CN189219

Overview
NameCN189219
Unique NameCN189219
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length761
Libraries
Library NameType
Washington Navel Orange Stored Fruit Rind cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN189219 vs. ExPASy Swiss-Prot
Match: CD48C_ARATH (Cell division control protein 48 homolog C OS=Arabidopsis thaliana GN=CDC48C PE=1 SV=2)

HSP 1 Score: 235.343 bits (599), Expect = 2.701e-61
Identity = 126/201 (62.69%), Postives = 147/201 (73.13%), Query Frame = 3
Query:    6 LNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGXXXXXXXXXXXXXXXXXKLISSKSS----SDVTPFTIKLTHFEQALSKISPSVSELQIQRYKTLS 596
            LNKYVGESELA+RTLF RARTC+PC++FFDEVDALTT RGKEG WVVERLLNQ L+ELDG + R+ V+VIGATNRPDV+D A LRPGRFG LLYVPLP  DER  IL+A+ARKKPID SVDL  IA++  CE  SG                  + SS+SS    +D+T  TIK  HFEQALS +SPSV++ Q + Y  LS
Sbjct:  599 LNKYVGESELAIRTLFQRARTCAPCVIFFDEVDALTTSRGKEGAWVVERLLNQFLVELDGGE-RRNVYVIGATNRPDVVDPAFLRPGRFGNLLYVPLPNADERASILKAIARKKPIDPSVDLDGIAKNN-CEGFSGADLAHLVQKATFQAVEEMIGSSESSEDDVTDITQCTIKTRHFEQALSLVSPSVNKQQRRHYDALS 797          

HSP 2 Score: 80.8777 bits (198), Expect = 8.515e-15
Identity = 51/132 (38.64%), Postives = 73/132 (55.30%), Query Frame = 3
Query:   21 GESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGA---------DKRKG-VFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQ 386
            G SE  +R LFS+A   +P I+F DE+DA+ +KR  +   + +R++ QLL  +DG          D   G V VIGATNRPD +D A+ R GRF   + +  P  D R  IL  +A+K  ++   D   IA+
Sbjct:  309 GASEENIRELFSKAYRTAPSIVFIDEIDAIGSKRENQQREMEKRIVTQLLTCMDGPGNKGDKNAPDSSAGFVLVIGATNRPDALDPALRRSGRFETEIALTAPDEDARAEILSVVAQKLRLEGPFDKKRIAR 440          
BLAST of CN189219 vs. ExPASy Swiss-Prot
Match: NVL_DICDI (Putative ribosome biogenesis ATPase nvl OS=Dictyostelium discoideum GN=nvl PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 4.197e-38
Identity = 90/200 (45.00%), Postives = 114/200 (57.00%), Query Frame = 3
Query:    6 LNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKE---GGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGXXXXXXXXXXXXXXXXXKLISSKSSSDVTPFTIKLTHFEQALSKISPSVSELQIQRYKTLS 596
            LNKYVGESE AVR +F RA   SPC++FFDE DAL  KRG     G    ER++NQLL E+DG +KR  VF+I ATNRPD++D A+ RPGR  K++YVPLP+P+ER  IL+ L  K PI   VDL  +     C + SG                  +     ++   P T+ +  F  ALSKI PSVS      Y  L+
Sbjct:  637 LNKYVGESERAVRQVFQRAAASSPCVIFFDEFDALAPKRGGGDGGGNQATERVVNQLLTEMDGLEKRSEVFIIAATNRPDIIDAAMCRPGRLDKMVYVPLPSPEERCEILKTLTHKIPIHQDVDLIKVGTDLRCHSFSG----ADLSLLVKEAANHAISRGFDNNSTEPDTVTMEDFIFALSKIKPSVSRKDELMYDKLN 832          
BLAST of CN189219 vs. ExPASy Swiss-Prot
Match: YB7A_SCHPO (Uncharacterized AAA domain-containing protein C16E9.10c OS=Schizosaccharomyces pombe GN=SPBC16E9.10c PE=1 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 8.751e-36
Identity = 83/211 (39.34%), Postives = 118/211 (55.92%), Query Frame = 3
Query:    6 LNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGXXXXXXXXXXXXXXXXXKLISSKSSSD--------VTPFTIKLTHFEQALSKISPSVSELQIQRYKTLSETFKAA 614
            LNKYVGESE AVR +F RAR  SPC++FFDE+DA+  +R         R++N LL ELDG   R GV+VI ATNRPD++D A+LRPGR  K L V LP   ER  IL+ L ++ P+ + V+L  + + + C N SG                  + +  +S++        + P  +    FE A   I PSVS+   Q+Y+ L++ + +A
Sbjct:  563 LNKYVGESERAVRQVFLRARASSPCVIFFDELDAMVPRRDDSLSEASSRVVNTLLTELDGLSDRSGVYVIAATNRPDIIDPAMLRPGRLDKTLLVDLPDAHERVEILKTLTKQTPLHEEVNLDVLGRDERCSNFSGADLAALVREAAVTALRSAVFADIASNEPEITQHSALEPIRVTNADFELAFKNIKPSVSDRDRQKYQRLAKRWSSA 773          

HSP 2 Score: 85.1149 bits (209), Expect = 4.515e-16
Identity = 48/126 (38.10%), Postives = 73/126 (57.94%), Query Frame = 3
Query:   21 GESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELD--GADKRKG--VFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQ 386
            GESE  VR +F  A++ +PC++F DE+DA+T KR      +  R++ Q L  +D    +K  G  V VIGATNRPD +D A+ R GRF + + + +P+ D R  IL  +A+   +    D   +A+
Sbjct:  250 GESEKKVREVFEEAKSLAPCLMFIDEIDAVTPKRESAQREMERRIVAQFLTCMDELSFEKTDGKPVLVIGATNRPDSLDSALRRAGRFDREICLTVPSQDAREKILRTMAKGLKLSGDFDFRQLAK 375          
BLAST of CN189219 vs. ExPASy Swiss-Prot
Match: NVL_MOUSE (Nuclear valosin-containing protein-like OS=Mus musculus GN=Nvl PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.949e-35
Identity = 79/202 (39.11%), Postives = 113/202 (55.94%), Query Frame = 3
Query:    6 LNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALAR---KKPIDDSVDLHTIAQSKFCENLSGXXXXXXXXXXXXXXXXXKLISSKSSSDVTPFTIKLTHFEQALSKISPSVSELQIQRYKTLSET 602
            LN YVGESE AVR +F RA+  +PC++FFDEVDAL  +R         R++NQLL E+DG + R+ VF++ ATNRPD++D A+LRPGR  K L+V LP P +R  IL+ + +   K P+D+ V+L TIA    C   +G                 ++ + K+        +   HFE A  K+ PS+S      Y+ L  +
Sbjct:  651 LNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLETRQQVFILAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRVAILKTITKNGTKPPLDEDVNLETIANDLRCNCYTGADLTALVREASLCALRQEITAQKNGVGAGELKVSHKHFEDAFKKVKPSISIKDQVMYEALQRS 852          

HSP 2 Score: 80.4925 bits (197), Expect = 1.112e-14
Identity = 48/124 (38.71%), Postives = 72/124 (58.06%), Query Frame = 3
Query:   21 GESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLI---ELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIA 383
            GESE  +R LF +A + +PCI+F DE+DA+T KR      +  R++ QLL    +L+       V VIGATNRPD +D A+ R GRF + + + +P    R  IL+ L RK  + ++ +   +A
Sbjct:  339 GESEQKLRELFDQAVSNAPCIVFIDEIDAITPKREVASKDMERRIVAQLLTCMDDLNNVAATARVLVIGATNRPDSLDPALRRAGRFDREVCLGIPDEAARERILQTLCRKLRLPETFNFCHLA 462          
BLAST of CN189219 vs. ExPASy Swiss-Prot
Match: NVL_HUMAN (Nuclear valosin-containing protein-like OS=Homo sapiens GN=NVL PE=1 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 9.675e-35
Identity = 79/202 (39.11%), Postives = 115/202 (56.93%), Query Frame = 3
Query:    6 LNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALAR---KKPIDDSVDLHTIAQSKFCENLSGXXXXXXXXXXXXXXXXXKLISSKSSSDVTPFTIKLTHFEQALSKISPSVSELQIQRYKTLSET 602
            LN YVGESE AVR +F RA+  +PC++FFDEVDAL  +R         R++NQLL E+DG + R+ VF++ ATNRPD++D A+LRPGR  K L+V LP P +R  IL+ + +   K P+D  V+L  IA    C+  +G                 ++   KS ++     +   HFE+A  K+  S+S+     Y+ L E+
Sbjct:  652 LNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMARQKSGNEKGELKVSHKHFEEAFKKVRSSISKKDQIMYERLQES 853          

HSP 2 Score: 82.8037 bits (203), Expect = 2.241e-15
Identity = 49/124 (39.52%), Postives = 71/124 (57.26%), Query Frame = 3
Query:   21 GESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLI---ELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIA 383
            GESE  +R LF +A + +PCI+F DE+DA+T KR      +  R++ QLL    +L+       V VIGATNRPD +D A+ R GRF + + + +P    R  IL+ L RK  +  + D   +A
Sbjct:  340 GESEQKLRELFEQAVSNAPCIIFIDEIDAITPKREVASKDMERRIVAQLLTCMDDLNNVAATARVLVIGATNRPDSLDPALRRAGRFDREICLGIPDEASRERILQTLCRKLRLPQAFDFCHLA 463          
BLAST of CN189219 vs. ExPASy Swiss-Prot
Match: CD48A_ARATH (Cell division control protein 48 homolog A OS=Arabidopsis thaliana GN=CDC48A PE=1 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 3.677e-34
Identity = 82/219 (37.44%), Postives = 121/219 (55.25%), Query Frame = 3
Query:    6 LNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGK----EGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGXXXXXXXXXXXXXXXXXKL---ISSKSSSDVTP-----------FTIKLTHFEQALSKISPSVSELQIQRYKTLSETFK 608
            L  + GESE  VR +F +AR  +PC+LFFDE+D++ T+RG     +GG   +R+LNQLL E+DG + +K VF+IGATNRPD++D A+LRPGR  +L+Y+PLP  D R  I +A  RK PI   VD+  +A  K+ +  SG                  +   I  +      P             IK  HFE+++     SVS+  I++Y+  ++T +
Sbjct:  551 LTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGGGSGGDGGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDSALLRPGRLDQLIYIPLPDEDSRLNIFKAALRKSPIAKDVDIGALA--KYTQGFSGADITEICQRACKYAIRENIEKDIEKEKRRSENPEAMEEDGVDEVSEIKAAHFEESMKYARRSVSDADIRKYQAFAQTLQ 767          

HSP 2 Score: 85.8853 bits (211), Expect = 2.647e-16
Identity = 47/127 (37.01%), Postives = 73/127 (57.48%), Query Frame = 3
Query:    6 LNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQ 386
            ++K  GESE  +R  F  A   +P I+F DE+D++  KR K  G V  R+++QLL  +DG   R  V V+GATNRP+ +D A+ R GRF + + + +P    R  +L    +   + + VDL  I++
Sbjct:  278 MSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEIGRLEVLRIHTKNMKLAEDVDLERISK 404          
BLAST of CN189219 vs. ExPASy Swiss-Prot
Match: CDC48_CAPAN (Cell division cycle protein 48 homolog OS=Capsicum annuum GN=CAFP PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.802e-34
Identity = 78/215 (36.28%), Postives = 119/215 (55.35%), Query Frame = 3
Query:    6 LNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGK---EGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQ----------SKFCENLSGXXXXXXXXXXXXXXXXXKLISSKSSSDVTPF-TIKLTHFEQALSKISPSVSELQIQRYKTLSETFK 608
            L  + GESE  VR +F +AR  +PC+LFFDE+D++ T+RG    + G   +R+LNQLL E+DG + +K VF+IGATNRPD++D A+LRPGR  +L+Y+PLP  D R  I +A  RK P+   +DL  +A+          ++ C+                     +        DV     IK  HFE+++     SVS+  I++Y+  ++T +
Sbjct:  552 LTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSSGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPLSKDIDLRALAKHTQGFSGADVTEICQRACKYAIRENIEKDIEREKRRQENPDSMDEDVDEVPEIKPAHFEESMKYARRSVSDADIRKYQAFAQTLQ 766          

HSP 2 Score: 84.3445 bits (207), Expect = 7.702e-16
Identity = 47/127 (37.01%), Postives = 73/127 (57.48%), Query Frame = 3
Query:    6 LNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQ 386
            ++K  GESE  +R  F  A   +P I+F DE+D++  KR K  G V  R+++QLL  +DG   R  V V+GATNRP+ +D A+ R GRF + + + +P    R  +L    +   + + VDL  I++
Sbjct:  279 MSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLGIHTKNMKLAEEVDLERISK 405          
BLAST of CN189219 vs. ExPASy Swiss-Prot
Match: CDC48_SOYBN (Cell division cycle protein 48 homolog OS=Glycine max GN=CDC48 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.070e-33
Identity = 82/219 (37.44%), Postives = 120/219 (54.79%), Query Frame = 3
Query:    6 LNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGK---EGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGXXXXXXXXXXXXXXXXXKL---ISSKSSSDVTP------------FTIKLTHFEQALSKISPSVSELQIQRYKTLSETFK 608
            L  + GESE  VR +F +AR  +PC+LFFDE+D++ T+RG    + G   +R+LNQLL E+DG   +K VF+IGATNRPD++D A+LRPGR  +L+Y+PLP  D R  I +A  RK PI  +VDL  +A  +  +  SG                  +   I  +  S   P              IK  HFE+++     SVS+  I++Y+  ++T +
Sbjct:  552 LTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPIAKNVDLRALA--RHTQGFSGADITEICQRACKYAIRENIEKDIERERKSRENPEAMDEDTVDDEVAEIKAAHFEESMKFARRSVSDADIRKYQAFAQTLQ 768          

HSP 2 Score: 89.7373 bits (221), Expect = 1.833e-17
Identity = 50/127 (39.37%), Postives = 73/127 (57.48%), Query Frame = 3
Query:    6 LNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQ 386
            ++K  GESE  +R  F  A   +P I+F DE+D++  KR K  G V  R+++QLL  +DG   R  V VIGATNRP+ +D A+ R GRF + + + +P    R  +L    +   + D VDL  IA+
Sbjct:  279 MSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLSDDVDLERIAK 405          
BLAST of CN189219 vs. ExPASy Swiss-Prot
Match: CD48D_ARATH (Cell division control protein 48 homolog D OS=Arabidopsis thaliana GN=CDC48D PE=1 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.112e-33
Identity = 79/217 (36.41%), Postives = 121/217 (55.76%), Query Frame = 3
Query:    6 LNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGK---EGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQSKFCENLSGXXXXXXXXXXXXXXXXXKL---ISSKSSSDVTP----------FTIKLTHFEQALSKISPSVSELQIQRYKTLSETFK 608
            L  + GESE  VR +F +AR  +PC+LFFDE+D++ T+RG    + G   +R+LNQLL E+DG + +K VF+IGATNRPD++D A+LRPGR  +L+Y+PLP  + R  I ++  RK P+   VDL  +A  K+ +  SG                  +   I  +     +P            IK  HFE+++     SVS+  I++Y+  ++T +
Sbjct:  552 LTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGNSVGDAGGAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEESRYQIFKSCLRKSPVAKDVDLRALA--KYTQGFSGADITEICQRSCKYAIRENIEKDIEKERKRAESPEAMEEDEEEIAEIKAGHFEESMKYARRSVSDADIRKYQAFAQTLQ 766          

HSP 2 Score: 84.7297 bits (208), Expect = 5.897e-16
Identity = 46/127 (36.22%), Postives = 73/127 (57.48%), Query Frame = 3
Query:    6 LNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQ 386
            ++K  GESE  +R  F  A   +P I+F DE+D++  KR K  G V  R+++QLL  +DG   R  V V+GATNRP+ +D A+ R GRF + + + +P    R  +L    +   + + VDL  +++
Sbjct:  279 MSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVPDEIGRLEVLRIHTKNMKLAEDVDLERVSK 405          
BLAST of CN189219 vs. ExPASy Swiss-Prot
Match: CDC48_ENCCU (Cell division control protein 48 OS=Encephalitozoon cuniculi GN=CDC48 PE=1 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.065e-33
Identity = 81/211 (38.39%), Postives = 120/211 (56.87%), Query Frame = 3
Query:    6 LNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGG--WVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTIAQS--KFCENLSGXXXXXXXXXXXXXXXXXKLISSKSSS------DVTPFTIKLTHFEQALSKISPSVSELQIQRYKTLSETFK 608
            L+ +VGESE  +R LF+RAR  +PC+LFFDE+D++   R    G     +R+LNQLL E+DG +++K VFVIGATNRPD +D A++RPGR  +L+Y+PLP  D R  IL+A  +K P+   +DL  +A++  KF                       +L   K  S      D  P+ ++  H  Q+L     SVSE +++RY+  + + K
Sbjct:  552 LSMWVGESESNIRDLFARARGAAPCVLFFDEIDSIAKARSGNDGSSGATDRMLNQLLSEMDGINQKKNVFVIGATNRPDQLDSALMRPGRLDQLVYIPLPDLDSRVSILQATLKKTPLSPEIDLRQLAEATDKFSGADLSEICQRACKLAIRETIEYELEQKKKGSEMMDLEDPVPY-LRPDHLVQSLKTARRSVSEKEVERYEAFARSMK 761          

HSP 2 Score: 90.8929 bits (224), Expect = 8.229e-18
Identity = 51/125 (40.80%), Postives = 71/125 (56.80%), Query Frame = 3
Query:    6 LNKYVGESELAVRTLFSRARTCSPCILFFDEVDALTTKRGKEGGWVVERLLNQLLIELDGADKRKGVFVIGATNRPDVMDRAVLRPGRFGKLLYVPLPTPDERGLILEALARKKPIDDSVDLHTI 380
            ++K  GESE  +R  F  A   SP I+F DE+DAL  KR K  G V  R+++QLL  +DG   R  V V+GATNRP+ +D A+ R GRF + + + +P    R  IL    +   + + VDL  I
Sbjct:  279 MSKMAGESESNLRKAFEEAEKNSPAIIFIDEIDALAPKREKSQGEVERRIVSQLLTLMDGMKARSNVIVLGATNRPNSIDPALRRYGRFDREIEIGVPDETGRLEILRIHTKNMKMSEDVDLVAI 403          
The following BLAST results are available for this feature:
BLAST of CN189219 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 359
Match NameE-valueIdentityDescription
CD48C_ARATH2.701e-6162.69Cell division control protein 48 homolog C OS=Arab... [more]
NVL_DICDI4.197e-3845.00Putative ribosome biogenesis ATPase nvl OS=Dictyos... [more]
YB7A_SCHPO8.751e-3639.34Uncharacterized AAA domain-containing protein C16E... [more]
NVL_MOUSE1.949e-3539.11Nuclear valosin-containing protein-like OS=Mus mus... [more]
NVL_HUMAN9.675e-3539.11Nuclear valosin-containing protein-like OS=Homo sa... [more]
CD48A_ARATH3.677e-3437.44Cell division control protein 48 homolog A OS=Arab... [more]
CDC48_CAPAN4.802e-3436.28Cell division cycle protein 48 homolog OS=Capsicum... [more]
CDC48_SOYBN1.070e-3337.44Cell division cycle protein 48 homolog OS=Glycine ... [more]
CD48D_ARATH3.112e-3336.41Cell division control protein 48 homolog D OS=Arab... [more]
CDC48_ENCCU4.065e-3338.39Cell division control protein 48 OS=Encephalitozoo... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS06_0001I02_r Washington Navel Orange Stored Fruit Rind cDNA Library Citrus sinensis cDNA clone CS_WEc0001I02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN189219 ID=CN189219; Name=CN189219; organism=Citrus sinensis; type=EST; length=761bp
GAGGCCTGAATAAATATGTTGGAGAAAGTGAGCTGGCAGTTCGAACATTA
TTCAGTCGTGCAAGAACATGTTCACCATGCATACTTTTCTTTGATGAGGT
GGATGCTCTGACTACAAAGCGTGGAAAAGAAGGAGGTTGGGTTGTTGAGC
GTCTTTTGAACCAGTTACTCATAGAGTTAGACGGGGCAGACAAGCGGAAG
GGTGTCTTTGTCATCGGTGCAACCAATAGGCCTGATGTGATGGATCGTGC
TGTCTTAAGGCCTGGGAGGTTTGGTAAACTCCTCTATGTCCCTCTTCCCA
CTCCAGATGAGCGCGGGTTGATATTGGAAGCTCTTGCTAGGAAGAAGCCA
ATAGATGACAGTGTTGATTTGCACACCATTGCACAATCAAAGTTTTGTGA
GAATTTAAGTGGAGCTGATCTTGCTGCAATGATGAATGAAGCTGCAATGG
CTGCCTTGGAAGATAAACTGATATCAAGCAAGAGCTCCTCGGATGTGACT
CCATTTACAATCAAGTTAACTCATTTTGAGCAAGCACTAAGTAAAATCTC
ACCATCTGTCTCAGAATTGCAAATACAGAGGTACAAGACCCTGTCAGAGA
CCTTCAAAGCAGCATGAGAAGAAGTATAAATTATTTCCTGAAGGCTTTTG
AGTGTGCTTAACTGCCAAATTATTTAAAGAATCACATGGCTTATGTGAGA
ATCAAGAGCGAGTGGCTTCACTGTGTTCCCCTTGTATTTCTACTTCATCG
TGGGGCAAAAA
back to top