTGGGATCTCCCTTTTCATAGCCACTAACATTTGTGAAAGCAT
TATTTGGAAAGCTTTTAGCCCCACAACCATAAACAGTGGCCGGGGAGCTG
AATTCGAGGGTGCTGTTATTGCTCTGTTTCATCTGCTGATAACCAAGCAA
AACAAAGTTGGGGCTCTTCGAGAGGCTTTCTATCGGCAAAACCTTCCCAA
TATTACTAATTTGCTTGCTACAGTCCTCGTATTCCTTATTGTTGTCTACT
TTCAAGGTTTCAAAGTGGTGTTGCCCGTGAGATCAAAAAATGCCCGTGGG
CAACAGGGTGCTTATCCAATTAAGCTATTCTACACATCCAACATGCCTAT
CATTCTCCAATCTGCACTTGTCTCAAATCTGTATTTCATCTCTCAGTTGC
TCTACAGGAAGTACAGTGGCAATTTCTTTGTTAATCTGTTAGGGAAGTGG
AAGGAATCTGAATATTCTGGCCACTCTATTCCAGTTGGTGGCCTAGCTTA
TTATGTCACTGCACCAGCAAGCTTGGCTGATATGGCAGCCAATCCTTTCC
ATGCTCTGTTCTACCTGGTTTTTATGCTTACTGCTTGTGCTCTTTTCTCG
AAGACTTGGATTGAAGTTTCAGGGTCTTCTGCCCGGGATGTGGCCAAGCA
GCTTAAGGAGCAACAAATGGTGATGCCTGGACATAGAGACTCAAAT
back to top