CX676576

Overview
NameCX676576
Unique NameCX676576
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length762
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5590 contig Csv1_Contig5590:1..763. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX676576 vs. ExPASy Swiss-Prot
Match: RBSC_SOLTU (Ribulose bisphosphate carboxylase small chain 2C, chloroplastic OS=Solanum tuberosum GN=RBCS-2C PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 2.008e-48
Identity = 85/149 (57.05%), Postives = 115/149 (77.18%), Query Frame = 2
Query:  317 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFL 760
            + GLK T+   +  K ++  +S   SNG + RCM+ W PIN KK+E LSYLP LSD+ + KE++Y+LK GW+PCLEF+ E G+V+REN+K PGYYDGRYWTMWKLPMFGC D++Q+L E++E KKAYP A+IR + F+N +Q QC+SF+
Sbjct:   26 FTGLKSTASFPVSRKQNLDITS-IASNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISFI 173          
BLAST of CX676576 vs. ExPASy Swiss-Prot
Match: RBSB_SOLTU (Ribulose bisphosphate carboxylase small chain 2B, chloroplastic OS=Solanum tuberosum GN=RBCS-2B PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 2.008e-48
Identity = 85/149 (57.05%), Postives = 115/149 (77.18%), Query Frame = 2
Query:  317 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFL 760
            + GLK T+   +  K ++  +S   SNG + RCM+ W PIN KK+E LSYLP LSD+ + KE++Y+LK GW+PCLEF+ E G+V+REN+K PGYYDGRYWTMWKLPMFGC D++Q+L E++E KKAYP A+IR + F+N +Q QC+SF+
Sbjct:   26 FTGLKSTASFPVSRKQNLDITS-IASNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISFI 173          
BLAST of CX676576 vs. ExPASy Swiss-Prot
Match: RBS3_SOLTU (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Solanum tuberosum GN=RBCS-3 PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 2.008e-48
Identity = 84/149 (56.38%), Postives = 112/149 (75.17%), Query Frame = 2
Query:  317 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFL 760
            + GLK  +   +  K++    +   SNG + RCM+ W PIN KK+E LSYLP LSD+ + KE++Y+LK GW+PCLEF+ E G+V+REN K PGYYDGRYWTMWKLPMFGC D++Q+L E+QE KKAYP A+IR + F+N +Q QC+SF+
Sbjct:   26 FTGLKSAASFPVTKKNNNVDITSLASNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENHKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKKAYPQAWIRIIGFDNVRQVQCISFI 174          
BLAST of CX676576 vs. ExPASy Swiss-Prot
Match: RBS_MARPA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Marchantia paleacea GN=RBCS PE=2 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 3.425e-48
Identity = 83/130 (63.85%), Postives = 99/130 (76.15%), Query Frame = 2
Query:  374 WSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAY-PNAYIRCLAFNNQKQGQCMSFL 760
            W +KT +NGS+  CM+ W P NN KFE LSYLP LS D++AK+IDY++K GW PC+EFD  G V RE S MPGYYDGRYWTMWKLPMFGC DS+ +L EI+ECKK Y    YIRCL F+N +Q QC SF+
Sbjct:   45 WQTKTQTNGSRVSCMQVWEPYNNLKFETLSYLPPLSQDALAKQIDYVIKSGWAPCIEFDVQGTVTREGSTMPGYYDGRYWTMWKLPMFGCTDSASVLREIEECKKLYGKKCYIRCLGFDNTRQVQCASFI 174          
BLAST of CX676576 vs. ExPASy Swiss-Prot
Match: RBS1_SOLTU (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Solanum tuberosum GN=RBCS-1 PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 3.425e-48
Identity = 84/149 (56.38%), Postives = 114/149 (76.51%), Query Frame = 2
Query:  317 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFL 760
            + GLK  +   +  K ++  +S   SNG + RCM+ W PIN KK+E LSYLP L+D+ + KE++Y+LK GW+PCLEF+ E G+V+REN K PGYYDGRYWTMWKLPMFGC D++Q+L E+QECKK+YP A+IR + F+N +Q QC+SF+
Sbjct:   27 FTGLKSAATFPVSRKQNLDITS-IASNGGRVRCMQVWPPINMKKYETLSYLPDLTDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENHKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQECKKSYPQAWIRIIGFDNVRQVQCISFI 174          
BLAST of CX676576 vs. ExPASy Swiss-Prot
Match: RBSA_SOLTU (Ribulose bisphosphate carboxylase small chain 2A, chloroplastic OS=Solanum tuberosum GN=RBCS-2A PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 7.631e-48
Identity = 84/149 (56.38%), Postives = 114/149 (76.51%), Query Frame = 2
Query:  317 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFL 760
            + GLK  +   +  K ++  +S   SNG + RCM+ W PIN KK+E LSYLP LSD+ + KE++Y+LK GW+PCLEF+ E G+V+REN+K PGYYDGRYWTMWKLPMFGC D++Q+L E++E KKAYP A+IR + F+N +Q QC+SF+
Sbjct:   26 FTGLKSAASFPVSRKQNLDITS-IASNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISFI 173          
BLAST of CX676576 vs. ExPASy Swiss-Prot
Match: RBS_MAIZE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Zea mays GN=RBCS PE=1 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 9.966e-48
Identity = 92/165 (55.76%), Postives = 115/165 (69.70%), Query Frame = 2
Query:  266 PKKMSASIFTAPVAGSGYLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFL 760
            P  M AS  TA      + GLK T  A LPV    + S   VSNG + RCM+ W    NKKFE LSYLP LS D + K++DY+L+ GWIPCLEF +VG+V+RENS  P YYDGRYWTMWKLPMFGCND++Q+  E+QE  K+YP+A+ R + F+N KQ QC+SF+
Sbjct:    3 PTVMMASSATAVAP---FQGLKST--ASLPVARRSSRSLGNVSNGGRIRCMQVWPAYGNKKFETLSYLPPLSTDDLLKQVDYLLRNGWIPCLEFSKVGFVYRENSTSPCYYDGRYWTMWKLPMFGCNDATQVYKELQEAIKSYPDAFHRVIGFDNIKQTQCVSFI 162          
BLAST of CX676576 vs. ExPASy Swiss-Prot
Match: RBS_LARLA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Larix laricina GN=RBCS PE=3 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.302e-47
Identity = 84/155 (54.19%), Postives = 108/155 (69.68%), Query Frame = 2
Query:  311 SGYLGLK-----PTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFL 760
            S + GLK     P+SK +        W  KT SNGS+ RCM+ W P  NKKFE LSYLP L+ + + KE++Y+LK  W+PCLEF+E G + R     PGYYDGRYW MWKLPMFGC ++SQ+LNE+ EC KAYPNA+IR + F+N +Q QC+SF+
Sbjct:   30 SAFTGLKSMAQFPSSKTMSNA--GAEWEQKTTSNGSRVRCMQVWPPYANKKFETLSYLPRLTPEQLVKEVEYLLKNKWVPCLEFEEDGEIKRVYGNSPGYYDGRYWVMWKLPMFGCTEASQVLNEVNECAKAYPNAFIRVIGFDNVRQVQCISFI 182          
BLAST of CX676576 vs. ExPASy Swiss-Prot
Match: RBS3_FLAPR (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Flaveria pringlei GN=RBCS3 PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.302e-47
Identity = 82/149 (55.03%), Postives = 112/149 (75.17%), Query Frame = 2
Query:  317 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFL 760
            + GLK  S A  PV   +   S   SNG + +CMK W P+  K++E LSYLP+L++  +AKE+DY+L+  W+PCLEF+ E G+V+REN++ PGYYDGRYWTMWKLPMFGC DS+Q++ E+QECKK YP A+IR + F+N +Q QC+SF+
Sbjct:   20 FTGLK--SNAAFPVTKKVNDFSTLPSNGGRVQCMKVWPPLGKKRYETLSYLPNLTESQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFI 166          
BLAST of CX676576 vs. ExPASy Swiss-Prot
Match: RBS7_FLAPR (Ribulose bisphosphate carboxylase small chain 7, chloroplastic OS=Flaveria pringlei GN=RBCS7 PE=2 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.700e-47
Identity = 82/149 (55.03%), Postives = 112/149 (75.17%), Query Frame = 2
Query:  317 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFL 760
            + GLK  S A  PV   +   S   SNG + +CMK W P+  K++E LSYLP+L++  +AKE+DY+L+  W+PCLEF+ E G+V+REN++ PGYYDGRYWTMWKLPMFGC DS+Q++ E+QECKK YP A+IR + F+N +Q QC+SF+
Sbjct:   20 FTGLK--SNAAFPVTKKVNDFSTLASNGGRVQCMKVWPPLGKKRYETLSYLPNLTEVQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFI 166          
The following BLAST results are available for this feature:
BLAST of CX676576 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 144
Match NameE-valueIdentityDescription
RBSC_SOLTU2.008e-4857.05Ribulose bisphosphate carboxylase small chain 2C, ... [more]
RBSB_SOLTU2.008e-4857.05Ribulose bisphosphate carboxylase small chain 2B, ... [more]
RBS3_SOLTU2.008e-4856.38Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS_MARPA3.425e-4863.85Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_SOLTU3.425e-4856.38Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBSA_SOLTU7.631e-4856.38Ribulose bisphosphate carboxylase small chain 2A, ... [more]
RBS_MAIZE9.966e-4855.76Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_LARLA1.302e-4754.19Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS3_FLAPR1.302e-4755.03Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS7_FLAPR1.700e-4755.03Ribulose bisphosphate carboxylase small chain 7, c... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_70G11_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-70G11-M22-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX676576 ID=CX676576; Name=CX676576; organism=Citrus sinensis; type=EST; length=762bp
GGGTGGTGATGAAACCAAAGCCAAAGTGCTTCTGTAAACACTCCACTTTC
CTTATACAAATCCTCTTCTCTTTCGAGCTTTGATCTTCCCTAATCCCTTA
ACAAACCATACATCACTTCACAAACACCTAGGCTAACTCCTTTTGTCCTT
TACTTGAACGGTTTCCATTGCCTTGAGAACTAAAATAATTAATTATTACT
CTTTTGCTATCTCGGTCTTAAGTGTTGCCTCTCTCTTTTAACTATCTTGT
TTCTTGAAACAGTGCCCGAAGAAGATGTCTGCAAGCATCTTTACAGCTCC
AGTTGCTGGTTCTGGCTATCTTGGCCTAAAACCCACATCGAAAGCTTTGC
TTCCAGTTAAGGATTCCATTGCATGGAGCAGCAAAACAGTCTCAAACGGT
TCAAAAACTCGATGCATGAAGACATGGAATCCAATCAATAACAAAAAGTT
TGAGGCCCTCTCCTACCTGCCATCGCTCTCGGATGATTCAATTGCAAAGG
AGATTGACTACATGCTCAAAAAGGGATGGATCCCTTGCCTTGAATTTGAT
GAGGTGGGATATGTGCACAGGGAGAATAGCAAAATGCCAGGGTATTATGA
TGGGAGGTATTGGACAATGTGGAAGTTGCCAATGTTTGGATGCAATGATT
CATCTCAAATCCTGAATGAAATACAAGAGTGCAAAAAAGCATACCCAAAT
GCTTATATTCGCTGCTTGGCATTTAACAATCAGAAACAGGGTCAGTGCAT
GTCCTTTCTCAT
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