CN189225

Overview
NameCN189225
Unique NameCN189225
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length707
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2719 contig Csv1_Contig2719:1..707. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CN189225 vs. ExPASy Swiss-Prot
Match: ATG4_MEDTR (Cysteine protease ATG4 OS=Medicago truncatula GN=ATG4 PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.852e-14
Identity = 42/73 (57.53%), Postives = 50/73 (68.49%), Query Frame = -3 
Query:  400 DDFDDFCARASKLAEESNGAPLFTVTQTHKKP--VNHSDVLGETGGVPEDDSLGVMSMNDAVGNAHEDDWQLL 612
            DDFDDFC+RA+KLAEESNGAPLFTV Q+   P  V  + V G+     EDDSL +  +NDA    +EDDWQ L
Sbjct:  418 DDFDDFCSRATKLAEESNGAPLFTVAQSRSLPMQVTSNSVSGDDTRFEEDDSLSMNLVNDA---GNEDDWQFL 487
[Close]
BLAST of CN189225 vs. ExPASy Swiss-Prot
Match: ATG4B_ARATH (Cysteine protease ATG4b OS=Arabidopsis thaliana GN=ATG4B PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.951e-11
Identity = 36/71 (50.70%), Postives = 44/71 (61.97%), Query Frame = -3 
Query:  400 DDFDDFCARASKLAEESNGAPLFTVTQTHKKPVNHSDVLGETGGVPEDDSLGVMSMNDAVGNAHEDDWQLL 612
            DDFDDFC RA+KLA +SNGAPLFTVTQ+H++            G+ E  S    +  +  G  HEDDWQLL
Sbjct:  417 DDFDDFCIRATKLAGDSNGAPLFTVTQSHRR---------NDCGIAETSS-STETSTEISGEEHEDDWQLL 477
[Close]
BLAST of CN189225 vs. ExPASy Swiss-Prot
Match: ATG4A_ARATH (Cysteine protease ATG4a OS=Arabidopsis thaliana GN=ATG4A PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.575e-11
Identity = 39/71 (54.93%), Postives = 44/71 (61.97%), Query Frame = -3 
Query:  400 DDFDDFCARASKLAEESNGAPLFTVTQTHKKPVNHSDVLGETGGVPEDDSLGVMSMNDAVGNAHEDDWQLL 612
            DDFDDFC RA KLAEESNGAPLFTVTQTH   +N S+      G  +DDS           +  EDDWQ+L
Sbjct:  413 DDFDDFCLRALKLAEESNGAPLFTVTQTH-TAINQSNY-----GFADDDS----------EDEREDDWQML 467
The following BLAST results are available for this feature:
BLAST of CN189225 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
ATG4_MEDTR2.852e-1457.53Cysteine protease ATG4 OS=Medicago truncatula GN=A... [more]
ATG4B_ARATH2.951e-1150.70Cysteine protease ATG4b OS=Arabidopsis thaliana GN... [more]
ATG4A_ARATH6.575e-1154.93Cysteine protease ATG4a OS=Arabidopsis thaliana GN... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0001I06_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001I06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189225 ID=CN189225; Name=CN189225; organism=Citrus sinensis; type=EST; length=707bp
TTTTTTTTTTTTTTTGTATGAAGTAATTTCACCCAGGAAGTGACTATAAC
ATTATAAAGTAGGAAACCAGCAACATCTCAAATGCTAAAATACCAATCCC
TAATGGGATACTTTGCATCAATATATTACAACATACATATTTGGTCAGTA
GTATGAACAGCTTGAAAATAATTTAAAAGAATCAAGGCTAAATGTAATTT
CTACACAATGTTGAATTTGACGAGTTCCAGAATAAATGAGCAGAATCATA
CAAGCCGACCGAATATGTTGTCATTGTGGTTGTACTAATGAGAGAGGCAT
TGTCGAACCAGGATGCTATTGACAACAGTTGGGAAGTAAAAGCCGTGTAC
AAGCTTCCAACCCGACAGCCTTTCGAGACGTGTAATAATTTACAACTCAA
AGGAGTTGCCAGTCATCCTCATGTGCATTGCCTACTGCATCGTTCATGGA
CATCACACCTAAGGAATCATCCTCTGGAACCCCACCAGTTTCGCCCAACA
CATCACTGTGATTGACTGGCTTTTTATGAGTTTGAGTCACCGTGAATAAT
GGAGCACCATTTGACTCCTCTGCTAGCTTGGATGCCCGGGCACAAAAATC
ATCAAAATCATCTGCCAACCATAATGGGAAATAAACGATACCACTGTCAA
GATGACTAGCAGAGCCTTGTCCTAGATGTAAATTACCTCCCACCATACCA
TAAAATT
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