CX676574

Overview
NameCX676574
Unique NameCX676574
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length791
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9591 contig Csv1_Contig9591:936..1726. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX676574 vs. ExPASy Swiss-Prot
Match: IF5_PHAVU (Eukaryotic translation initiation factor 5 OS=Phaseolus vulgaris GN=EIF5 PE=2 SV=1)

HSP 1 Score: 275.789 bits (704), Expect = 1.912e-73
Identity = 151/255 (59.22%), Postives = 187/255 (73.33%), Query Frame = 2
Query:   38 DGTTKATSSRRKANVSDEDHSSPPH--------GKEEVDDD---VQWQTDTSLEAARQRIQEQLSAATADMVMLSTDESENKAKATSKAVSSPKGSHAENGNSQSHENLVDELKANLQKSITGMQLQTILGSLSGSAQEKMTALFEALFNGVEKGFSKEVVKKKNFLGAAVAEDEGLQLLLLRAIEAFCGKSSSYATKEVALVLKALYDSDVLEEEYIVQWYQEGLKGGSKNSQIWKNAKPFIEWLQSAESDSEE 769
            DGT K+T S++K + SDED  SP H         K+E DDD   VQW TDTSL+A+RQRI+EQLSA TADMVML+TDE E K KA S      +   ++NGNS+++  +V E+KANL+K     +L + L +L   AQEKM+AL EALF G EKGF +E +KKKN+  AAVAE EG Q+LLL AIE FC K +S A KEVALVLK LYD+DVLEEE IV WYQ+GLKG +KNS+IWKNA+PFI+WLQ+AES+S+E
Sbjct:  194 DGTAKSTISKKKGSGSDEDRRSPTHKQIEEKEEAKDEDDDDDDGVQWLTDTSLDASRQRIKEQLSAVTADMVMLTTDEPEKKKKAASN-----QNGGSQNGNSKNYGTVVAEVKANLKKGFGASELLSHLAALPVPAQEKMSALVEALFEGTEKGFGRETLKKKNYFAAAVAE-EGSQILLLHAIEEFCCKPNSNALKEVALVLKTLYDADVLEEEAIVLWYQKGLKGDNKNSKIWKNAQPFIDWLQNAESESDE 442          
BLAST of CX676574 vs. ExPASy Swiss-Prot
Match: IF5_MAIZE (Eukaryotic translation initiation factor 5 OS=Zea mays GN=EIF5 PE=2 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 7.055e-60
Identity = 135/259 (52.12%), Postives = 169/259 (65.25%), Query Frame = 2
Query:   38 DGTTKATSSRRK-ANVSDEDHSSPPH--------GKEEVDDDVQWQTDTSLEAARQRIQEQLSAATADMVMLSTDESENKAKATSKAVSSPKGSHAENGNSQ-------SHENLVDELKANLQKSITGMQLQTILGSLSGSAQEKMTALFEALFNGVEKGFSKEVVKKKNFLGAAVAEDEGLQLLLLRAIEAFCGKSSSYATKEVALVLKALYDSDVLEEEYIVQWYQEGLKGGSKNSQIWKNAKPFIEWLQSAESDSE 766
            D T K    +   A  SDEDHSS P           ++ DDDVQWQTDTS+EAA+QR+QEQLSAATA+MVMLST+E+E K K  +    S  GS  E  N +        +E L+ ++KA+L  + T  QL+ +L S +   Q+ M A  EALF GV KGF+KEVVK K +L  AV  DEG Q LL++AIEAF GK +  A KEV +VLKALYD D+L+EE IV WY + +  G K+SQ+ KNAKPF+EWLQSAESD E
Sbjct:  191 DSTAKGLKKKATTATGSDEDHSSSPTRSHDGDKAAADDDDDDVQWQTDTSIEAAKQRMQEQLSAATAEMVMLSTEETEKKMKQPTHKDGSTNGSAKEIPNDKPAVTKPSPYEELIGDIKASLGSAPTPSQLKAVLASSTLPPQDVMNAPLEALFGGVGKGFTKEVVKNKKYLAVAV-PDEGAQTLLVQAIEAFGGKCNPEALKEVPVVLKALYDGDILDEETIVDWYNDAVAAG-KDSQVVKNAKPFVEWLQSAESDEE 447          
BLAST of CX676574 vs. ExPASy Swiss-Prot
Match: IF5Z_ARATH (Probable eukaryotic translation initiation factor 5-2 OS=Arabidopsis thaliana GN=At1g77840 PE=2 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 4.732e-56
Identity = 123/247 (49.80%), Postives = 162/247 (65.59%), Query Frame = 2
Query:   62 SRRKANVSDEDHSSPPHGK--------EEVDDDVQWQTDTSLEAARQRIQEQLSAATADMVMLSTDESENKAKATSKAVSSPKGSHAENGNSQSHE-NLVDELKANLQKSITGMQLQTILGSLSGSAQEKMTALFEALFNGVEKGFSKEVVKKKNFLGAAVA-EDEGLQLLLLRAIEAFCGKSSSY-ATKEVALVLKALYDSDVLEEEYIVQWYQEGLKGGSKNSQIWKNAKPFIEWLQSAESDSEE 769
            S+   N S ++  SP H +        E+ DD V+WQTDTS EAA +R+ EQLSA TA+MVMLS  E E K    SK+     G+  +  N    E NLV ++K  L+K      L++ + SLS   Q+ M ALF ALF+GV KGF+KEV KKKN+L AA   +++G Q+ LL +I  FCGK+ +  A KEVALVLKALYD D++EEE ++ WY++GL G  K+S +WKN KPF+EWLQSAES+SEE
Sbjct:  193 SKTSKNHSSDEDISPKHDENALEVDEDEDDDDGVEWQTDTSREAAEKRMMEQLSAKTAEMVMLSAMEVEEKKAPKSKS----NGNVVKTENPPPQEKNLVQDMKEYLKKGSPISALKSFISSLSEPPQDIMDALFNALFDGVGKGFAKEVTKKKNYLAAAATMQEDGSQMHLLNSIGTFCGKNGNEEALKEVALVLKALYDQDIIEEEVVLDWYEKGLTGADKSSPVWKNVKPFVEWLQSAESESEE 435          
BLAST of CX676574 vs. ExPASy Swiss-Prot
Match: IF5Y_ARATH (Probable eukaryotic translation initiation factor 5-1 OS=Arabidopsis thaliana GN=At1g36730 PE=2 SV=1)

HSP 1 Score: 215.312 bits (547), Expect = 3.067e-55
Identity = 129/256 (50.39%), Postives = 163/256 (63.67%), Query Frame = 2
Query:   53 ATSSRRKANVSDEDHSSPPHG---------KEEVDDDVQWQTDTSLEAARQRIQEQLSAATADMVMLSTDESENKAKATSKAVSSPKGSHAENGNSQ----SHENLVDELKANLQKSITGMQLQTILGSLSGSAQEKMTALFEALFNGVEKGFSKEVVKKKNFLGAAVAEDE----GLQLLLLRAIEAFCGKSSSYATKEVALVLKALYDSDVLEEEYIVQWYQEGLKGGSKNSQIWKNAKPFIEWLQSAESDSEE 769
            AT+   K  VS +   SPP            EE DDDVQWQTDTS EAA +R++EQLSA TA+MVMLST E +       KA   P+  H ENGNS+    +HE LV+E+K  L    +  QL+T L S S + QEKM ALF ALF G  KGF+KEV+KKK +L A +   E      Q+ LL  IE+FC K+S+ A KEVALV+K LYD D+L+E+ IV+WY +G+    K+S + KN  PFIEWLQ+AES+SEE
Sbjct:  191 ATTGTSKDKVSKKKDHSPPRSLSDENDQADSEEDDDDVQWQTDTSREAAEKRMKEQLSAVTAEMVMLSTVEEKKPVAEVKKA---PEQVH-ENGNSKIPENAHEKLVNEIKELLSSGSSPTQLKTALASNSANPQEKMDALFSALFGGTGKGFAKEVIKKKKYLLALMMMQEEAGAPAQMGLLNGIESFCMKASAEAAKEVALVIKGLYDEDILDEDVIVEWYNKGV----KSSPVLKNVTPFIEWLQNAESESEE 438          
BLAST of CX676574 vs. ExPASy Swiss-Prot
Match: IF5_DICDI (Eukaryotic translation initiation factor 5 OS=Dictyostelium discoideum GN=eif5 PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.224e-13
Identity = 59/245 (24.08%), Postives = 109/245 (44.49%), Query Frame = 2
Query:   44 TTKATSSRRKAN---VSDEDHSSPPHGKEEVDDDVQWQTDTSLEAARQRIQEQLSAATADMVMLSTDESENKAKATSKAVSSPKGSHAENGNSQSHENLVDELKANLQKSITGMQLQTILGSLSGSAQEKMTALFEALFNGVEKGFSKEVVKKKNFLGAAVAEDEGLQLLLLRAIEAFCGKSSSYATKEVALVLKALYDSDVLEEEYIVQWYQEGLKGGSKNSQIWKNAKPFIEWLQSAESDSEE 769
            +TK+T     A    +  E  S      ++ +DDV W TDTS +AA +R ++ +  +T+ ++ +  D S     A  +     +    +   S    ++   L+ N        +L ++       +     A  EAL    E   + + VK +  L   +++    +L +L   E  C K  +   K +  +LK L+D+ +L EE I++WY +     +K+  + K  K FI WL++AE + E+
Sbjct:  147 STKSTHDEALAQQPQIKKEKKSKKKKDDDDEEDDVVWFTDTSEKAAEERKKKAIGDSTSAVISMMADISVEPQSAKEEQDEDDEQEEGQEKESDPVSSISSFLETNPADQELMEKLDSVQEEFGLRSSATSKAAIEALCKNAEN--TIKFVKTQTALLKKISKRRDGKLGILLGFEELCVKDET-LLKSIQGILKNLFDAGILTEENILKWYHQ----KAKSKVVIKACKDFIAWLETAEEEEED 384          
The following BLAST results are available for this feature:
BLAST of CX676574 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
IF5_PHAVU1.912e-7359.22Eukaryotic translation initiation factor 5 OS=Phas... [more]
IF5_MAIZE7.055e-6052.12Eukaryotic translation initiation factor 5 OS=Zea ... [more]
IF5Z_ARATH4.732e-5649.80Probable eukaryotic translation initiation factor ... [more]
IF5Y_ARATH3.067e-5550.39Probable eukaryotic translation initiation factor ... [more]
IF5_DICDI2.224e-1324.08Eukaryotic translation initiation factor 5 OS=Dict... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_70G10_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-70G10-M20-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX676574 ID=CX676574; Name=CX676574; organism=Citrus sinensis; type=EST; length=791bp
AAAGAAAGAGGTCAAGAAGAAGGCTTCCTCTTCAAAGGATGGCACTACAA
AAGCCACTTCCTCGAGGAGAAAGGCCAATGTTTCTGATGAGGACCACTCG
TCACCACCACACGGTAAGGAAGAGGTTGATGATGATGTTCAATGGCAAAC
TGATACCTCACTAGAGGCAGCTCGTCAGCGCATCCAAGAGCAATTGAGTG
CTGCGACGGCTGATATGGTTATGCTCTCTACGGATGAGTCAGAGAATAAG
GCTAAAGCAACCAGTAAAGCAGTTAGTAGTCCAAAAGGTTCCCATGCTGA
GAATGGGAACTCACAGTCCCACGAAAATCTTGTTGATGAGTTGAAAGCAA
ATCTGCAGAAAAGTATTACTGGGATGCAATTGCAAACTATTCTGGGATCT
CTCTCTGGATCTGCTCAGGAAAAGATGACTGCGCTGTTTGAGGCACTTTT
TAATGGCGTTGAGAAAGGATTTTCCAAGGAAGTTGTCAAGAAGAAGAACT
TCCTTGGTGCTGCTGTTGCTGAGGATGAGGGTTTGCAGTTGCTTCTGCTC
CGAGCAATTGAGGCATTCTGTGGGAAGTCAAGCTCATATGCGACAAAGGA
AGTGGCTTTGGTTCTGAAGGCTCTGTATGACTCTGATGTGTTGGAGGAAG
AGTATATAGTGCAATGGTATCAAGAGGGGCTGAAAGGAGGCAGCAAAAAC
TCCCAGATTTGGAAAAATGCCAAGCCTTTTATCGAGTGGCTTCAGAGTGC
TGAGTCGGATTCTGAAGAGTAATGAGTGAATTTTTCTTTTT
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