CN189224

Overview
NameCN189224
Unique NameCN189224
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length553
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6885 contig Csv1_Contig6885:83..635. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN189224 vs. ExPASy Swiss-Prot
Match: PUB19_ARATH (U-box domain-containing protein 19 OS=Arabidopsis thaliana GN=PUB19 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.652e-12
Identity = 36/84 (42.86%), Postives = 55/84 (65.48%), Query Frame = -2 
Query:  259 SRAGKEYCVSILLSLCSNAREEVTASLAKDPSLMNSLYSLTTDGTSQARKKARSLIKILHKFIETCSSGVEGSAVPHERPLHVW 510
            S A K++CV++LL+LC N   +V  SLAK+PS+M SLY+ +++G     KKA +LIK++H+F E   +G     +  ER +H W
Sbjct:  604 SPATKQHCVALLLNLCHNGGSDVVGSLAKNPSIMGSLYTASSNGELGGGKKASALIKMIHEFQER-KTGPGEPVLERERFVHAW 686
The following BLAST results are available for this feature:
BLAST of CN189224 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PUB19_ARATH3.652e-1242.86U-box domain-containing protein 19 OS=Arabidopsis ... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS06_0001I05_f Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001I05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189224 ID=CN189224; Name=CN189224; organism=Citrus sinensis; type=EST; length=553bp
TTTTTTTTTTTTTTTTTCCGGTATCTCACATCATTTTATTTATCACCAAA
AAAAAAAGGAAAAAAATTGCCAACTACACAGATCTATTTATGTATTTGTA
TCTAATCTAAGCAGACTGAAAAGTAATTAGCTCTTACAAAAACGGAGCTA
ATTGAAATCGCAGAAGCTGAAAACAATCAAAGTACCATGTGATTCTGTAC
GCTATATTGTATGTCTGTATTTACATTGATAGTGATAGAATCATTCTAAA
ACAGTTTACCAGACATGAAGCGGTCGTTCATGAGGAACTGCCGAACCCTC
GACTCCAGAGGAGCACGTTTCAATGAATTTATGAAGAATTTTGATGAGGG
AACGCGCCTTTTTTCTTGCTTGGGATGTGCCATCTGTTGTGAGAGAATAT
AGTGAATTCATGAGTGAAGGGTCCTTCGCCAAACTTGCAGTCACCTCTTC
ACGAGCATTGCTGCATAAAGAGAGTAATATTGAGACACAATACTCTTTCC
CAGCTCGTGAAGTTAACGTTTGCAATAGCCCAATAATTACAGGCAATGCT
GAA
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