CX676575

Overview
NameCX676575
Unique NameCX676575
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length774
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBSC_SOLTU (Ribulose bisphosphate carboxylase small chain 2C, chloroplastic OS=Solanum tuberosum GN=RBCS-2C PE=3 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 2.413e-49
Identity = 87/153 (56.86%), Postives = 116/153 (75.82%), Query Frame = -2
Query:  285 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFFIQKP 740
            + GLK T+   +  K ++  +S   SNG + RCM+ W PIN KK+E LSYLP LSD+ + KE++Y+LK GW+PCLEF+ E G+V+REN+K PGYYDGRYWTMWKLPMFGC D++Q+L E++E KKAYP A+IR + F+N +Q QC+SF   KP
Sbjct:   26 FTGLKSTASFPVSRKQNLDITS-IASNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKP 177          
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBSB_SOLTU (Ribulose bisphosphate carboxylase small chain 2B, chloroplastic OS=Solanum tuberosum GN=RBCS-2B PE=3 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 2.413e-49
Identity = 87/153 (56.86%), Postives = 116/153 (75.82%), Query Frame = -2
Query:  285 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFFIQKP 740
            + GLK T+   +  K ++  +S   SNG + RCM+ W PIN KK+E LSYLP LSD+ + KE++Y+LK GW+PCLEF+ E G+V+REN+K PGYYDGRYWTMWKLPMFGC D++Q+L E++E KKAYP A+IR + F+N +Q QC+SF   KP
Sbjct:   26 FTGLKSTASFPVSRKQNLDITS-IASNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKP 177          
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS3_SOLTU (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Solanum tuberosum GN=RBCS-3 PE=3 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 2.413e-49
Identity = 86/153 (56.21%), Postives = 113/153 (73.86%), Query Frame = -2
Query:  285 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFFIQKP 740
            + GLK  +   +  K++    +   SNG + RCM+ W PIN KK+E LSYLP LSD+ + KE++Y+LK GW+PCLEF+ E G+V+REN K PGYYDGRYWTMWKLPMFGC D++Q+L E+QE KKAYP A+IR + F+N +Q QC+SF   KP
Sbjct:   26 FTGLKSAASFPVTKKNNNVDITSLASNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENHKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKP 178          
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS_MARPA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Marchantia paleacea GN=RBCS PE=2 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 3.152e-49
Identity = 84/134 (62.69%), Postives = 101/134 (75.37%), Query Frame = -2
Query:  285 WSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAY-PNAYIRCLAFNNQKQGQCMSFFIQKP 683
            W +KT +NGS+  CM+ W P NN KFE LSYLP LS D++AK+IDY++K GW PC+EFD  G V RE S MPGYYDGRYWTMWKLPMFGC DS+ +L EI+ECKK Y    YIRCL F+N +Q QC SF + +P
Sbjct:   45 WQTKTQTNGSRVSCMQVWEPYNNLKFETLSYLPPLSQDALAKQIDYVIKSGWAPCIEFDVQGTVTREGSTMPGYYDGRYWTMWKLPMFGCTDSASVLREIEECKKLYGKKCYIRCLGFDNTRQVQCASFIVHQP 178          
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS_LARLA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Larix laricina GN=RBCS PE=3 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 4.116e-49
Identity = 86/159 (54.09%), Postives = 110/159 (69.18%), Query Frame = -2
Query:  285 SGYLGLK-----PTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFFIQKP 746
            S + GLK     P+SK +        W  KT SNGS+ RCM+ W P  NKKFE LSYLP L+ + + KE++Y+LK  W+PCLEF+E G + R     PGYYDGRYW MWKLPMFGC ++SQ+LNE+ EC KAYPNA+IR + F+N +Q QC+SF + KP
Sbjct:   30 SAFTGLKSMAQFPSSKTMSNA--GAEWEQKTTSNGSRVRCMQVWPPYANKKFETLSYLPRLTPEQLVKEVEYLLKNKWVPCLEFEEDGEIKRVYGNSPGYYDGRYWVMWKLPMFGCTEASQVLNEVNECAKAYPNAFIRVIGFDNVRQVQCISFIVHKP 186          
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS1_SOLTU (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Solanum tuberosum GN=RBCS-1 PE=3 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 4.116e-49
Identity = 86/153 (56.21%), Postives = 115/153 (75.16%), Query Frame = -2
Query:  285 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFFIQKP 740
            + GLK  +   +  K ++  +S   SNG + RCM+ W PIN KK+E LSYLP L+D+ + KE++Y+LK GW+PCLEF+ E G+V+REN K PGYYDGRYWTMWKLPMFGC D++Q+L E+QECKK+YP A+IR + F+N +Q QC+SF   KP
Sbjct:   27 FTGLKSAATFPVSRKQNLDITS-IASNGGRVRCMQVWPPINMKKYETLSYLPDLTDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENHKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQECKKSYPQAWIRIIGFDNVRQVQCISFIAYKP 178          
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS_PINTH (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Pinus thunbergii GN=RBCS PE=2 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 9.170e-49
Identity = 82/157 (52.23%), Postives = 113/157 (71.97%), Query Frame = -2
Query:  285 SGYLGLKPTSKALLPVKDSIA---WSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFDEVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFFIQKP 746
            S + GLK T++     K S A   W  KT SNG + RCM+ W P  N KFE LSYLP+L+++ + KE++Y+L+  W+PCLEFD  G + R+ ++ PGYYDGRYW MWKLPMFGC ++SQ++NE++EC KAYP A+IR + F+N +Q QC+SF + KP
Sbjct:   14 SAFTGLKSTAQFPSSFKMSNAAAEWEQKTTSNGGRVRCMQVWPPFGNPKFETLSYLPTLTEEQLVKEVEYLLRNKWVPCLEFDLEGSISRKYNRSPGYYDGRYWVMWKLPMFGCTEASQVINEVRECAKAYPKAFIRVIGFDNVRQVQCISFIVHKP 170          
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBSA_SOLTU (Ribulose bisphosphate carboxylase small chain 2A, chloroplastic OS=Solanum tuberosum GN=RBCS-2A PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 9.170e-49
Identity = 86/153 (56.21%), Postives = 115/153 (75.16%), Query Frame = -2
Query:  285 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFFIQKP 740
            + GLK  +   +  K ++  +S   SNG + RCM+ W PIN KK+E LSYLP LSD+ + KE++Y+LK GW+PCLEF+ E G+V+REN+K PGYYDGRYWTMWKLPMFGC D++Q+L E++E KKAYP A+IR + F+N +Q QC+SF   KP
Sbjct:   26 FTGLKSAASFPVSRKQNLDITS-IASNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLLKEVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKP 177          
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS3_FLAPR (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Flaveria pringlei GN=RBCS3 PE=2 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.198e-48
Identity = 84/153 (54.90%), Postives = 113/153 (73.86%), Query Frame = -2
Query:  285 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFFIQKP 740
            + GLK  S A  PV   +   S   SNG + +CMK W P+  K++E LSYLP+L++  +AKE+DY+L+  W+PCLEF+ E G+V+REN++ PGYYDGRYWTMWKLPMFGC DS+Q++ E+QECKK YP A+IR + F+N +Q QC+SF   KP
Sbjct:   20 FTGLK--SNAAFPVTKKVNDFSTLPSNGGRVQCMKVWPPLGKKRYETLSYLPNLTESQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKP 170          
BLAST of CX676575 vs. ExPASy Swiss-Prot
Match: RBS7_FLAPR (Ribulose bisphosphate carboxylase small chain 7, chloroplastic OS=Flaveria pringlei GN=RBCS7 PE=2 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.564e-48
Identity = 84/153 (54.90%), Postives = 113/153 (73.86%), Query Frame = -2
Query:  285 YLGLKPTSKALLPVKDSIAWSSKTVSNGSKTRCMKTWNPINNKKFEALSYLPSLSDDSIAKEIDYMLKKGWIPCLEFD-EVGYVHRENSKMPGYYDGRYWTMWKLPMFGCNDSSQILNEIQECKKAYPNAYIRCLAFNNQKQGQCMSFFIQKP 740
            + GLK  S A  PV   +   S   SNG + +CMK W P+  K++E LSYLP+L++  +AKE+DY+L+  W+PCLEF+ E G+V+REN++ PGYYDGRYWTMWKLPMFGC DS+Q++ E+QECKK YP A+IR + F+N +Q QC+SF   KP
Sbjct:   20 FTGLK--SNAAFPVTKKVNDFSTLASNGGRVQCMKVWPPLGKKRYETLSYLPNLTEVQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKP 170          
The following BLAST results are available for this feature:
BLAST of CX676575 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 148
Match NameE-valueIdentityDescription
RBSC_SOLTU2.413e-4956.86Ribulose bisphosphate carboxylase small chain 2C, ... [more]
RBSB_SOLTU2.413e-4956.86Ribulose bisphosphate carboxylase small chain 2B, ... [more]
RBS3_SOLTU2.413e-4956.21Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS_MARPA3.152e-4962.69Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_LARLA4.116e-4954.09Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_SOLTU4.116e-4956.21Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS_PINTH9.170e-4952.23Ribulose bisphosphate carboxylase small chain, chl... [more]
RBSA_SOLTU9.170e-4956.21Ribulose bisphosphate carboxylase small chain 2A, ... [more]
RBS3_FLAPR1.198e-4854.90Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS7_FLAPR1.564e-4854.90Ribulose bisphosphate carboxylase small chain 7, c... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_70G11_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-70G11-M22-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX676575 ID=CX676575; Name=CX676575; organism=Citrus sinensis; type=EST; length=774bp
TTTTTTTTTTTTTTTTTGCCAGTGAAAGCCAGCATAGGATGCAATGATGC
ATATAGAGAGTCAAAACTGCTACAAGAAAAGTTATAATAAAACGTCTGGT
GTTTCCAACCAGCTGCGCCGAAAGAAGAACCTTTAAACTGTGTGCTAATC
ACATGATGTCACACAGATTATGATCAAGTCTTTATTATTTAAAACGAAAA
GCATCTCCATAATCAAACAAGCTGCATTATAGAATTCAACCAAACAAAGT
GAGAGAAGTGCTTTTAGGTGCTAGTGGTGGTGGTTGGTTTCTGGATGAAA
AAGGACATGCACTGACCCTGTTTCTGATTGTTAAATGCCAAGCAGCGAAT
ATAAGCATTTGGGTATGCTTTTTTGCACTCTTGTATTTCATTCAGGATTT
GAGATGAATCATTGCATCCAAACATTGGCAACTTCCACATTGTCCAATAC
CTCCCATCATAATACCCTGGCATTTTGCTATTCTCCCTGTGCACATATCC
CACCTCATCAAATTCAAGGCAAGGGATCCATCCCTTTTTGAGCATGTAGT
CAATCTCCTTTGCAATTGAATCATCCGAGAGCGATGGCAGGTAGGAGAGG
GCCTCAAACTTTTTGTTATTGATTGGATTCCATGTCTTCATGCATCGAGT
TTTTGAACCGTTTGAGACTGTTTTGCTGCTCCATGCAATGGAATCCTTAA
CTGGAAGCAAAGCTTTCGATGTGGGTTTTAGGCCAAGATAGCCAGAACCA
GCAACTGGAGCTGTAAAGATGCTT
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