CX676573

Overview
NameCX676573
Unique NameCX676573
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length758
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-3cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX676573 vs. ExPASy Swiss-Prot
Match: RL23A_TOBAC (60S ribosomal protein L23a OS=Nicotiana tabacum GN=RPL23A PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.317e-19
Identity = 47/50 (94.00%), Postives = 48/50 (96.00%), Query Frame = -3
Query:  208 RKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDALDVANKIGII 357
            +KIKDAVKKMYDIQ KKVNTLIRPDGTKKAYVRLTPD DALDVANKIGII
Sbjct:  105 KKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154          
BLAST of CX676573 vs. ExPASy Swiss-Prot
Match: RL23A_DAUCA (60S ribosomal protein L23a OS=Daucus carota GN=RPL23A PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.317e-19
Identity = 47/50 (94.00%), Postives = 48/50 (96.00%), Query Frame = -3
Query:  208 RKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDALDVANKIGII 357
            +KIKDAVKKMYDIQ KKVNTLIRPDGTKKAYVRLTPD DALDVANKIGII
Sbjct:  105 KKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154          
BLAST of CX676573 vs. ExPASy Swiss-Prot
Match: R23A2_ARATH (60S ribosomal protein L23a-2 OS=Arabidopsis thaliana GN=RPL23AB PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.317e-19
Identity = 47/50 (94.00%), Postives = 48/50 (96.00%), Query Frame = -3
Query:  208 RKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDALDVANKIGII 357
            +KIKDAVKKMYDIQ KKVNTLIRPDGTKKAYVRLTPD DALDVANKIGII
Sbjct:  105 KKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154          
BLAST of CX676573 vs. ExPASy Swiss-Prot
Match: R23A1_ARATH (60S ribosomal protein L23a-1 OS=Arabidopsis thaliana GN=RPL23AA PE=2 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 3.317e-19
Identity = 47/50 (94.00%), Postives = 48/50 (96.00%), Query Frame = -3
Query:  208 RKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDALDVANKIGII 357
            +KIKDAVKKMYDIQ KKVNTLIRPDGTKKAYVRLTPD DALDVANKIGII
Sbjct:  105 KKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 154          
BLAST of CX676573 vs. ExPASy Swiss-Prot
Match: RL23A_FRIAG (60S ribosomal protein L23A OS=Fritillaria agrestis GN=RPL23A PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.667e-18
Identity = 45/50 (90.00%), Postives = 47/50 (94.00%), Query Frame = -3
Query:  208 RKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDALDVANKIGII 357
            +KIK AVKKMYDIQ KKVNTLIRPDGTKKAYVRLTPD DALD+ANKIGII
Sbjct:  105 KKIKAAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDIANKIGII 154          
BLAST of CX676573 vs. ExPASy Swiss-Prot
Match: RL23A_RAT (60S ribosomal protein L23a OS=Rattus norvegicus GN=Rpl23a PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.473e-15
Identity = 40/49 (81.63%), Postives = 42/49 (85.71%), Query Frame = -3
Query:  208 KIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDALDVANKIGII 354
            +IK AVKK+YDI   KVNTLIRPDG KKAYVRL PD DALDVANKIGII
Sbjct:  108 QIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVANKIGII 156          
BLAST of CX676573 vs. ExPASy Swiss-Prot
Match: RL23A_MOUSE (60S ribosomal protein L23a OS=Mus musculus GN=Rpl23a PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.473e-15
Identity = 40/49 (81.63%), Postives = 42/49 (85.71%), Query Frame = -3
Query:  208 KIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDALDVANKIGII 354
            +IK AVKK+YDI   KVNTLIRPDG KKAYVRL PD DALDVANKIGII
Sbjct:  108 QIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVANKIGII 156          
BLAST of CX676573 vs. ExPASy Swiss-Prot
Match: RL23A_HUMAN (60S ribosomal protein L23a OS=Homo sapiens GN=RPL23A PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.473e-15
Identity = 40/49 (81.63%), Postives = 42/49 (85.71%), Query Frame = -3
Query:  208 KIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDALDVANKIGII 354
            +IK AVKK+YDI   KVNTLIRPDG KKAYVRL PD DALDVANKIGII
Sbjct:  108 QIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVANKIGII 156          
BLAST of CX676573 vs. ExPASy Swiss-Prot
Match: RL23A_BOVIN (60S ribosomal protein L23a OS=Bos taurus GN=RPL23A PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.473e-15
Identity = 40/49 (81.63%), Postives = 42/49 (85.71%), Query Frame = -3
Query:  208 KIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDALDVANKIGII 354
            +IK AVKK+YDI   KVNTLIRPDG KKAYVRL PD DALDVANKIGII
Sbjct:  108 QIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVANKIGII 156          
BLAST of CX676573 vs. ExPASy Swiss-Prot
Match: RL25_PUCGR (60S ribosomal protein L25 OS=Puccinia graminis PE=2 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 9.347e-14
Identity = 36/50 (72.00%), Postives = 43/50 (86.00%), Query Frame = -3
Query:  208 RKIKDAVKKMYDIQAKKVNTLIRPDGTKKAYVRLTPDSDALDVANKIGII 357
            R+I DAVKK+YD+   +VNTLIRPDG KKA+VRLTP+ DALD+ANKIG I
Sbjct:  109 RQIADAVKKLYDVTPLRVNTLIRPDGKKKAFVRLTPEVDALDIANKIGFI 158          
The following BLAST results are available for this feature:
BLAST of CX676573 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
RL23A_TOBAC3.317e-1994.0060S ribosomal protein L23a OS=Nicotiana tabacum GN... [more]
RL23A_DAUCA3.317e-1994.0060S ribosomal protein L23a OS=Daucus carota GN=RPL... [more]
R23A2_ARATH3.317e-1994.0060S ribosomal protein L23a-2 OS=Arabidopsis thalia... [more]
R23A1_ARATH3.317e-1994.0060S ribosomal protein L23a-1 OS=Arabidopsis thalia... [more]
RL23A_FRIAG3.667e-1890.0060S ribosomal protein L23A OS=Fritillaria agrestis... [more]
RL23A_RAT6.473e-1581.6360S ribosomal protein L23a OS=Rattus norvegicus GN... [more]
RL23A_MOUSE6.473e-1581.6360S ribosomal protein L23a OS=Mus musculus GN=Rpl2... [more]
RL23A_HUMAN6.473e-1581.6360S ribosomal protein L23a OS=Homo sapiens GN=RPL2... [more]
RL23A_BOVIN6.473e-1581.6360S ribosomal protein L23a OS=Bos taurus GN=RPL23A... [more]
RL25_PUCGR9.347e-1472.0060S ribosomal protein L25 OS=Puccinia graminis PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_70G10_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-3 Citrus sinensis cDNA clone UCRCS08-70G10-M20-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX676573 ID=CX676573; Name=CX676573; organism=Citrus sinensis; type=EST; length=758bp
TTTTTTTTTTTTTTTTTAAAGAAAAAAATTAATAGCATTATCAGACCAGT
GCATTATTTCATGCACCCACCAATTTGTTAATGCAGGGGATAAAATTCAT
AAACAGTTAACAGGAACAAATTTGGAAATCTTTGTTTGAGGTCTTAACAT
AACTAACTTTTTGGATTAAAAAATACACAAAAATGTGAATGAAAGATCAA
TTGTTTAAATGATTCCAATCTTGTTTGCTACGTCCAAAGCATCAGAGTCT
GGTGTCAACCTGACATAAGCCTTCTTTGTACCATCGGGCCTGATCAAGGT
ATTCACTTTCTTAGCCTGGATATCATACATCTTCTTAACTGCATCCTTTA
TCTTTCTTGCTAGATATGGACCCCTTCTAACAGCTTCATCAAGCTTTTCG
CCTATGCCAGCAAAAGCGGGGTCACTGACAAGATCACTCGAGACAAAAGC
CTTACGAATTGCCTTGCAACAATTGTATCTAGCTTCCATACCTATTTTTG
TTGCTTCAGTACTTGCATCAGTCACTGTGTTTATTATCTCTTGTTTTGAG
CAAAGCTCCATCAGGCACCATGGCCGAGCCACCAACCCAGTTATCATTCT
GTATCCCGCCAATCGGATTTCTGCGGCCTGTTGAAGAACTGATAGAAAGA
GACCTGATGGTGTTAGTTTCGAACTCTCGAGTTTTTTTTTTTTTTTTTTT
TTTTTTGCACCAAGAATGAGCACTATGTTGCATATAAATACGAAAAAATT
CTGACCTT
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