CN189226

Overview
NameCN189226
Unique NameCN189226
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length739
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2720 contig Csv1_Contig2720:1..739. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN189226 vs. ExPASy Swiss-Prot
Match: ATG4_MEDTR (Cysteine protease ATG4 OS=Medicago truncatula GN=ATG4 PE=3 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.577e-45
Identity = 97/191 (50.79%), Postives = 118/191 (61.78%), Query Frame = 2
Query:  167 VMKGFREKAGASKCFSKSTPDTPNRSLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETYSESSASEKKAVHNKSNGWTAAVKRLVTAGSMRRIHERVLGPSRTGISSSTSDIWLLGVCHKIAQXXXXXXXXXXXXXXXFNQDFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRL 739
            V+K   ++  A+KC SKS+ +  + +                                ETYSESS+SEKK VH++++GW AAV+++V+ GSMRR  ERVLG  RT +SSS  DIWLLGVCHKI+Q               F QDF SRILI+YRKGFD I DSK TSDV WGCMLRSSQMLVAQALLFH+L
Sbjct:    2 VLKDLCDRIVAAKCSSKSSTEIVDNTQVPASSKAGSSDSKFPKASLWSTFFTSGFSVDETYSESSSSEKKTVHSRNSGWAAAVRKVVSGGSMRRFQERVLGSCRTDVSSSDGDIWLLGVCHKISQHESTGDVDIRNVFAAFEQDFFSRILITYRKGFDAIEDSKYTSDVNWGCMLRSSQMLVAQALLFHKL 192          
BLAST of CN189226 vs. ExPASy Swiss-Prot
Match: ATG4A_ARATH (Cysteine protease ATG4a OS=Arabidopsis thaliana GN=ATG4A PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.851e-35
Identity = 75/134 (55.97%), Postives = 93/134 (69.40%), Query Frame = 2
Query:  341 ETYSESSASEKKAVHNKSNGWTAAVKRL-VTAGSMRRIHERVLGPSRTGISSSTSDIWLLGVCHKIAQXXXXXXXXXXXXXXXFNQDFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRL 739
            + Y ESS S  K V    NGWTA VKR+ + +G++RR  ERVLGP+RTG+ S+TSD+WLLGVC+KI+                   DFSS+IL++YRKGF+P  D+  TSDV WGCM+RSSQML AQALLFHRL
Sbjct:   55 QPYRESSTSGHKQVCTTRNGWTAFVKRVSMASGAIRRFQERVLGPNRTGLPSTTSDVWLLGVCYKISADENSGETDTGTVLAALQLDFSSKILMTYRKGFEPFRDTTYTSDVNWGCMIRSSQMLFAQALLFHRL 188          
BLAST of CN189226 vs. ExPASy Swiss-Prot
Match: ATG4B_ARATH (Cysteine protease ATG4b OS=Arabidopsis thaliana GN=ATG4B PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.585e-33
Identity = 72/130 (55.38%), Postives = 89/130 (68.46%), Query Frame = 2
Query:  353 ESSASEKKAVHNKSNGWTAAVKRL-VTAGSMRRIHERVLGPSRTGISSSTSDIWLLGVCHKIAQXXXXXXXXXXXXXXXFNQDFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRL 739
            E+S S    V    + WT  +K   + +G++RR  +RVLGPSRTGISSSTS+IWLLGVC+KI++               F QDFSS IL++YR+GF+PIGD+  TSDV WGCMLRS QML AQALLF RL
Sbjct:   62 EASTSGHNPVCTTHSSWTVILKTASMASGAIRRFQDRVLGPSRTGISSSTSEIWLLGVCYKISEGESSEEADAGRVLAAFRQDFSSLILMTYRRGFEPIGDTTYTSDVNWGCMLRSGQMLFAQALLFQRL 191          
BLAST of CN189226 vs. ExPASy Swiss-Prot
Match: ATG4A_ORYSJ (Cysteine protease ATG4A OS=Oryza sativa subsp. japonica GN=ATG4A PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.018e-25
Identity = 62/133 (46.62%), Postives = 82/133 (61.65%), Query Frame = 2
Query:  341 ETYSESSASEKKAVHNKSNGWTAAVKRLVTAGSMRRIHERVLGPSRTGISSSTSDIWLLGVCHKIAQXXXXXXXXXXXXXXXFNQDFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRL 739
            E + +SSA+     H+ S  W+  ++R+   GSM R     LG S+   + ++SD+W LG C+K++                F +DFSSRI I+YRKGFD I DSK TSDV WGCM+RSSQMLVAQAL+FH L
Sbjct:   54 EAHQDSSANRSLKPHSGSYAWSRFLRRIACTGSMWRF----LGASK---ALTSSDVWFLGKCYKLSSEELSNSSDCESGNAAFLEDFSSRIWITYRKGFDAISDSKYTSDVNWGCMVRSSQMLVAQALIFHHL 179          
BLAST of CN189226 vs. ExPASy Swiss-Prot
Match: ATG4A_ORYSI (Cysteine protease ATG4A OS=Oryza sativa subsp. indica GN=ATG4A PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.268e-25
Identity = 62/133 (46.62%), Postives = 81/133 (60.90%), Query Frame = 2
Query:  341 ETYSESSASEKKAVHNKSNGWTAAVKRLVTAGSMRRIHERVLGPSRTGISSSTSDIWLLGVCHKIAQXXXXXXXXXXXXXXXFNQDFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRL 739
            E + +SSA      H+ S  W+  ++R+   GSM R     LG S+   + ++SD+W LG C+K++                F +DFSSRI I+YRKGFD I DSK TSDV WGCM+RSSQMLVAQAL+FH L
Sbjct:   53 EAHQDSSAHRPLKPHSGSYAWSRFLRRIACTGSMWRF----LGASK---ALTSSDVWFLGKCYKLSSEELSNSSDCESGNAAFLEDFSSRIWITYRKGFDAISDSKYTSDVNWGCMVRSSQMLVAQALIFHHL 178          
BLAST of CN189226 vs. ExPASy Swiss-Prot
Match: ATG4B_ORYSJ (Cysteine protease ATG4B OS=Oryza sativa subsp. japonica GN=ATG4B PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.869e-25
Identity = 61/133 (45.86%), Postives = 83/133 (62.41%), Query Frame = 2
Query:  341 ETYSESSASEKKAVHNKSNGWTAAVKRLVTAGSMRRIHERVLGPSRTGISSSTSDIWLLGVCHKIAQXXXXXXXXXXXXXXXFNQDFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRL 739
            E + +SSA++     + S  W+  ++R+V +GSM R     LG S+     ++SD+W LG C+K++                F +DFSSRI I+YR+GFD I DSK TSDV WGCM+RSSQMLVAQAL+FH L
Sbjct:   57 EAHQDSSANKSPKSSSGSYDWSRVLRRIVCSGSMWRF----LGTSKV---LTSSDVWFLGKCYKLSSEESSSDSDSESGHATFLEDFSSRIWITYRRGFDAISDSKYTSDVNWGCMVRSSQMLVAQALIFHHL 182          
BLAST of CN189226 vs. ExPASy Swiss-Prot
Match: ATG4B_ORYSI (Cysteine protease ATG4B OS=Oryza sativa subsp. indica GN=ATG4B PE=1 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 6.600e-25
Identity = 61/133 (45.86%), Postives = 82/133 (61.65%), Query Frame = 2
Query:  341 ETYSESSASEKKAVHNKSNGWTAAVKRLVTAGSMRRIHERVLGPSRTGISSSTSDIWLLGVCHKIAQXXXXXXXXXXXXXXXFNQDFSSRILISYRKGFDPIGDSKITSDVGWGCMLRSSQMLVAQALLFHRL 739
            E + +SSA++     + S  W   ++R+V +GSM R     LG S+     ++SD+W LG C+K++                F +DFSSRI I+YR+GFD I DSK TSDV WGCM+RSSQMLVAQAL+FH L
Sbjct:   57 EAHQDSSANKSPKSSSGSYDWLRVLRRIVCSGSMWRF----LGTSKV---LTSSDVWFLGKCYKLSSEESSSDSDSESGHATFLEDFSSRIWITYRRGFDAISDSKYTSDVNWGCMVRSSQMLVAQALIFHHL 182          
The following BLAST results are available for this feature:
BLAST of CN189226 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
ATG4_MEDTR2.577e-4550.79Cysteine protease ATG4 OS=Medicago truncatula GN=A... [more]
ATG4A_ARATH1.851e-3555.97Cysteine protease ATG4a OS=Arabidopsis thaliana GN... [more]
ATG4B_ARATH6.585e-3355.38Cysteine protease ATG4b OS=Arabidopsis thaliana GN... [more]
ATG4A_ORYSJ1.018e-2546.62Cysteine protease ATG4A OS=Oryza sativa subsp. jap... [more]
ATG4A_ORYSI2.268e-2546.62Cysteine protease ATG4A OS=Oryza sativa subsp. ind... [more]
ATG4B_ORYSJ3.869e-2545.86Cysteine protease ATG4B OS=Oryza sativa subsp. jap... [more]
ATG4B_ORYSI6.600e-2545.86Cysteine protease ATG4B OS=Oryza sativa subsp. ind... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0001I06_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001I06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189226 ID=CN189226; Name=CN189226; organism=Citrus sinensis; type=EST; length=739bp
GAGGGTTTCGATATTTTGCCTTGTACCAGAAAAAAAGGATTTCAATTTTC
AAGTTCAAAATTCAAGGAGAAGTTGAAACCAATCATTGATTCGTTTCGAT
AAATTTTTGTAAATTGGGTTGCTTTCGTGAGCCCAATTTCGTGGCCTCAT
GTCGATGCATGACTAGGTAATGAAGGGATTTCGTGAAAAGGCTGGTGCTT
CAAAATGTTTTTCTAAAAGTACACCTGATACACCAAACAGATCTTTGGCA
TCTGTTGGTTCAGAGCCGGGATCTAGTGAGAGTAAGTCATCCAAGGGTTC
CTTGTTGTCAAGCTTGTTTAATTCTGCTTTCTCAGTCTTTGAAACGTATA
GTGAGTCGTCAGCTAGTGAAAAGAAGGCAGTTCATAATAAAAGTAATGGG
TGGACAGCAGCTGTGAAGAGACTAGTGACTGCTGGCTCAATGAGGAGAAT
ACATGAACGTGTACTAGGGCCGAGCAGGACTGGAATTTCTAGCTCAACCA
GTGACATATGGCTTCTTGGTGTGTGCCATAAAATTGCACAGGATGAGGCC
TTGGGTGATGCAGCTGGTAACAATGGATTAGCGGAATTCAATCAAGATTT
TTCATCAAGAATTCTGATTTCATATCGTAAAGGTTTTGATCCTATTGGTG
ATTCAAAGATTACAAGTGATGTAGGCTGGGGTTGCATGCTTCGAAGTAGT
CAGATGCTTGTTGCACAGGCATTGCTTTTTCATCGATTG
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