EG358202

Overview
NameEG358202
Unique NameEG358202
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length457
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EG358202_ssr365 microsatellite EG358202_ssr365:365..376. BLAST: Citrus ESTs to Prunus persica proteins V1
EG358202_ssr73 microsatellite EG358202_ssr73:73..84. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13852 contig Csv1_Contig13852:330..786. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EG358202 vs. ExPASy Swiss-Prot
Match: PME2_CITSI (Pectinesterase 2 OS=Citrus sinensis GN=PECS-2.1 PE=2 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 3.923e-49
Identity = 90/91 (98.90%), Postives = 91/91 (100.00%), Query Frame = 2
Query:   17 RYSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTSGL 289
            +YSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTSGL
Sbjct:  420 QYSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTSGL 510          
BLAST of EG358202 vs. ExPASy Swiss-Prot
Match: PME17_ARATH (Probable pectinesterase/pectinesterase inhibitor 17 OS=Arabidopsis thaliana GN=PME17 PE=2 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 1.402e-30
Identity = 59/91 (64.84%), Postives = 76/91 (83.52%), Query Frame = 2
Query:   17 RYSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTSGL 289
            +YSRTV++KT LDSLI+P GW+EW G+FAL TL+YAE+ NTGPG+ST+ RV W G+ VL S S+ S+FTVG F+AG SW+P ++VPFTSGL
Sbjct:  422 QYSRTVFMKTSLDSLIDPRGWLEWDGNFALKTLFYAEFQNTGPGASTSGRVTWPGFRVLGSASEASKFTVGTFLAGGSWIP-SSVPFTSGL 511          
BLAST of EG358202 vs. ExPASy Swiss-Prot
Match: PME36_ARATH (Probable pectinesterase/pectinesterase inhibitor 36 OS=Arabidopsis thaliana GN=PME36 PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 2.238e-28
Identity = 52/91 (57.14%), Postives = 68/91 (74.73%), Query Frame = 2
Query:   17 RYSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTSGL 289
            +YSRTV++KT +D LI+P GW EWSG +AL+TLYY E+MNTG G+ T  RV W G+HVL    + S FTV  FI G+SW+P T VPF++G+
Sbjct:  429 KYSRTVFLKTDIDELIDPRGWREWSGSYALSTLYYGEFMNTGAGAGTGRRVNWPGFHVLRGEEEASPFTVSRFIQGDSWIPITGVPFSAGV 519          
BLAST of EG358202 vs. ExPASy Swiss-Prot
Match: PME1_SOLLC (Pectinesterase 1 OS=Solanum lycopersicum GN=PME1.9 PE=1 SV=5)

HSP 1 Score: 123.635 bits (309), Expect = 3.818e-28
Identity = 53/90 (58.89%), Postives = 65/90 (72.22%), Query Frame = 2
Query:   20 YSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTSGL 289
            YSRTV ++++L  LINPAGW EW GDFAL TLYY E+MN GPG+ T+ RVKW GYHV+T P++   FTV   I G SWL +T V +  GL
Sbjct:  455 YSRTVVMESYLGGLINPAGWAEWDGDFALKTLYYGEFMNNGPGAGTSKRVKWPGYHVITDPAKAMPFTVAKLIQGGSWLRSTGVAYVDGL 544          
BLAST of EG358202 vs. ExPASy Swiss-Prot
Match: PME_ACTDE (Pectinesterase OS=Actinidia deliciosa PE=1 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 4.986e-28
Identity = 54/85 (63.53%), Postives = 68/85 (80.00%), Query Frame = 2
Query:   20 YSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVP 274
            YSRTV++ + ++SLI+PAGW+EWSGDFAL TLYY EY NTGPGS+T  RV W GY V T+ ++V QFTVGNFI G+ WL + N+P
Sbjct:  231 YSRTVFLLSQMESLIDPAGWLEWSGDFALTTLYYREYKNTGPGSNTTARVTWPGYAVTTNETEVIQFTVGNFIQGSQWLTSYNIP 315          
BLAST of EG358202 vs. ExPASy Swiss-Prot
Match: PME32_ARATH (Probable pectinesterase/pectinesterase inhibitor 32 OS=Arabidopsis thaliana GN=PME32 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 6.512e-28
Identity = 50/90 (55.56%), Postives = 68/90 (75.56%), Query Frame = 2
Query:   20 YSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTSGL 289
            YSRTV+++ ++   INP GW+EW+G+FAL+TLYY EYMN+GPG+S   RVKW GYHVL + ++ + FTV   I GN WLP+T + F +GL
Sbjct:  436 YSRTVFMQNYMSDAINPVGWLEWNGNFALDTLYYGEYMNSGPGASLDRRVKWPGYHVLNTSAEANNFTVSQLIQGNLWLPSTGITFIAGL 525          
BLAST of EG358202 vs. ExPASy Swiss-Prot
Match: PME22_SOLLC (Pectinesterase 2.2 OS=Solanum lycopersicum GN=PME2.2 PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 6.512e-28
Identity = 52/91 (57.14%), Postives = 65/91 (71.43%), Query Frame = 2
Query:   17 RYSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTSGL 289
            +YSRTV ++++L  LINPAGW EW GDFAL TLYY E+MN GPG+ T+ RVKW GYH +T P++   FTV   I G SWL +T V +  GL
Sbjct:  458 KYSRTVVMESYLGGLINPAGWAEWDGDFALKTLYYGEFMNNGPGAGTSKRVKWPGYHCITDPAEAMPFTVAKLIQGGSWLRSTGVAYVDGL 548          
BLAST of EG358202 vs. ExPASy Swiss-Prot
Match: PME21_SOLLC (Pectinesterase 2.1 OS=Solanum lycopersicum GN=PME2.1 PE=2 SV=2)

HSP 1 Score: 122.094 bits (305), Expect = 1.111e-27
Identity = 51/91 (56.04%), Postives = 67/91 (73.63%), Query Frame = 2
Query:   17 RYSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTSGL 289
            +YSRTV ++++L  LI+P+GW EW GDFAL TLYY E+MN GPG+ T+ RVKW GYHV+T P++   FTV   I G SWL +T+V +  GL
Sbjct:  458 KYSRTVVMESYLGGLIDPSGWAEWHGDFALKTLYYGEFMNNGPGAGTSKRVKWPGYHVITDPAEAMSFTVAKLIQGGSWLRSTDVAYVDGL 548          
BLAST of EG358202 vs. ExPASy Swiss-Prot
Match: PME20_ARATH (Probable pectinesterase/pectinesterase inhibitor 20 OS=Arabidopsis thaliana GN=PME20 PE=2 SV=2)

HSP 1 Score: 121.324 bits (303), Expect = 1.895e-27
Identity = 53/90 (58.89%), Postives = 65/90 (72.22%), Query Frame = 2
Query:   20 YSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTSGL 289
            YSRTV ++T++D  + P+GW  WSGDFAL+TLYYAEY NTGPGS T NRV W GYHV+ + +  S FTV NF+ G  W+  T VPF  GL
Sbjct:  470 YSRTVVMQTYIDGFLEPSGWNAWSGDFALSTLYYAEYNNTGPGSDTTNRVTWPGYHVINA-TDASNFTVTNFLVGEGWIGQTGVPFVGGL 558          
BLAST of EG358202 vs. ExPASy Swiss-Prot
Match: PME1_FICAW (Pectinesterase/pectinesterase inhibitor OS=Ficus awkeotsang PE=1 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 1.895e-27
Identity = 52/90 (57.78%), Postives = 66/90 (73.33%), Query Frame = 2
Query:   20 YSRTVYIKTFLDSLINPAGWMEWSGDFALNTLYYAEYMNTGPGSSTANRVKWRGYHVLTSPSQVSQFTVGNFIAGNSWLPATNVPFTSGL 289
            YSRTV +++++  +I+PAGW+EW  DFAL TL+Y EY N GPGS T+ RVKW GYHV+TSP    QFTV   I G SWL +T V +T+GL
Sbjct:  454 YSRTVVMESYISDVIDPAGWLEWDRDFALKTLFYGEYRNGGPGSGTSERVKWPGYHVITSPEVAEQFTVAELIQGGSWLGSTGVDYTAGL 543          
The following BLAST results are available for this feature:
BLAST of EG358202 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
PME2_CITSI3.923e-4998.90Pectinesterase 2 OS=Citrus sinensis GN=PECS-2.1 PE... [more]
PME17_ARATH1.402e-3064.84Probable pectinesterase/pectinesterase inhibitor 1... [more]
PME36_ARATH2.238e-2857.14Probable pectinesterase/pectinesterase inhibitor 3... [more]
PME1_SOLLC3.818e-2858.89Pectinesterase 1 OS=Solanum lycopersicum GN=PME1.9... [more]
PME_ACTDE4.986e-2863.53Pectinesterase OS=Actinidia deliciosa PE=1 SV=1[more]
PME32_ARATH6.512e-2855.56Probable pectinesterase/pectinesterase inhibitor 3... [more]
PME22_SOLLC6.512e-2857.14Pectinesterase 2.2 OS=Solanum lycopersicum GN=PME2... [more]
PME21_SOLLC1.111e-2756.04Pectinesterase 2.1 OS=Solanum lycopersicum GN=PME2... [more]
PME20_ARATH1.895e-2758.89Probable pectinesterase/pectinesterase inhibitor 2... [more]
PME1_FICAW1.895e-2757.78Pectinesterase/pectinesterase inhibitor OS=Ficus a... [more]

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Properties
Property NameValue
Genbank description4c3 Citrus sinensis flesh suppression subtractive hybridization (SSH) cDNA library Moro nucellare 58-8D-I cultivar Citrus sinensis cDNA clone Cl0004c3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EG358202 ID=EG358202; Name=EG358202; organism=Citrus sinensis; type=EST; length=457bp
AGCGTGGTCGCGGCCGAGGTACTCGCGAACCGTTTACATCAAGACCTTCC
TTGACAGCTTGATAAACCCCGCTGGATGGATGGAATGGAGTGGTGATTTT
GCTTTGAATACTCTGTATTATGCTGAGTATATGAACACTGGCCCGGGTTC
TTCAACTGCTAACAGAGTCAAGTGGCGTGGCTATCACGTTCTTACCAGTC
CGTCCCAGGTTAGCCAGTTCACCGTAGGCAACTTTATTGCTGGAAATTCT
TGGTTGCCGGCCACCAACGTCCCCTTCACCTCCGGTCTCTAGGTTGATCA
TTCTTTGTTTATATTTTATTGCACATGAAATTAATACCAACTTGTTGAGG
TAATTAGGAGGAAAAATAATAATAATAAGGTAGTTAAAAGGAACTACCAT
CTTGGCATTGTCAGTTGTTATTCTTTGTGAAGTTGTACCTGCCCGGGCGG
CCGCTCG
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